Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow3G1594 Salvia bowleyana HOM05D004858 ORTHO05D005600 3.6e-64 248.1 121 100.0
SalBow3G4557 Salvia bowleyana HOM05D004858 ORTHO05D005600 3.6e-64 248.1 121 100.0
SGA_v2.0_scaffold121G33088 Striga asiatica HOM05D004858 ORTHO05D005600 9.5e-41 170.2 98 83.7
MSTRG.23644 Avicennia marina HOM05D004858 ORTHO05D005600 1.4e-39 166.4 97 81.4
Migut.L00438 Erythranthe guttata HOM05D004858 ORTHO05D005600 1.1e-36 156.8 98 79.6
unitig_46.g18678 Utricularia gibba HOM05D004858 ORTHO05D005600 1.2e-35 153.3 98 78.6
HanXRQChr07g0203771 Helianthus annuus HOM05D004858 ORTHO05D005600 2.0e-35 152.5 98 76.5
unitig_37.g12385 Utricularia gibba HOM05D004858 ORTHO05D005600 7.8e-35 150.6 99 75.8
HanXRQChr14g0447621 Helianthus annuus HOM05D004858 ORTHO05D005600 1.0e-34 150.2 98 76.5
Lsat_1_v5_gn_2_81581 Lactuca sativa HOM05D004858 ORTHO05D005600 1.3e-34 149.8 98 77.6
Cc07_g07610 Coffea canephora HOM05D004858 ORTHO05D005600 2.9e-34 148.7 97 75.3
Actinidia36402 Actinidia chinensis HOM05D004858 ORTHO05D005600 8.6e-34 147.1 97 74.2
CANSAT01G1371 Cannabis sativa HOM05D004858 ORTHO05D005600 1.5e-33 146.4 97 71.1
CDE02G3413 Ceratophyllum demersum HOM05D004858 ORTHO05D005600 1.9e-33 146.0 98 72.4
Oeu014311.1 Olea europaea HOM05D004858 ORTHO05D005600 1.9e-33 146.0 90 76.7
CSS0041224 Camellia sinensis var. sinensis HOM05D004858 ORTHO05D005600 2.5e-33 145.6 98 70.4
CSS0047057 Camellia sinensis var. sinensis HOM05D004858 ORTHO05D005600 2.5e-33 145.6 98 70.4
arahy.Tifrunner.gnm1.ann1.YV33P0 Arachis hypogaea HOM05D004858 ORTHO05D005600 4.3e-33 144.8 98 71.4
Oeu061526.2 Olea europaea HOM05D004858 ORTHO05D005600 4.3e-33 144.8 90 74.4
CDE01G0584 Ceratophyllum demersum HOM05D004858 ORTHO05D005600 5.6e-33 144.4 98 71.4
ECA238G2402 Erigeron canadensis HOM05D004858 ORTHO05D005600 5.6e-33 144.4 98 76.5
CiPaw.08G148200 Carya illinoinensis HOM05D004858 ORTHO05D005600 7.3e-33 144.1 98 72.4
Dinv23069 Davidia involucrata HOM05D004858 ORTHO05D005600 7.3e-33 144.1 97 70.1
Peaxi162Scf00118g01314 Petunia axillaris HOM05D004858 ORTHO05D005600 9.5e-33 143.7 97 66.0
PGR102G0524 Punica granatum HOM05D004858 ORTHO05D005600 1.2e-32 143.3 98 69.4
Rhsim08G0089100 Rhododendron simsii HOM05D004858 ORTHO05D005600 1.2e-32 143.3 97 72.2
HanXRQChr09g0263081 Helianthus annuus HOM05D004858 ORTHO05D005600 2.1e-32 142.5 98 72.4
Lj4g0010254 Lotus japonicus HOM05D004858 ORTHO05D005600 2.1e-32 142.5 103 66.0
Ca_22084_v3 Cicer arietinum L. HOM05D004858 ORTHO05D005600 2.8e-32 142.1 103 65.0
