Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow3G4470 Salvia bowleyana HOM05D004924 ORTHO05D005896 2.8e-84 315.1 143 100.0
MSTRG.11290 Avicennia marina HOM05D004924 ORTHO05D005896 4.8e-68 261.2 138 79.0
MSTRG.11286 Avicennia marina HOM05D004924 ORTHO05D005896 8.2e-68 260.4 136 79.4
Oeu062709.1 Olea europaea HOM05D004924 ORTHO05D005896 1.7e-65 252.7 138 77.5
SGA_v2.0_scaffold108G30967 Striga asiatica HOM05D004924 ORTHO05D005896 2.9e-65 251.9 138 78.3
Migut.H02231 Erythranthe guttata HOM05D004924 ORTHO05D005896 1.4e-64 249.6 138 77.5
Oeu062710.1 Olea europaea HOM05D004924 ORTHO05D005896 1.0e-62 243.4 138 74.6
Potri.017G131900 Populus trichocarpa HOM05D004924 ORTHO05D005896 1.0e-62 243.4 134 74.6
Duzib133G0699 Durio zibethinus HOM05D004924 ORTHO05D005896 3.9e-62 241.5 134 73.9
Manes.01G120100 Manihot esculenta HOM05D004924 ORTHO05D005896 3.9e-62 241.5 135 74.8
Cc07_g13240 Coffea canephora HOM05D004924 ORTHO05D005896 3.3e-61 238.4 138 70.3
COL.COLO4_17898 Corchorus olitorius HOM05D004924 ORTHO05D005896 3.3e-61 238.4 134 72.4
DCAR_011635 Daucus carota HOM05D004924 ORTHO05D005896 7.4e-61 237.3 137 72.3
Eucgr.F02877 Eucalyptus grandis HOM05D004924 ORTHO05D005896 7.4e-61 237.3 135 72.6
Hma1.2p1_0158F.1_g070040 Hydrangea macrophylla HOM05D004924 ORTHO05D005896 7.4e-61 237.3 141 68.8
Eucgr.F02876 Eucalyptus grandis HOM05D004924 ORTHO05D005896 9.7e-61 236.9 135 71.9
TWI53G1907 Tripterygium wilfordii HOM05D004924 ORTHO05D005896 9.7e-61 236.9 136 72.8
Sopen11g006240 Solanum pennellii HOM05D004924 ORTHO05D005896 2.2e-60 235.7 134 73.1
Solyc11g011450.2 Solanum lycopersicum HOM05D004924 ORTHO05D005896 2.8e-60 235.3 134 73.1
PGSC0003DMG400013239 Solanum tuberosum HOM05D004924 ORTHO05D005896 2.8e-60 235.3 134 73.1
Gohir.A08G229800 Gossypium hirsutum HOM05D004924 ORTHO05D005896 3.7e-60 235.0 135 72.6
Thecc.04G063500 Theobroma cacao HOM05D004924 ORTHO05D005896 4.8e-60 234.6 134 72.4
Gorai.004G266800 Gossypium raimondii HOM05D004924 ORTHO05D005896 6.3e-60 234.2 135 72.6
Actinidia28798 Actinidia chinensis HOM05D004924 ORTHO05D005896 8.2e-60 233.8 129 72.9
Cfa007788 Carpinus fangiana HOM05D004924 ORTHO05D005896 8.2e-60 233.8 135 71.1
GSVIVG01021786001 Vitis vinifera HOM05D004924 ORTHO05D005896 8.2e-60 233.8 135 72.6
RcHm_v2.0_Chr3g0491661 Rosa chinensis HOM05D004924 ORTHO05D005896 1.1e-59 233.4 135 70.4
HanXRQChr14g0444631 Helianthus annuus HOM05D004924 ORTHO05D005896 1.4e-59 233.0 134 73.1
FvH4_1g30100 Fragaria vesca HOM05D004924 ORTHO05D005896 1.8e-59 232.6 135 70.4
unitig_699.g19298 Utricularia gibba HOM05D004924 ORTHO05D005896 1.8e-59 232.6 134 71.6
Nitab4.5_0001650g0010 Nicotiana tabacum HOM05D004924 ORTHO05D005896 2.4e-59 232.3 134 73.1
Peaxi162Scf00464g00014 Petunia axillaris HOM05D004924 ORTHO05D005896 2.4e-59 232.3 134 72.4
Atru.chr1.1951 Acer truncatum HOM05D004924 ORTHO05D005896 3.1e-59 231.9 133 71.4
