Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow3G4629 Salvia bowleyana HOM05D005734 ORTHO05D006990 7.2e-105 384.0 210 100.0
MSTRG.2698 Avicennia marina HOM05D005734 ORTHO05D006990 8.0e-80 300.8 207 79.7
Migut.H01144 Erythranthe guttata HOM05D005734 ORTHO05D006990 6.8e-79 297.7 211 77.3
Dinv33615 Davidia involucrata HOM05D005734 ORTHO05D006990 1.9e-73 279.6 209 73.2
TAR376G0390 Trochodendron aralioides HOM05D005734 ORTHO05D006990 1.1e-71 273.9 185 75.7
Cc07_g10570 Coffea canephora HOM05D005734 ORTHO05D006990 1.8e-71 273.1 195 75.4
Nitab4.5_0005721g0110 Nicotiana tabacum HOM05D005734 ORTHO05D006990 2.3e-71 272.7 195 76.9
Lj2C466G2 Lonicera japonica HOM05D005734 ORTHO05D006990 3.1e-71 272.3 208 73.1
Nitab4.5_0004254g0030 Nicotiana tabacum HOM05D005734 ORTHO05D006990 3.1e-71 272.3 195 76.4
Glyma.11G075600 Glycine max HOM05D005734 ORTHO05D006990 7.5e-70 267.7 208 67.8
Peaxi162Scf00083g00086 Petunia axillaris HOM05D005734 ORTHO05D006990 1.3e-69 266.9 184 76.6
Solyc02g084220.3 Solanum lycopersicum HOM05D005734 ORTHO05D006990 4.9e-69 265.0 188 75.5
COL.COLO4_21933 Corchorus olitorius HOM05D005734 ORTHO05D006990 6.4e-69 264.6 203 70.0
Glyma.01G167600 Glycine max HOM05D005734 ORTHO05D006990 1.1e-68 263.8 208 67.8
QL06p033653 Quercus lobata HOM05D005734 ORTHO05D006990 1.1e-68 263.8 196 71.4
CiPaw.08G133400 Carya illinoinensis HOM05D005734 ORTHO05D006990 1.4e-68 263.5 205 70.7
Lalb_Chr16g0391171 Lupinus albus HOM05D005734 ORTHO05D006990 1.9e-68 263.1 204 68.1
MD15G1247200 Malus domestica HOM05D005734 ORTHO05D006990 2.4e-68 262.7 207 68.6
Thecc.01G021200 Theobroma cacao HOM05D005734 ORTHO05D006990 2.4e-68 262.7 203 69.5
VMungo1215G0268 Vigna mungo HOM05D005734 ORTHO05D006990 2.4e-68 262.7 208 66.3
Eucgr.K02152 Eucalyptus grandis HOM05D005734 ORTHO05D006990 3.2e-68 262.3 205 69.8
Sopen02g028960 Solanum pennellii HOM05D005734 ORTHO05D006990 3.2e-68 262.3 188 75.0
Phvul.002G110400 Phaseolus vulgaris HOM05D005734 ORTHO05D006990 9.2e-68 260.8 210 66.7
Rhsim08G0034500 Rhododendron simsii HOM05D005734 ORTHO05D006990 9.2e-68 260.8 206 68.4
TAR628G0339 Trochodendron aralioides HOM05D005734 ORTHO05D006990 9.2e-68 260.8 185 73.0
EL10Ac3g07303 Beta vulgaris HOM05D005734 ORTHO05D006990 1.2e-67 260.4 201 69.7
Gorai.003G010600 Gossypium raimondii HOM05D005734 ORTHO05D006990 1.6e-67 260.0 186 72.6
CSS0031169 Camellia sinensis var. sinensis HOM05D005734 ORTHO05D006990 2.7e-67 259.2 198 71.7
DCAR_017347 Daucus carota HOM05D005734 ORTHO05D006990 2.7e-67 259.2 188 73.4
Gohir.D03G010200 Gossypium hirsutum HOM05D005734 ORTHO05D006990 4.6e-67 258.5 186 72.0
Nn6g32291 Nelumbo nucifera HOM05D005734 ORTHO05D006990 4.6e-67 258.5 185 72.4
Actinidia31004 Actinidia chinensis HOM05D005734 ORTHO05D006990 7.8e-67 257.7 199 68.3
Gohir.A02G169800 Gossypium hirsutum HOM05D005734 ORTHO05D006990 1.0e-66 257.3 186 72.0
Manes.02G102700 Manihot esculenta HOM05D005734 ORTHO05D006990 2.3e-66 256.1 210 67.6
