Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow3G4509 Salvia bowleyana HOM05D004693 ORTHO05D005545 2.4e-107 392.1 193 100.0
MSTRG.23575 Avicennia marina HOM05D004693 ORTHO05D005545 1.4e-67 260.0 157 79.6
SGA_v2.0_scaffold115G32108 Striga asiatica HOM05D000286 ORTHO05D000170 2.0e-64 249.6 146 82.2
Migut.H00217 Erythranthe guttata HOM05D004693 ORTHO05D005545 3.3e-64 248.8 149 81.2
Hma1.2p1_1109F.1_g257990 Hydrangea macrophylla HOM05D004693 ORTHO05D005545 7.4e-64 247.7 156 77.6
Peaxi162Scf00501g00318 Petunia axillaris HOM05D004693 ORTHO05D005545 1.3e-63 246.9 158 75.3
Oeu010266.2 Olea europaea HOM05D004693 ORTHO05D005545 1.7e-63 246.5 146 80.8
Ah.16g101760 Amaranthus hybridus HOM05D004693 ORTHO05D005545 3.7e-63 245.4 152 78.3
CAN.G225.4 Capsicum annuum HOM05D004693 ORTHO05D005545 3.7e-63 245.4 171 71.3
Migut.L00317 Erythranthe guttata HOM05D004693 ORTHO05D005545 3.7e-63 245.4 141 82.3
Nitab4.5_0001217g0030 Nicotiana tabacum HOM05D004693 ORTHO05D005545 8.2e-63 244.2 152 75.7
TAR629G3320 Trochodendron aralioides HOM05D004693 ORTHO05D005545 8.2e-63 244.2 152 76.3
Sopen02g030740 Solanum pennellii HOM05D004693 ORTHO05D005545 1.1e-62 243.8 150 78.7
Solyc02g063170.3 Solanum lycopersicum HOM05D004693 ORTHO05D005545 4.1e-62 241.9 167 71.3
GSVIVG01031023001 Vitis vinifera HOM05D004693 ORTHO05D005545 4.1e-62 241.9 156 75.0
Manes.02G068600 Manihot esculenta HOM05D004693 ORTHO05D005545 5.3e-62 241.5 156 74.4
Nitab4.5_0000912g0240 Nicotiana tabacum HOM05D004693 ORTHO05D005545 5.3e-62 241.5 151 76.8
Dinv33946 Davidia involucrata HOM05D004693 ORTHO05D005545 7.0e-62 241.1 146 79.5
Nitab4.5_0000659g0050 Nicotiana tabacum HOM05D004693 ORTHO05D005545 9.1e-62 240.7 152 76.3
Hund13716 Selenicereus undatus HOM05D004693 ORTHO05D005545 9.1e-62 240.7 154 76.6
TWI77G0167 Tripterygium wilfordii HOM05D004693 ORTHO05D005545 9.1e-62 240.7 156 75.6
MSTRG.15294 Avicennia marina HOM05D004693 ORTHO05D005545 1.2e-61 240.4 165 72.1
Cc07_g08830 Coffea canephora HOM05D004693 ORTHO05D005545 1.2e-61 240.4 154 76.6
Potri.004G099500 Populus trichocarpa HOM05D004693 ORTHO05D005545 1.2e-61 240.4 154 77.3
PGSC0003DMG400024184 Solanum tuberosum HOM05D004693 ORTHO05D005545 2.0e-61 239.6 150 76.0
vmacro05556 Vaccinium macrocarpon HOM05D004693 ORTHO05D005545 2.0e-61 239.6 160 73.8
AUR62009000 Chenopodium quinoa HOM05D004693 ORTHO05D005545 2.6e-61 239.2 155 74.8
Sopen02g014240 Solanum pennellii HOM05D004693 ORTHO05D005545 2.6e-61 239.2 167 70.1
PGSC0003DMG401026407 Solanum tuberosum HOM05D004693 ORTHO05D005545 3.5e-61 238.8 150 77.3
AUR62023302 Chenopodium quinoa HOM05D004693 ORTHO05D005545 4.5e-61 238.4 155 74.2