MD02G1193900 Malus domestica HOM05D004858 ORTHO05D005600 2.8e-32 142.1 103 68.0
Cpa.g.sc129.47 Carica papaya HOM05D004858 ORTHO05D005600 6.1e-32 141.0 99 69.7
Peaxi162Scf00096g01525 Petunia axillaris HOM05D004858 ORTHO05D005600 6.1e-32 141.0 98 74.5
THA.LOC104804193 Tarenaya hassleriana HOM05D004858 ORTHO05D005600 6.1e-32 141.0 97 70.1
Glyma.05G110100 Glycine max HOM05D004858 ORTHO05D005600 8.0e-32 140.6 98 70.4
Solyc02g091880.4 Solanum lycopersicum HOM05D004858 ORTHO05D005600 8.0e-32 140.6 99 70.7
Sopen02g036450 Solanum pennellii HOM05D004858 ORTHO05D005600 8.0e-32 140.6 99 70.7
VMungo0251G0206 Vigna mungo HOM05D004858 ORTHO05D005600 8.0e-32 140.6 98 70.4
Cfa006798 Carpinus fangiana HOM05D004858 ORTHO05D005600 1.0e-31 140.2 98 69.4
CiPaw.07G039500 Carya illinoinensis HOM05D004858 ORTHO05D005600 1.0e-31 140.2 98 70.4
Glyma.17G157000 Glycine max HOM05D004858 ORTHO05D005600 1.4e-31 139.8 98 70.4
Carub.0007s0239 Capsella rubella HOM05D004858 ORTHO05D005600 1.8e-31 139.4 98 69.4
ECA232G2479 Erigeron canadensis HOM05D004858 ORTHO05D005600 1.8e-31 139.4 100 74.0
Gorai.003G034000 Gossypium raimondii HOM05D004858 ORTHO05D005600 2.3e-31 139.0 98 70.4
MBI16_g31809_MAGBIO Magnolia biondii HOM05D004858 ORTHO05D005600 2.3e-31 139.0 97 68.0
Manes.13G106700 Manihot esculenta HOM05D004858 ORTHO05D005600 3.0e-31 138.7 100 71.0
THA.LOC104807646 Tarenaya hassleriana HOM05D004858 ORTHO05D005600 3.0e-31 138.7 98 67.3
Eucgr.I00649 Eucalyptus grandis HOM05D004858 ORTHO05D005600 5.2e-31 137.9 98 72.4
Thhalv10026651m.g Eutrema salsugineum HOM05D004858 ORTHO05D005600 5.2e-31 137.9 98 68.4
Gohir.A02G148000 Gossypium hirsutum HOM05D004858 ORTHO05D005600 5.2e-31 137.9 98 70.4
Gohir.D03G032400 Gossypium hirsutum HOM05D004858 ORTHO05D005600 6.8e-31 137.5 98 70.4
GSVIVG01006593001 Vitis vinifera HOM05D004858 ORTHO05D005600 6.8e-31 137.5 97 67.0
AL7G12840 Arabidopsis lyrata HOM05D004858 ORTHO05D005600 8.9e-31 137.1 98 68.4
CAN.G1061.6 Capsicum annuum HOM05D004858 ORTHO05D005600 8.9e-31 137.1 99 69.7
TAR381G0631 Trochodendron aralioides HOM05D004858 ORTHO05D005600 1.2e-30 136.7 98 66.3
Gohir.A11G210700 Gossypium hirsutum HOM05D004858 ORTHO05D005600 1.5e-30 136.3 98 68.4
Medtr4g097800 Medicago truncatula HOM05D004858 ORTHO05D005600 1.5e-30 136.3 99 69.7
Hma1.2p1_1953F.1_g308860 Hydrangea macrophylla HOM05D004858 ORTHO05D005600 2.0e-30 136.0 100 67.0
FvH4_1g18620 Fragaria vesca HOM05D004858 ORTHO05D005600 2.6e-30 135.6 98 68.4
FAN19G1409 Fragaria x ananassa HOM05D004858 ORTHO05D005600 2.6e-30 135.6 98 68.4