Ciclev10026469m.g Citrus clementina HOM05D005734 ORTHO05D006990 3.9e-66 255.4 198 72.2
Sabra07G0011400 Salix brachista HOM05D005734 ORTHO05D006990 5.1e-66 255.0 209 67.9
TWI09G0878 Tripterygium wilfordii HOM05D005734 ORTHO05D006990 6.6e-66 254.6 188 72.9
arahy.Tifrunner.gnm1.ann1.GC558H Arachis hypogaea HOM05D005734 ORTHO05D006990 1.5e-65 253.4 205 67.8
GSVIVG01018804001 Vitis vinifera HOM05D005734 ORTHO05D006990 1.5e-65 253.4 204 68.1
PSO210G7806 Papaver somniferum HOM05D005734 ORTHO05D006990 1.9e-65 253.1 204 68.6
MD02G1134200 Malus domestica HOM05D005734 ORTHO05D006990 2.5e-65 252.7 207 65.7
PGSC0003DMG400003554 Solanum tuberosum HOM05D005734 ORTHO05D006990 4.3e-65 251.9 214 66.8
TWI73G0895 Tripterygium wilfordii HOM05D005734 ORTHO05D006990 5.6e-65 251.5 208 66.3
TPR.G2344 Trifolium pratense HOM05D005734 ORTHO05D006990 7.3e-65 251.1 208 63.9
Lj2g0025294 Lotus japonicus HOM05D005734 ORTHO05D006990 2.1e-64 249.6 211 65.9
Ca_24908_v3 Cicer arietinum L. HOM05D005734 ORTHO05D006990 1.1e-63 247.3 208 63.9
Duzib147G0754 Durio zibethinus HOM05D005734 ORTHO05D006990 1.1e-63 247.3 204 67.6
Sed0005630 Sechium edule HOM05D005734 ORTHO05D006990 1.1e-63 247.3 209 65.1
Potri.005G116300 Populus trichocarpa HOM05D005734 ORTHO05D006990 1.8e-63 246.5 201 68.7
CsaV3_4G005730 Cucumis sativus L. HOM05D005734 ORTHO05D006990 2.4e-63 246.1 187 70.6
ClCG07G008420 Citrullus lanatus HOM05D005734 ORTHO05D006990 3.1e-63 245.7 210 65.7
FAN19G0086 Fragaria x ananassa HOM05D005734 ORTHO05D006990 3.1e-63 245.7 187 69.0
Medtr5g021750 Medicago truncatula HOM05D005734 ORTHO05D006990 3.1e-63 245.7 205 62.4
RcHm_v2.0_Chr2g0099641 Rosa chinensis HOM05D005734 ORTHO05D006990 3.1e-63 245.7 188 68.6
Ah.03g141620 Amaranthus hybridus HOM05D005734 ORTHO05D006990 4.0e-63 245.4 209 67.9
THA.LOC104819182 Tarenaya hassleriana HOM05D005734 ORTHO05D006990 4.0e-63 245.4 186 71.0
Thhalv10004735m.g Eutrema salsugineum HOM05D005734 ORTHO05D006990 6.8e-63 244.6 187 69.5
Sabra05G0095300 Salix brachista HOM05D005734 ORTHO05D006990 8.9e-63 244.2 186 71.0
FvH4_1g12000 Fragaria vesca HOM05D005734 ORTHO05D006990 1.2e-62 243.8 187 69.0
Aa31LG1G14770 Aethionema arabicum HOM05D005734 ORTHO05D006990 2.0e-62 243.0 197 66.0
AL8G45230 Arabidopsis lyrata HOM05D005734 ORTHO05D006990 2.6e-62 242.7 191 67.5
AT5G66290 Arabidopsis thaliana HOM05D005734 ORTHO05D006990 3.4e-62 242.3 186 68.8
Sp2g30330 Schrenkiella parvula HOM05D005734 ORTHO05D006990 3.4e-62 242.3 192 67.2
unitig_699.g19712 Utricularia gibba HOM05D005734 ORTHO05D006990 3.4e-62 242.3 191 69.6
Carub.0008s2820 Capsella rubella HOM05D005734 ORTHO05D006990 4.4e-62 241.9 191 67.0
Psat2g155360 Pisum sativum HOM05D005734 ORTHO05D006990 4.4e-62 241.9 208 62.5
Hund14038 Selenicereus undatus HOM05D005734 ORTHO05D006990 9.9e-62 240.7 228 60.5
Lsat_1_v5_gn_3_73980 Lactuca sativa HOM05D005734 ORTHO05D006990 4.2e-60 235.3 193 65.8
A07p17570 Brassica napus HOM05D005734 ORTHO05D006990 9.3e-60 234.2 199 65.8