Nn4g23871 Nelumbo nucifera HOM05D004693 ORTHO05D005545 5.9e-61 238.0 153 74.5
Solyc02g086050.3 Solanum lycopersicum HOM05D004693 ORTHO05D005545 5.9e-61 238.0 151 77.5
Actinidia15883 Actinidia chinensis HOM05D004693 ORTHO05D005545 7.7e-61 237.7 156 74.4
Nitab4.5_0004398g0030 Nicotiana tabacum HOM05D004693 ORTHO05D005545 7.7e-61 237.7 165 69.1
Thecc.04G133900 Theobroma cacao HOM05D004693 ORTHO05D005545 7.7e-61 237.7 154 75.3
Atru.chr1.1699 Acer truncatum HOM05D004693 ORTHO05D005545 1.0e-60 237.3 155 74.8
Actinidia36320 Actinidia chinensis HOM05D004693 ORTHO05D005545 1.0e-60 237.3 170 70.0
Lj2A442G45 Lonicera japonica HOM05D004693 ORTHO05D005545 1.0e-60 237.3 158 73.4
TWI53G0853 Tripterygium wilfordii HOM05D004693 ORTHO05D005545 1.0e-60 237.3 156 72.4
Gohir.A12G053800 Gossypium hirsutum HOM05D004693 ORTHO05D005545 2.2e-60 236.1 154 74.7
Gorai.008G055600 Gossypium raimondii HOM05D004693 ORTHO05D005545 2.2e-60 236.1 154 74.7
Os01g0128300 Oryza sativa ssp. japonica HOM05D004693 ORTHO05D005545 2.2e-60 236.1 145 75.9
unitig_748.g8751 Utricularia gibba HOM05D004693 ORTHO05D005545 2.9e-60 235.7 148 74.3
SalBow5G5330 Salvia bowleyana HOM05D004693 ORTHO05D005545 3.8e-60 235.3 146 80.1
Gohir.D12G052500 Gossypium hirsutum HOM05D004693 ORTHO05D005545 6.5e-60 234.6 154 74.0
HanXRQChr12g0376541 Helianthus annuus HOM05D004693 ORTHO05D005545 6.5e-60 234.6 158 73.4
PSO478G2919 Papaver somniferum HOM05D004693 ORTHO05D005545 6.5e-60 234.6 149 77.2
Nn3g17869 Nelumbo nucifera HOM05D004693 ORTHO05D005545 1.1e-59 233.8 153 72.5
PSO017G3734 Papaver somniferum HOM05D004693 ORTHO05D005545 1.1e-59 233.8 149 77.2
Lsat_1_v5_gn_3_79761 Lactuca sativa HOM05D004693 ORTHO05D005545 1.9e-59 233.0 170 68.8
Zm00001eb335080 Zea mays HOM05D004693 ORTHO05D005545 1.9e-59 233.0 150 72.7
Ciclev10012575m.g Citrus clementina HOM05D004693 ORTHO05D005545 2.5e-59 232.6 195 63.6
CANSAT78G0919 Cannabis sativa HOM05D004693 ORTHO05D005545 4.2e-59 231.9 160 73.8
RcHm_v2.0_Chr7g0206351 Rosa chinensis HOM05D004693 ORTHO05D005545 4.2e-59 231.9 152 74.3
ECA246G3075 Erigeron canadensis HOM05D004693 ORTHO05D005545 5.5e-59 231.5 158 71.5
unitig_32.g11889 Utricularia gibba HOM05D004693 ORTHO05D005545 5.5e-59 231.5 156 69.9
PGR004G1354 Punica granatum HOM05D004693 ORTHO05D005545 7.2e-59 231.1 160 71.9
Sp5g22010 Schrenkiella parvula HOM05D004693 ORTHO05D005545 7.2e-59 231.1 151 73.5
TAR371G1203 Trochodendron aralioides HOM05D004693 ORTHO05D005545 7.2e-59 231.1 156 72.4
DCAR_025914 Daucus carota HOM05D004693 ORTHO05D005545 9.4e-59 230.7 148 73.6
Sed0027829 Sechium edule HOM05D004693 ORTHO05D005545 9.4e-59 230.7 155 72.9