Sp7g35470 Schrenkiella parvula HOM05D004858 ORTHO05D005600 2.6e-30 135.6 97 68.0
Atru.chr3.1087 Acer truncatum HOM05D004858 ORTHO05D005600 3.4e-30 135.2 98 66.3
A08p22870 Brassica napus HOM05D004858 ORTHO05D005600 3.4e-30 135.2 97 68.0
COL.COLO4_11647 Corchorus olitorius HOM05D004858 ORTHO05D005600 3.4e-30 135.2 98 68.4
FAN26G1754 Fragaria x ananassa HOM05D004858 ORTHO05D005600 3.4e-30 135.2 98 68.4
Os03g0772800 Oryza sativa ssp. japonica HOM05D004858 ORTHO05D005600 3.4e-30 135.2 98 68.4
TAR628G1120 Trochodendron aralioides HOM05D004858 ORTHO05D005600 4.4e-30 134.8 98 66.3
AT4G37830 Arabidopsis thaliana HOM05D004858 ORTHO05D005600 5.7e-30 134.4 97 66.0
CARHR246220 Cardamine hirsuta HOM05D004858 ORTHO05D005600 5.7e-30 134.4 97 67.0
FAN23G1848 Fragaria x ananassa HOM05D004858 ORTHO05D005600 9.8e-30 133.7 98 67.3
FAN28G0049 Fragaria x ananassa HOM05D004858 ORTHO05D005600 9.8e-30 133.7 98 67.3
TWI74G1540 Tripterygium wilfordii HOM05D004858 ORTHO05D005600 1.3e-29 133.3 98 65.3
CsaV3_3G007040 Cucumis sativus L. HOM05D004858 ORTHO05D005600 1.7e-29 132.9 97 68.0
Manes.12G119200 Manihot esculenta HOM05D004858 ORTHO05D005600 1.7e-29 132.9 101 68.3
Phvul.003G231600 Phaseolus vulgaris HOM05D004858 ORTHO05D005600 1.7e-29 132.9 98 67.3
Gohir.D11G212400 Gossypium hirsutum HOM05D004858 ORTHO05D005600 2.2e-29 132.5 95 68.4
Gorai.007G228300 Gossypium raimondii HOM05D004858 ORTHO05D005600 2.2e-29 132.5 95 68.4
QL06p038187 Quercus lobata HOM05D004858 ORTHO05D005600 2.2e-29 132.5 98 65.3
Nitab4.5_0007790g0010 Nicotiana tabacum HOM05D004858 ORTHO05D005600 2.9e-29 132.1 92 75.0
RcHm_v2.0_Chr2g0109411 Rosa chinensis HOM05D004858 ORTHO05D005600 2.9e-29 132.1 98 66.3
Aqoxy6G01531 Aquilegia oxysepala HOM05D004858 ORTHO05D005600 3.7e-29 131.7 97 61.9
Duzib187G0061 Durio zibethinus HOM05D004858 ORTHO05D005600 3.7e-29 131.7 98 67.3
TPR.G22417 Trifolium pratense HOM05D004858 ORTHO05D005600 3.7e-29 131.7 99 69.7
EL10Ac6g14949 Beta vulgaris HOM05D004858 ORTHO05D005600 4.9e-29 131.3 100 66.0
Lsat_1_v5_gn_4_159121 Lactuca sativa HOM05D004858 ORTHO05D005600 4.9e-29 131.3 98 69.4
THA.LOC104824932 Tarenaya hassleriana HOM05D004858 ORTHO05D005600 4.9e-29 131.3 97 66.0
ClCG10G008050 Citrullus lanatus HOM05D004858 ORTHO05D005600 8.3e-29 130.6 97 67.0
Nitab4.5_0026287g0010 Nicotiana tabacum HOM05D004858 ORTHO05D005600 8.3e-29 130.6 90 68.9
BcaC01g00373 Brassica carinata HOM05D004858 ORTHO05D005600 1.1e-28 130.2 97 66.0
BolC3t20143H Brassica oleracea HOM05D004858 ORTHO05D005600 1.1e-28 130.2 97 66.0