Cpa.g.sc6.229 Carica papaya HOM05D005734 ORTHO05D006990 1.2e-59 233.8 206 65.5
ECA246G4348 Erigeron canadensis HOM05D000013 ORTHO05D000011 2.1e-59 233.0 192 66.7
ATR0147G004 Amborella trichopoda HOM05D005734 ORTHO05D006990 6.0e-59 231.5 181 68.5
Aqoxy4G02678 Aquilegia oxysepala HOM05D005734 ORTHO05D006990 1.7e-58 229.9 198 63.6
HanXRQChr16g0531031 Helianthus annuus HOM05D005734 ORTHO05D006990 3.9e-58 228.8 186 68.3
Aqoxy4G02673 Aquilegia oxysepala HOM05D005734 ORTHO05D006990 5.1e-58 228.4 198 63.1
BcaC06g34694 Brassica carinata HOM05D005734 ORTHO05D006990 6.6e-58 228.0 184 67.9
C07p25530 Brassica napus HOM05D005734 ORTHO05D006990 6.6e-58 228.0 184 67.9
BolC7t43073H Brassica oleracea HOM05D005734 ORTHO05D006990 6.6e-58 228.0 184 67.9
BcaB02g10036 Brassica carinata HOM05D005734 ORTHO05D006990 1.1e-57 227.3 191 64.9
MBI05_g26512_MAGBIO Magnolia biondii HOM05D005734 ORTHO05D006990 1.5e-57 226.9 195 65.1
BcaC04g23124 Brassica carinata HOM05D005734 ORTHO05D006990 7.3e-57 224.6 206 61.2
BcaNung04509 Brassica carinata HOM05D005734 ORTHO05D006990 9.6e-57 224.2 207 59.9
BcaC04g23120 Brassica carinata HOM05D005734 ORTHO05D006990 2.1e-56 223.0 197 62.4
HanXRQChr15g0482851 Helianthus annuus HOM05D005734 ORTHO05D006990 3.6e-56 222.2 192 63.5
BcaNung05273 Brassica carinata HOM05D005734 ORTHO05D006990 6.2e-56 221.5 211 59.7
HPP92_018404 Vanilla planifolia HOM05D005734 ORTHO05D006990 1.4e-55 220.3 188 65.4
Nn5g29268 Nelumbo nucifera HOM05D005734 ORTHO05D006990 1.8e-55 219.9 185 66.5
C09p11890 Brassica napus HOM05D005734 ORTHO05D006990 3.1e-55 219.2 188 63.3
Os03g0727100 Oryza sativa ssp. japonica HOM05D005734 ORTHO05D006990 6.9e-55 218.0 192 65.6
BolC9t54077H Brassica oleracea HOM05D005734 ORTHO05D006990 9.0e-55 217.6 191 62.8
Prupe.7G166600 Prunus persica HOM05D005734 ORTHO05D006990 2.6e-54 216.1 187 63.6
Gohir.A12G060300 Gossypium hirsutum HOM05D005734 ORTHO05D006990 4.4e-54 215.3 191 61.3
Zm00001eb055930 Zea mays HOM05D005734 ORTHO05D006990 2.2e-53 213.0 198 61.1
CARHR281420 Cardamine hirsuta HOM05D005734 ORTHO05D006990 1.1e-52 210.7 156 71.2
RcHm_v2.0_Chr1g0353231 Rosa chinensis HOM05D005734 ORTHO05D006990 1.6e-51 206.8 175 61.7
FAN26G0019 Fragaria x ananassa HOM05D005734 ORTHO05D006990 3.5e-51 205.7 188 60.6
RcHm_v2.0_Chr5g0080231 Rosa chinensis HOM05D005734 ORTHO05D006990 3.5e-51 205.7 158 65.8
Lsat_1_v5_gn_4_152781 Lactuca sativa HOM05D005734 ORTHO05D006990 6.0e-51 204.9 170 61.8
RcHm_v2.0_Chr0c39g0503221 Rosa chinensis HOM05D005734 ORTHO05D006990 1.3e-50 203.8 148 68.2
vmacro18422 Vaccinium macrocarpon HOM05D005734 ORTHO05D006990 1.9e-49 199.9 251 51.4
Sc16g0002040 Simmondsia chinensis HOM05D005734 ORTHO05D006990 5.6e-49 198.4 143 74.1
CSS0012385 Camellia sinensis var. sinensis HOM05D005734 ORTHO05D006990 9.6e-49 197.6 148 72.3
CSS0021905 Camellia sinensis var. sinensis HOM05D005734 ORTHO05D006990 2.1e-48 196.4 148 72.3
A09p10030 Brassica napus HOM05D005734 ORTHO05D006990 4.8e-48 195.3 203 53.7