Sabra17G0095200 Salix brachista HOM05D004693 ORTHO05D005545 1.2e-58 230.3 157 70.1
CsaV3_3G020700 Cucumis sativus L. HOM05D004693 ORTHO05D005545 1.6e-58 229.9 157 68.8
THA.LOC104805567 Tarenaya hassleriana HOM05D004693 ORTHO05D005545 1.6e-58 229.9 149 74.5
CARHR059530 Cardamine hirsuta HOM05D004693 ORTHO05D005545 3.6e-58 228.8 153 72.5
ClCG05G011670 Citrullus lanatus HOM05D004693 ORTHO05D005545 3.6e-58 228.8 155 70.3
Eucgr.F02496 Eucalyptus grandis HOM05D004693 ORTHO05D005545 3.6e-58 228.8 146 74.0
Thhalv10019078m.g Eutrema salsugineum HOM05D004693 ORTHO05D005545 3.6e-58 228.8 148 74.3
AL2G25440 Arabidopsis lyrata HOM05D004693 ORTHO05D005545 4.7e-58 228.4 153 72.5
Glyma.08G365700 Glycine max HOM05D004693 ORTHO05D005545 4.7e-58 228.4 160 68.8
DCAR_017191 Daucus carota HOM05D004693 ORTHO05D005545 8.0e-58 227.6 158 70.9
VMungo1383G0350 Vigna mungo HOM05D004693 ORTHO05D005545 1.0e-57 227.3 160 68.1
QL02p051402 Quercus lobata HOM05D004693 ORTHO05D005545 1.4e-57 226.9 144 76.4
COL.COLO4_09328 Corchorus olitorius HOM05D004693 ORTHO05D005545 1.8e-57 226.5 144 75.7
Zm00001eb125470 Zea mays HOM05D004693 ORTHO05D005545 1.8e-57 226.5 142 76.1
CAN.G625.24 Capsicum annuum HOM05D004693 ORTHO05D005545 2.3e-57 226.1 177 66.1
AT1G67080 Arabidopsis thaliana HOM05D004693 ORTHO05D005545 3.0e-57 225.7 153 69.9
BcaC03g14797 Brassica carinata HOM05D004693 ORTHO05D005545 3.0e-57 225.7 151 71.5
A02p13930 Brassica napus HOM05D004693 ORTHO05D005545 3.0e-57 225.7 151 71.5
C02p22440 Brassica napus HOM05D004693 ORTHO05D005545 3.0e-57 225.7 151 71.5
BolC2t08398H Brassica oleracea HOM05D004693 ORTHO05D005545 3.0e-57 225.7 151 71.5
BraA02t06454Z Brassica rapa HOM05D004693 ORTHO05D005545 3.0e-57 225.7 151 71.5
Prupe.5G053500 Prunus persica HOM05D004693 ORTHO05D005545 3.9e-57 225.3 156 71.2
Carub.0002s1337 Capsella rubella HOM05D004693 ORTHO05D005545 6.7e-57 224.6 151 72.8
FvH4_5g20670 Fragaria vesca HOM05D004693 ORTHO05D005545 6.7e-57 224.6 146 74.7
BcaB05g24236 Brassica carinata HOM05D004693 ORTHO05D005545 8.8e-57 224.2 151 70.9
Phvul.008G005900 Phaseolus vulgaris HOM05D004693 ORTHO05D005545 8.8e-57 224.2 169 65.7
ATR1125G077 Amborella trichopoda HOM05D004693 ORTHO05D005545 1.1e-56 223.8 150 71.3
Sabra04G0080500 Salix brachista HOM05D004693 ORTHO05D005545 1.1e-56 223.8 181 65.2
Ca_04048_v3 Cicer arietinum L. HOM05D004693 ORTHO05D005545 1.5e-56 223.4 162 66.0
MD06G1045700 Malus domestica HOM05D004693 ORTHO05D005545 2.0e-56 223.0 156 69.9
Psat3g205360 Pisum sativum HOM05D004693 ORTHO05D005545 2.0e-56 223.0 170 61.8
Glyma.18G296600 Glycine max HOM05D004693 ORTHO05D005545 4.4e-56 221.9 160 66.9