Potri.007G008800 Populus trichocarpa HOM05D004858 ORTHO05D005600 1.1e-28 130.2 97 63.9
Solyc03g043850.3 Solanum lycopersicum HOM05D004858 ORTHO05D005600 1.1e-28 130.2 97 62.9
arahy.Tifrunner.gnm1.ann1.J6YKXI Arachis hypogaea HOM05D004858 ORTHO05D005600 1.4e-28 129.8 91 69.2
Lalb_Chr09g0329381 Lupinus albus HOM05D004858 ORTHO05D005600 1.8e-28 129.4 99 65.7
Duzib147G0425 Durio zibethinus HOM05D004858 ORTHO05D005600 2.4e-28 129.0 103 62.1
MBI16_g05028_MAGBIO Magnolia biondii HOM05D004858 ORTHO05D005600 2.4e-28 129.0 94 66.0
Prupe.6G213100 Prunus persica HOM05D004858 ORTHO05D005600 2.4e-28 129.0 103 62.1
CiPaw.10G150100 Carya illinoinensis HOM05D004858 ORTHO05D005600 4.1e-28 128.3 69 79.7
Haze_03960 Corylus avellana HOM05D004858 ORTHO05D005600 4.1e-28 128.3 92 68.5
Lalb_Chr16g0385901 Lupinus albus HOM05D004858 ORTHO05D005600 4.1e-28 128.3 101 65.3
AUR62007965 Chenopodium quinoa HOM05D004858 ORTHO05D005600 5.4e-28 127.9 100 64.0
Lalb_Chr05g0220461 Lupinus albus HOM05D004858 ORTHO05D005600 7.0e-28 127.5 101 65.3
Ciclev10026828m.g Citrus clementina HOM05D004858 ORTHO05D005600 1.2e-27 126.7 100 61.0
DCAR_025838 Daucus carota HOM05D004858 ORTHO05D005600 1.2e-27 126.7 92 67.4
Aa31LG6G14730 Aethionema arabicum HOM05D004858 ORTHO05D005600 1.6e-27 126.3 126 55.6
Sed0006730 Sechium edule HOM05D004858 ORTHO05D005600 3.5e-27 125.2 98 64.3
PSO675G0895 Papaver somniferum HOM05D004858 ORTHO05D005600 4.6e-27 124.8 97 61.9
C01p01370 Brassica napus HOM05D004858 ORTHO05D005600 5.9e-27 124.4 98 62.2
PGSC0003DMG400017913 Solanum tuberosum HOM05D004858 ORTHO05D005600 1.7e-26 122.9 91 63.7
BolC1t00134H Brassica oleracea HOM05D004858 ORTHO05D005600 2.3e-26 122.5 98 61.2
Dinv26980 Davidia involucrata HOM05D004858 ORTHO05D005600 2.3e-26 122.5 91 67.0
Nn6g34570 Nelumbo nucifera HOM05D004858 ORTHO05D005600 3.0e-26 122.1 97 60.8
Sc16g0000840 Simmondsia chinensis HOM05D004858 ORTHO05D005600 3.0e-26 122.1 100 62.0
PGSC0003DMG400030258 Solanum tuberosum HOM05D004858 ORTHO05D005600 3.9e-26 121.7 93 64.5
TWI77G0309 Tripterygium wilfordii HOM05D004858 ORTHO05D005600 6.6e-26 120.9 88 64.8
Nn5g30705 Nelumbo nucifera HOM05D004858 ORTHO05D005600 1.9e-25 119.4 91 63.7
HPP92_024955 Vanilla planifolia HOM05D004858 ORTHO05D005600 3.3e-25 118.6 103 58.3
ATR0767G115 Amborella trichopoda HOM05D004858 ORTHO05D005600 4.3e-25 118.2 92 63.0
Duzib264G0490 Durio zibethinus HOM05D004858 ORTHO05D005600 9.5e-25 117.1 98 62.2
Psat4g088320 Pisum sativum HOM05D004858 ORTHO05D005600 9.5e-25 117.1 92 66.3
Thecc.01G079800 Theobroma cacao HOM05D004858 ORTHO05D005600 1.2e-24 116.7 92 65.2