SGA_v2.0_scaffold137G35098 Striga asiatica HOM05D005734 ORTHO05D006990 1.8e-47 193.4 114 85.1
Cfa006957 Carpinus fangiana HOM05D005734 ORTHO05D006990 2.6e-46 189.5 139 70.5
arahy.Tifrunner.gnm1.ann1.DFQ3ES Arachis hypogaea HOM05D005734 ORTHO05D006990 4.9e-45 185.3 161 63.4
QL06p033647 Quercus lobata HOM05D005734 ORTHO05D006990 6.4e-45 184.9 127 72.4
Atru.chr3.782 Acer truncatum HOM05D005734 ORTHO05D006990 4.2e-44 182.2 185 56.2
AUR62018084 Chenopodium quinoa HOM05D005734 ORTHO05D006990 1.0e-42 177.6 137 68.6
Potri.007G014000 Populus trichocarpa HOM05D005734 ORTHO05D006990 8.7e-42 174.5 151 66.2
MELO3C016376.2 Cucumis melo HOM05D005734 ORTHO05D006990 3.3e-41 172.6 137 70.1
ATR0876G001 Amborella trichopoda HOM05D005734 ORTHO05D006990 1.6e-40 170.2 112 72.3
FAN23G1819 Fragaria x ananassa HOM05D005734 ORTHO05D006990 2.1e-40 169.9 189 56.1
PSO170G3799 Papaver somniferum HOM05D005734 ORTHO05D006990 1.6e-35 153.7 122 69.7
Pp3c14_25740 Physcomitrium patens HOM05D005734 ORTHO05D006990 3.8e-29 132.5 182 41.2
Gorai.008G063500 Gossypium raimondii HOM05D005734 ORTHO05D006990 5.0e-29 132.1 113 61.9
CDE11G0627 Ceratophyllum demersum HOM05D005734 ORTHO05D006990 1.4e-28 130.6 113 56.6
Sc18g0002570 Simmondsia chinensis HOM05D005734 ORTHO05D006990 5.5e-28 128.6 111 64.0
Lsat_1_v5_gn_4_38760 Lactuca sativa HOM05D005734 ORTHO05D006990 4.6e-27 125.6 121 53.7
Mapoly0166s0009 Marchantia polymorpha HOM05D005734 ORTHO05D006990 7.9e-27 124.8 205 38.0
Sc16g0006390 Simmondsia chinensis HOM05D005734 ORTHO05D006990 1.8e-26 123.6 111 61.3
Sc09g0006730 Simmondsia chinensis HOM05D005734 ORTHO05D006990 4.3e-25 119.0 111 59.5
FAN28G1963 Fragaria x ananassa HOM05D005734 ORTHO05D006990 3.7e-24 115.9 99 63.6
Lj2A474G36 Lonicera japonica HOM05D005734 ORTHO05D006990 4.8e-24 115.5 151 49.0
CDE05G1720 Ceratophyllum demersum HOM05D005734 ORTHO05D006990 2.4e-23 113.2 148 48.0
Pp3c1_42750 Physcomitrium patens HOM05D005734 ORTHO05D006990 9.0e-23 111.3 217 35.0
Haze_03794 Corylus avellana HOM05D005734 ORTHO05D006990 3.4e-22 109.4 75 73.3
BraA09t36646Z Brassica rapa HOM05D005734 ORTHO05D006990 1.3e-21 107.5 112 55.4
Medtr5g021780 Medicago truncatula HOM05D005734 ORTHO05D006990 1.4e-20 104.0 81 61.7
RcHm_v2.0_Chr2g0126361 Rosa chinensis HOM05D005734 ORTHO05D006990 4.3e-17 92.4 65 67.7
AagrBONN_evm.TU.Sc2ySwM_117.481 Anthoceros agrestis HOM05D005734 ORTHO05D006990 5.7e-17 92.0 140 41.4
SMO228G0004 Selaginella moellendorffii HOM05D005734 ORTHO05D006990 1.3e-16 90.9 116 38.8
Gohir.D12G060400 Gossypium hirsutum HOM05D005734 ORTHO05D006990 2.2e-16 90.1 78 57.7
Lj2C474G2 Lonicera japonica HOM05D005734 ORTHO05D006990 5.9e-14 82.0 73 61.6
Eucgr.L03507 Eucalyptus grandis HOM05D005734 ORTHO05D006990 4.1e-07 59.3 82 42.7
HanXRQChr04g0110971 Helianthus annuus HOM05D000316 ORTHO05D012803 1.5e-06 57.4 63 54.0


User provided reference genes

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