Phvul.007G143200 Phaseolus vulgaris HOM05D004693 ORTHO05D005545 4.4e-56 221.9 169 65.7
MD09G1253000 Malus domestica HOM05D004693 ORTHO05D005545 5.7e-56 221.5 152 71.7
FAN13G1234 Fragaria x ananassa HOM05D004693 ORTHO05D005545 7.4e-56 221.1 144 73.6
Sed0024744 Sechium edule HOM05D004693 ORTHO05D005545 7.4e-56 221.1 158 68.4
MD00G1132400 Malus domestica HOM05D004693 ORTHO05D005545 9.7e-56 220.7 146 72.6
Medtr6g025680 Medicago truncatula HOM05D004693 ORTHO05D005545 1.3e-55 220.3 156 66.0
Medtr7g007280 Medicago truncatula HOM05D004693 ORTHO05D005545 1.7e-55 219.9 162 64.8
Medtr6g018550 Medicago truncatula HOM05D004693 ORTHO05D005545 3.7e-55 218.8 156 65.4
Prupe.3G157500 Prunus persica HOM05D004693 ORTHO05D005545 6.3e-55 218.0 151 72.8
Lj1g0002546 Lotus japonicus HOM05D004693 ORTHO05D005545 8.2e-55 217.6 148 70.3
arahy.Tifrunner.gnm1.ann1.GG98DF Arachis hypogaea HOM05D004693 ORTHO05D005545 3.1e-54 215.7 151 68.9
arahy.Tifrunner.gnm1.ann1.INX0GQ Arachis hypogaea HOM05D004693 ORTHO05D005545 3.1e-54 215.7 151 68.9
Glyma.19G047800 Glycine max HOM05D004693 ORTHO05D005545 5.3e-54 214.9 156 65.4
TPR.G9726 Trifolium pratense HOM05D004693 ORTHO05D005545 2.0e-53 213.0 162 61.1
HPP92_021861 Vanilla planifolia HOM05D004693 ORTHO05D005545 2.0e-53 213.0 146 67.1
Aa31LG2G3480 Aethionema arabicum HOM05D004693 ORTHO05D005545 3.5e-53 212.2 150 65.3
Lj2g0008970 Lotus japonicus HOM05D004693 ORTHO05D005545 3.5e-53 212.2 147 66.7
Sed0014747 Sechium edule HOM05D004693 ORTHO05D005545 3.5e-53 212.2 158 64.6
TPR.G32451 Trifolium pratense HOM05D004693 ORTHO05D005545 3.5e-53 212.2 156 64.1
SEGI_37456 Sequoiadendron giganteum HOM05D004693 ORTHO05D005545 1.7e-52 209.9 160 62.5
Lalb_Chr17g0335881 Lupinus albus HOM05D004693 ORTHO05D005545 5.0e-52 208.4 156 63.5
Lalb_Chr21g0317811 Lupinus albus HOM05D004693 ORTHO05D005545 5.0e-52 208.4 146 68.5
Potri.017G114900 Populus trichocarpa HOM05D004693 ORTHO05D005545 2.1e-50 203.0 156 66.7
PGSC0003DMG402019589 Solanum tuberosum HOM05D004693 ORTHO05D005545 1.0e-49 200.7 157 63.1
EL10Ac2g04567 Beta vulgaris HOM05D004693 ORTHO05D005545 1.4e-49 200.3 151 67.5
MELO3C023805.2 Cucumis melo HOM05D004693 ORTHO05D005545 5.2e-49 198.4 129 70.5
Nitab4.5_0002207g0070 Nicotiana tabacum HOM05D004693 ORTHO05D005545 2.0e-48 196.4 129 70.5
Solyc03g034240.4 Solanum lycopersicum HOM05D004693 ORTHO05D005545 2.0e-48 196.4 157 61.1
Sopen03g007020 Solanum pennellii HOM05D004693 ORTHO05D005545 4.4e-48 195.3 157 60.5
Pp3c12_21540 Physcomitrium patens HOM05D004693 ORTHO05D005545 9.7e-48 194.1 154 58.4
AagrBONN_evm.TU.Sc2ySwM_362.1317 Anthoceros agrestis HOM05D004693 ORTHO05D005545 1.8e-46 189.9 149 58.4
