Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow4G0075 Salvia bowleyana HOM05D006039 ORTHO05D006797 1.9e-237 825.5 429 100.0
SalBow4G2759 Salvia bowleyana HOM05D006039 ORTHO05D006797 1.9e-237 825.5 429 100.0
MSTRG.17577 Avicennia marina HOM05D006039 ORTHO05D006797 3.5e-122 442.6 470 56.8
Migut.D00567 Erythranthe guttata HOM05D006039 ORTHO05D006797 1.7e-116 423.7 431 59.4
Migut.N02301 Erythranthe guttata HOM05D006039 ORTHO05D006797 7.1e-115 418.3 450 56.4
Dinv36292 Davidia involucrata HOM05D006039 ORTHO05D006797 8.6e-113 411.4 473 54.3
SGA_v2.0_scaffold247G44833 Striga asiatica HOM05D006039 ORTHO05D006797 7.3e-112 408.3 488 54.9
MSTRG.12478 Avicennia marina HOM05D006039 ORTHO05D006797 1.2e-109 401.0 453 53.4
Oeu014066.1 Olea europaea HOM05D006039 ORTHO05D006797 6.4e-108 395.2 420 58.1
CSS0048119 Camellia sinensis var. sinensis HOM05D006039 ORTHO05D006797 4.8e-103 379.0 466 53.0
CSS0020882 Camellia sinensis var. sinensis HOM05D006039 ORTHO05D006797 2.4e-102 376.7 466 52.8
Solyc11g056640.3 Solanum lycopersicum HOM05D006039 ORTHO05D006797 1.2e-101 374.4 445 52.4
Nitab4.5_0000175g0040 Nicotiana tabacum HOM05D006039 ORTHO05D006797 5.8e-101 372.1 440 53.4
Nitab4.5_0002278g0050 Nicotiana tabacum HOM05D006039 ORTHO05D006797 1.1e-99 367.9 441 52.6
Lj1C361T2 Lonicera japonica HOM05D006039 ORTHO05D006797 2.7e-98 363.2 434 53.0
Cc01_g04400 Coffea canephora HOM05D006039 ORTHO05D006797 3.9e-97 359.4 459 49.7
Rhsim01G0190000 Rhododendron simsii HOM05D006039 ORTHO05D006797 1.1e-96 357.8 470 48.9
Atru.chr3.2554 Acer truncatum HOM05D006039 ORTHO05D006797 8.4e-92 341.7 482 47.9
Peaxi162Scf00839g00234 Petunia axillaris HOM05D006039 ORTHO05D006797 1.9e-91 340.5 441 51.7
Actinidia06328 Actinidia chinensis HOM05D006039 ORTHO05D006797 5.4e-91 339.0 447 49.7
TWI32G0154 Tripterygium wilfordii HOM05D006039 ORTHO05D006797 4.6e-90 335.9 457 49.5
TAR623G0385 Trochodendron aralioides HOM05D006039 ORTHO05D006797 1.1e-88 331.3 470 44.5
Eucgr.B03667 Eucalyptus grandis HOM05D006039 ORTHO05D006797 1.5e-88 330.9 473 45.9
Thecc.09G226300 Theobroma cacao HOM05D006039 ORTHO05D006797 1.4e-86 324.3 455 46.2
GSVIVG01025314001 Vitis vinifera HOM05D006039 ORTHO05D006797 2.4e-86 323.6 411 51.3
Sc16g0011650 Simmondsia chinensis HOM05D006039 ORTHO05D006797 6.9e-86 322.0 442 48.2
QL01p005703 Quercus lobata HOM05D006039 ORTHO05D006797 7.6e-85 318.5 479 46.6
MBI01_g36435_MAGBIO Magnolia biondii HOM05D006039 ORTHO05D006797 2.9e-84 316.6 463 44.9
Manes.06G167800 Manihot esculenta HOM05D006039 ORTHO05D006797 1.4e-83 314.3 445 47.0
Aqoxy3G00443 Aquilegia oxysepala HOM05D006039 ORTHO05D006797 5.5e-83 312.4 456 45.0
Cpa.g.sc84.90 Carica papaya HOM05D006039 ORTHO05D006797 5.5e-83 312.4 466 46.4
MELO3C014616.2 Cucumis melo HOM05D006039 ORTHO05D006797 5.5e-83 312.4 422 47.6
CiPaw.14G122300 Carya illinoinensis HOM05D006039 ORTHO05D006797 9.3e-83 311.6 449 47.7