MD15G1304000 Malus domestica HOM05D004858 ORTHO05D005600 1.6e-24 116.3 98 61.2
DCAR_021459 Daucus carota HOM05D004858 ORTHO05D005600 2.1e-24 115.9 98 61.2
Zm00001eb058950 Zea mays HOM05D004858 ORTHO05D005600 2.1e-24 115.9 94 64.9
AUR62003145 Chenopodium quinoa HOM05D004858 ORTHO05D005600 2.8e-24 115.5 94 62.8
CSS0011371 Camellia sinensis var. sinensis HOM05D004858 ORTHO05D005600 8.0e-24 114.0 90 65.6
Sabra07G0006800 Salix brachista HOM05D004858 ORTHO05D005600 1.8e-23 112.8 90 60.0
HPP92_021258 Vanilla planifolia HOM05D000682 ORTHO05D000510 3.7e-21 105.1 84 57.1
CSS0003752 Camellia sinensis var. sinensis HOM05D004858 ORTHO05D005600 4.6e-19 98.2 76 65.8
Nitab4.5_0002639g0030 Nicotiana tabacum HOM05D004858 ORTHO05D005600 3.0e-18 95.5 76 61.8
vmacro18001 Vaccinium macrocarpon HOM05D004858 ORTHO05D005600 3.9e-18 95.1 50 76.0
Nitab4.5_0000396g0060 Nicotiana tabacum HOM05D004858 ORTHO05D005600 5.0e-18 94.7 92 60.9
PGSC0003DMG400030628 Solanum tuberosum HOM05D004858 ORTHO05D005600 1.5e-17 93.2 108 50.9
Mapoly0043s0104 Marchantia polymorpha HOM05D004858 ORTHO05D005600 4.7e-16 88.2 70 54.3
BraA08t34250Z Brassica rapa HOM05D004858 ORTHO05D005600 6.2e-16 87.8 81 58.0
BraA01t00120Z Brassica rapa HOM05D004858 ORTHO05D005600 5.2e-15 84.7 101 50.5
Ah.03g139600 Amaranthus hybridus HOM05D004858 ORTHO05D005600 6.8e-15 84.3 79 59.5
MELO3C014946.2 Cucumis melo HOM05D004858 ORTHO05D005600 6.8e-15 84.3 77 63.6
C03p79020 Brassica napus HOM05D004858 ORTHO05D005600 5.8e-14 81.3 76 56.6
Hund16598 Selenicereus undatus HOM05D004858 ORTHO05D005600 7.5e-14 80.9 79 58.2
Sc03g0000690 Simmondsia chinensis HOM05D004858 ORTHO05D005600 2.2e-13 79.3 78 55.1
Pp3c5_3360 Physcomitrium patens HOM05D004858 ORTHO05D005600 2.9e-13 79.0 82 47.6
AagrBONN_evm.TU.Sc2ySwM_344.1653 Anthoceros agrestis HOM05D004858 ORTHO05D005600 6.4e-13 77.8 101 48.5
CBR_g50891 Chara braunii HOM05D004858 ORTHO05D005600 2.7e-11 72.4 106 41.5
Pp3c13_15160 Physcomitrium patens HOM05D004858 ORTHO05D005600 6.6e-10 67.8 72 44.4
SEGI_12659 Sequoiadendron giganteum HOM05D004858 ORTHO05D005600 7.3e-09 64.3 53 52.8
Pp3c6_25050 Physcomitrium patens HOM05D004858 ORTHO05D005600 1.6e-08 63.2 93 40.9
vmacro22430 Vaccinium macrocarpon HOM05D004858 ORTHO05D005600 2.1e-08 62.8 40 62.5
PRCOL_00006369 Prasinoderma coloniale HOM05D004858 ORTHO05D005600 3.6e-08 62.0 85 36.5
SHI12046 Sapria himalayana HOM05D004858 ORTHO05D005600 1.4e-07 60.1 43 60.5


User provided reference genes

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