Mapoly0134s0007 Marchantia polymorpha HOM05D004693 ORTHO05D005545 7.7e-45 184.5 140 60.7
SGA_v2.0_scaffold33G13498 Striga asiatica HOM05D004693 ORTHO05D005545 2.9e-44 182.6 103 88.3
Eucgr.F02495 Eucalyptus grandis HOM05D004693 ORTHO05D005545 1.1e-43 180.6 124 67.7
Pp3c3_37490 Physcomitrium patens HOM05D004693 ORTHO05D005545 5.5e-43 178.3 178 48.9
SMO356G0314 Selaginella moellendorffii HOM05D004693 ORTHO05D005545 7.2e-43 177.9 139 54.0
Aqoxy3G00271 Aquilegia oxysepala HOM05D004693 ORTHO05D005545 3.4e-40 169.1 175 57.7
HanXRQChr15g0471501 Helianthus annuus HOM05D004693 ORTHO05D005545 7.5e-40 167.9 108 75.0
Peaxi162Scf00394g00618 Petunia axillaris HOM05D004693 ORTHO05D005545 1.8e-38 163.3 156 54.5
HPP92_000177 Vanilla planifolia HOM05D004693 ORTHO05D005545 1.8e-38 163.3 132 62.1
Psat1g081400 Pisum sativum HOM05D004693 ORTHO05D005545 5.5e-35 151.8 115 65.2
Peaxi162Scf00205g00220 Petunia axillaris HOM05D004693 ORTHO05D005545 8.0e-34 147.9 127 58.3
VMungo0464G1881 Vigna mungo HOM05D004693 ORTHO05D005545 2.3e-33 146.4 115 67.0
CiPaw.04G042100 Carya illinoinensis HOM05D000286 ORTHO05D000170 1.2e-32 144.1 154 51.9
Duzib133G0419 Durio zibethinus HOM05D004693 ORTHO05D005545 1.2e-32 144.1 158 51.3
FAN18G0638 Fragaria x ananassa HOM05D000077 ORTHO05D005545 4.6e-29 132.1 144 51.4
CDE12G0456 Ceratophyllum demersum HOM05D001541 ORTHO05D001465 1.9e-27 126.7 144 48.6
Nitab4.5_0002207g0120 Nicotiana tabacum HOM05D004693 ORTHO05D005545 2.8e-26 122.9 151 45.0
MD06G1045600 Malus domestica HOM05D004693 ORTHO05D005545 1.5e-24 117.1 162 42.6
Cpa.g.sc282.10 Carica papaya HOM05D004693 ORTHO05D005545 3.4e-24 115.9 79 73.4
AagrBONN_evm.TU.Sc2ySwM_362.1343 Anthoceros agrestis HOM05D004693 ORTHO05D005545 1.4e-22 110.5 79 63.3
PRCOL_00000715 Prasinoderma coloniale HOM05D004693 ORTHO05D005545 5.0e-20 102.1 139 38.1
MCO01G364 Micromonas commoda HOM05D004693 ORTHO05D005545 2.1e-18 96.7 173 32.9
MCO02G342 Micromonas commoda HOM05D004693 ORTHO05D005545 2.9e-15 86.3 129 34.9
Phvul.004G065900 Phaseolus vulgaris HOM05D004693 ORTHO05D005545 3.7e-15 85.9 87 55.2
Cre03.g207000 Chlamydomonas reinhardtii HOM05D004693 ORTHO05D005545 8.3e-15 84.7 144 36.1
Cre06.g255300 Chlamydomonas reinhardtii HOM05D004693 ORTHO05D005545 3.0e-12 76.3 151 29.8
PRCOL_00005350 Prasinoderma coloniale HOM05D004693 ORTHO05D005545 5.1e-12 75.5 120 33.3
MCO03G104 Micromonas commoda HOM05D004693 ORTHO05D005545 1.2e-10 70.9 119 30.3
VMungo0251G1321 Vigna mungo HOM05D000154 ORTHO05D000092 1.4e-09 67.4 83 48.2
PRCOL_00000440 Prasinoderma coloniale HOM05D004693 ORTHO05D005545 1.8e-09 67.0 150 30.0


User provided reference genes

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