Sabra01G0012000 Salix brachista HOM05D006039 ORTHO05D006797 1.2e-82 311.2 457 46.2
Potri.003G207400 Populus trichocarpa HOM05D006039 ORTHO05D006797 3.5e-82 309.7 436 46.6
Sed0010144 Sechium edule HOM05D006039 ORTHO05D006797 3.5e-82 309.7 441 46.0
CsaV3_4G024070 Cucumis sativus L. HOM05D006039 ORTHO05D006797 4.6e-82 309.3 437 46.5
ClCG02G023440 Citrullus lanatus HOM05D006039 ORTHO05D006797 7.9e-82 308.5 427 46.1
Prupe.6G022100 Prunus persica HOM05D006039 ORTHO05D006797 1.3e-81 307.8 409 48.7
Haze_23073 Corylus avellana HOM05D006039 ORTHO05D006797 1.8e-81 307.4 478 46.9
CANSAT54G2219 Cannabis sativa HOM05D006039 ORTHO05D006797 6.7e-81 305.4 449 46.8
Ciclev10014934m.g Citrus clementina HOM05D006039 ORTHO05D006797 6.7e-81 305.4 362 51.9
Duzib168G2100 Durio zibethinus HOM05D006039 ORTHO05D006797 4.3e-80 302.8 460 45.7
HanXRQChr13g0403991 Helianthus annuus HOM05D006039 ORTHO05D006797 4.3e-80 302.8 434 46.3
vmacro12713 Vaccinium macrocarpon HOM05D006039 ORTHO05D006797 4.3e-80 302.8 451 46.8
Lsat_1_v5_gn_1_67181 Lactuca sativa HOM05D006039 ORTHO05D006797 5.7e-80 302.4 450 43.6
Nn7g36093 Nelumbo nucifera HOM05D006039 ORTHO05D006797 9.6e-80 301.6 459 44.4
Lj3g0020392 Lotus japonicus HOM05D006039 ORTHO05D006797 2.4e-78 297.0 465 44.5
Potri.001G017100 Populus trichocarpa HOM05D006039 ORTHO05D006797 3.1e-78 296.6 478 43.3
Lalb_Chr22g0352291 Lupinus albus HOM05D006039 ORTHO05D006797 4.0e-78 296.2 422 45.7
COL.COLO4_24829 Corchorus olitorius HOM05D006039 ORTHO05D006797 5.3e-78 295.8 456 44.3
MD11G1028000 Malus domestica HOM05D006039 ORTHO05D006797 1.3e-76 291.2 500 41.0
ECA233G1597 Erigeron canadensis HOM05D006039 ORTHO05D006797 2.2e-76 290.4 413 46.2
Glyma.15G032500 Glycine max HOM05D006039 ORTHO05D006797 3.8e-76 289.7 457 43.8
Duzib150G0354 Durio zibethinus HOM05D006039 ORTHO05D006797 6.5e-76 288.9 443 45.8
PSO339G2813 Papaver somniferum HOM05D006039 ORTHO05D006797 1.9e-75 287.3 474 43.7
Ah.06g193560 Amaranthus hybridus HOM05D006039 ORTHO05D006797 5.5e-75 285.8 478 41.6
Manes.14G013400 Manihot esculenta HOM05D006039 ORTHO05D006797 9.3e-75 285.0 473 44.6
DCAR_002046 Daucus carota HOM05D006039 ORTHO05D006797 1.2e-74 284.6 490 42.9
Phvul.L011043 Phaseolus vulgaris HOM05D006039 ORTHO05D006797 1.2e-74 284.6 438 44.3
PSO384G3161 Papaver somniferum HOM05D006039 ORTHO05D006797 1.0e-73 281.6 474 43.0
THA.LOC104804971 Tarenaya hassleriana HOM05D006039 ORTHO05D006797 5.1e-73 279.3 454 43.2
Glyma.13G341800 Glycine max HOM05D006039 ORTHO05D006797 6.7e-73 278.9 459 43.4
EL10Ac4g10308 Beta vulgaris HOM05D006039 ORTHO05D006797 2.5e-72 276.9 475 43.4
Gohir.A13G216000 Gossypium hirsutum HOM05D006039 ORTHO05D006797 9.7e-72 275.0 429 45.5
arahy.Tifrunner.gnm1.ann1.CQR7QS Arachis hypogaea HOM05D006039 ORTHO05D006797 4.8e-71 272.7 449 44.5
RcHm_v2.0_Chr5g0077351 Rosa chinensis HOM05D006039 ORTHO05D006797 4.8e-71 272.7 427 43.8
Medtr2g098330 Medicago truncatula HOM05D006039 ORTHO05D006797 1.1e-70 271.6 428 44.2
Aa31LG3G14700 Aethionema arabicum HOM05D006389 ORTHO05D007863 2.4e-70 270.4 459 41.4
VMungo1080G1590 Vigna mungo HOM05D006039 ORTHO05D006797 4.1e-70 269.6 453 43.0
Gohir.D13G219700 Gossypium hirsutum HOM05D006039 ORTHO05D006797 2.9e-68 263.5 438 44.1
PGR102G2927 Punica granatum HOM05D006039 ORTHO05D006797 1.1e-67 261.5 470 42.3
Cfa009721 Carpinus fangiana HOM05D006039 ORTHO05D006797 3.2e-67 260.0 321 52.0
FAN21G1726 Fragaria x ananassa HOM05D006039 ORTHO05D006797 7.2e-67 258.8 406 43.1
Psat5g288280 Pisum sativum HOM05D006039 ORTHO05D006797 7.2e-67 258.8 511 39.9
FAN11G0272 Fragaria x ananassa HOM05D006039 ORTHO05D006797 1.2e-66 258.1 403 43.7
CARHR200520 Cardamine hirsuta HOM05D006039 ORTHO05D006797 2.3e-65 253.8 466 39.9
FAN25G3739 Fragaria x ananassa HOM05D006039 ORTHO05D006797 8.8e-65 251.9 406 42.9
AL6G23500 Arabidopsis lyrata HOM05D006039 ORTHO05D006797 1.1e-64 251.5 461 40.6
Lalb_Chr24g0396971 Lupinus albus HOM05D006039 ORTHO05D006797 1.1e-64 251.5 454 42.3
THA.LOC104799094 Tarenaya hassleriana HOM05D006039 ORTHO05D006797 1.5e-64 251.1 456 40.4
AUR62019256 Chenopodium quinoa HOM05D006039 ORTHO05D006797 4.3e-64 249.6 481 41.8
Thhalv10013519m.g Eutrema salsugineum HOM05D006039 ORTHO05D006797 4.3e-64 249.6 472 40.5
Sp6g31030 Schrenkiella parvula HOM05D006039 ORTHO05D006797 4.3e-64 249.6 419 42.0
Carub.0006s1111 Capsella rubella HOM05D006039 ORTHO05D006797 6.9e-62 242.3 469 38.8
AT5G12930 Arabidopsis thaliana HOM05D006039 ORTHO05D006797 1.0e-60 238.4 400 41.8
arahy.Tifrunner.gnm1.ann1.IJ2E5N Arachis hypogaea HOM05D006039 ORTHO05D006797 2.5e-59 233.8 429 43.1
AUR62005725 Chenopodium quinoa HOM05D006039 ORTHO05D006797 5.5e-59 232.6 476 39.5
Hund07543 Selenicereus undatus HOM05D006039 ORTHO05D006797 1.6e-58 231.1 287 48.4
Nn2g15509 Nelumbo nucifera HOM05D006039 ORTHO05D006797 7.4e-56 222.2 350 44.0
Potri.003G207500 Populus trichocarpa HOM05D006039 ORTHO05D006797 7.4e-56 222.2 419 39.1
BolC3t13172H Brassica oleracea HOM05D006039 ORTHO05D006797 3.7e-55 219.9 459 37.7
HPP92_015767 Vanilla planifolia HOM05D006039 ORTHO05D006797 6.3e-55 219.2 430 38.1
BraA03t09909Z Brassica rapa HOM05D006039 ORTHO05D006797 5.3e-54 216.1 463 37.4
BcaB01g05390 Brassica carinata HOM05D006389 ORTHO05D007863 7.0e-54 215.7 444 38.5
BraA02t05138Z Brassica rapa HOM05D006039 ORTHO05D006797 9.1e-54 215.3 391 41.4
FAN16G1487 Fragaria x ananassa HOM05D006039 ORTHO05D006797 1.5e-53 214.5 336 43.2
A02p01580 Brassica napus HOM05D006039 ORTHO05D006797 2.6e-53 213.8 455 39.1
C03p06660 Brassica napus HOM05D006039 ORTHO05D006797 5.0e-52 209.5 358 41.9
A03p05700 Brassica napus HOM05D006039 ORTHO05D006797 1.5e-51 208.0 463 37.6
BcaNung03603 Brassica carinata HOM05D006039 ORTHO05D006797 4.2e-51 206.5 452 36.7
Ca_01279_v3 Cicer arietinum L. HOM05D006039 ORTHO05D006797 9.4e-51 205.3 351 43.3
Os09g0488600 Oryza sativa ssp. japonica HOM05D006039 ORTHO05D006797 8.0e-50 202.2 444 37.4
Sabra03G0153000 Salix brachista HOM05D006039 ORTHO05D006797 3.0e-49 200.3 364 40.9
TAR636G1066 Trochodendron aralioides HOM05D004785 ORTHO05D005704 9.7e-48 195.3 363 39.9
BcaNung01186 Brassica carinata HOM05D006039 ORTHO05D006797 1.1e-46 191.8 437 35.5
BolC2t06525H Brassica oleracea HOM05D006039 ORTHO05D006797 1.1e-46 191.8 437 35.5
ATR0815G050 Amborella trichopoda HOM05D006039 ORTHO05D006797 1.8e-46 191.0 358 39.7
BcaB01g05389 Brassica carinata HOM05D006039 ORTHO05D006797 1.2e-45 188.3 359 39.3
C02p05800 Brassica napus HOM05D006039 ORTHO05D006797 3.5e-45 186.8 393 37.4
AUR62043683 Chenopodium quinoa HOM05D006039 ORTHO05D006797 6.1e-42 176.0 303 45.9
FvH4_3g43290 Fragaria vesca HOM05D006039 ORTHO05D006797 1.8e-41 174.5 287 41.5
Zm00001eb101890 Zea mays HOM05D006039 ORTHO05D006797 6.8e-41 172.6 312 40.7
Haze_23654 Corylus avellana HOM05D006039 ORTHO05D006797 8.8e-41 172.2 217 48.8
Actinidia39388 Actinidia chinensis HOM05D006039 ORTHO05D006797 1.2e-40 171.8 246 45.1
Haze_23653 Corylus avellana HOM05D006039 ORTHO05D006797 6.3e-39 166.0 265 44.2
TPR.G6898 Trifolium pratense HOM05D006039 ORTHO05D006797 7.0e-38 162.5 343 37.6
Haze_23698 Corylus avellana HOM05D006039 ORTHO05D006797 9.1e-38 162.2 193 50.3
CDE06G0903 Ceratophyllum demersum HOM05D000288 ORTHO05D000173 3.8e-36 156.8 258 41.5
AUR62043578 Chenopodium quinoa HOM05D006039 ORTHO05D006797 5.0e-36 156.4 273 40.7
Haze_23656 Corylus avellana HOM05D006039 ORTHO05D006797 8.5e-36 155.6 346 38.7
Haze_23655 Corylus avellana HOM05D006039 ORTHO05D006797 4.0e-33 146.7 253 38.7
Haze_23699 Corylus avellana HOM05D006039 ORTHO05D006797 3.1e-30 137.1 154 50.6
Haze_23701 Corylus avellana HOM05D006039 ORTHO05D006797 5.4e-30 136.3 255 39.6
MELO3C003056.2 Cucumis melo HOM05D006039 ORTHO05D006797 1.1e-27 128.6 151 47.7
AUR62000084 Chenopodium quinoa HOM05D006039 ORTHO05D000067 2.3e-25 120.9 145 52.4
AUR62014261 Chenopodium quinoa HOM05D006039 ORTHO05D006797 4.0e-25 120.2 216 40.7
SHI30498 Sapria himalayana HOM05D006039 ORTHO05D000001 4.9e-23 113.2 378 31.2
Cfa009719 Carpinus fangiana HOM05D006039 ORTHO05D006797 2.4e-22 110.9 230 40.4
TPR.G377 Trifolium pratense HOM05D006039 ORTHO05D006797 5.6e-19 99.8 90 64.4
Hund07487 Selenicereus undatus HOM05D000288 ORTHO05D006797 2.0e-16 91.3 210 37.6
Hund07491 Selenicereus undatus HOM05D006039 ORTHO05D006797 6.4e-15 86.3 155 43.9
Lsat_1_v5_gn_1_67161 Lactuca sativa HOM05D006039 ORTHO05D006797 2.0e-13 81.3 90 54.4
Pp3c6_9630 Physcomitrium patens HOM05D026113 ORTHO05D006797 2.2e-07 61.2 94 41.5
Pp3c20_22990 Physcomitrium patens HOM05D022188 ORTHO05D006797 2.9e-07 60.8 94 38.3
SEGI_29391 Sequoiadendron giganteum HOM05D022188 ORTHO05D006797 1.4e-06 58.5 95 38.9
Pp3c16_7650 Physcomitrium patens HOM05D026113 ORTHO05D006797 3.2e-06 57.4 106 35.8


User provided reference genes

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