Cfa007787 Carpinus fangiana HOM05D004924 ORTHO05D005896 5.3e-59 231.1 135 70.4
Cpa.g.sc116.75 Carica papaya HOM05D004924 ORTHO05D005896 7.0e-59 230.7 135 71.1
Haze_14284 Corylus avellana HOM05D004924 ORTHO05D005896 7.0e-59 230.7 135 71.1
QL02p059388 Quercus lobata HOM05D004924 ORTHO05D005896 9.1e-59 230.3 134 69.4
TAR622G1008 Trochodendron aralioides HOM05D004924 ORTHO05D005896 9.1e-59 230.3 135 71.1
FAN16G2823 Fragaria x ananassa HOM05D004924 ORTHO05D005896 1.2e-58 229.9 135 69.6
Lj6g0022987 Lotus japonicus HOM05D004924 ORTHO05D005896 1.2e-58 229.9 134 70.9
MD09G1269800 Malus domestica HOM05D004924 ORTHO05D005896 1.2e-58 229.9 135 69.6
vmacro18525 Vaccinium macrocarpon HOM05D004924 ORTHO05D005896 1.2e-58 229.9 134 72.4
CiPaw.03G073900 Carya illinoinensis HOM05D004924 ORTHO05D005896 2.0e-58 229.2 135 68.9
Glyma.18G041500 Glycine max HOM05D004924 ORTHO05D005896 2.0e-58 229.2 135 70.4
RcHm_v2.0_Chr3g0491901 Rosa chinensis HOM05D004924 ORTHO05D005896 2.0e-58 229.2 135 68.9
CiPaw.03G074000 Carya illinoinensis HOM05D004924 ORTHO05D005896 2.6e-58 228.8 135 68.1
Phvul.001G229100 Phaseolus vulgaris HOM05D004924 ORTHO05D005896 2.6e-58 228.8 135 69.6
Prupe.3G165600 Prunus persica HOM05D004924 ORTHO05D005896 2.6e-58 228.8 134 69.4
AL6G27940 Arabidopsis lyrata HOM05D004924 ORTHO05D005896 3.5e-58 228.4 134 71.6
arahy.Tifrunner.gnm1.ann1.FH3EPN Arachis hypogaea HOM05D004924 ORTHO05D005896 3.5e-58 228.4 135 71.1
CAN.G222.65 Capsicum annuum HOM05D004924 ORTHO05D005896 3.5e-58 228.4 134 70.1
Nn3g18375 Nelumbo nucifera HOM05D004924 ORTHO05D005896 3.5e-58 228.4 140 67.9
Ca_17087_v3 Cicer arietinum L. HOM05D004924 ORTHO05D005896 4.5e-58 228.0 135 70.4
Cfa007789 Carpinus fangiana HOM05D004924 ORTHO05D005896 5.9e-58 227.6 135 68.1
Lsat_1_v5_gn_2_68260 Lactuca sativa HOM05D004924 ORTHO05D005896 5.9e-58 227.6 134 70.1
Lalb_Chr15g0085011 Lupinus albus HOM05D004924 ORTHO05D005896 5.9e-58 227.6 135 71.1
ATR0753G109 Amborella trichopoda HOM05D004924 ORTHO05D005896 7.7e-58 227.3 138 68.1
VMungo1383G1490 Vigna mungo HOM05D004924 ORTHO05D005896 7.7e-58 227.3 135 69.6
FAN19G2011 Fragaria x ananassa HOM05D004924 ORTHO05D005896 1.0e-57 226.9 135 67.4
Medtr3g065140 Medicago truncatula HOM05D004924 ORTHO05D005896 1.0e-57 226.9 134 70.1
Psat5g120000 Pisum sativum HOM05D004924 ORTHO05D005896 1.0e-57 226.9 135 71.1
Potri.017G132500 Populus trichocarpa HOM05D004924 ORTHO05D005896 1.3e-57 226.5 127 71.7
RcHm_v2.0_Chr3g0491731 Rosa chinensis HOM05D004924 ORTHO05D005896 1.3e-57 226.5 135 68.9
SEGI_33705 Sequoiadendron giganteum HOM05D004924 ORTHO05D005896 1.3e-57 226.5 135 68.1
ClCG08G009070 Citrullus lanatus HOM05D004924 ORTHO05D005896 1.7e-57 226.1 135 68.1
FvH4_1g27730 Fragaria vesca HOM05D004924 ORTHO05D005896 1.7e-57 226.1 134 67.9
QL02p059397 Quercus lobata HOM05D004924 ORTHO05D005896 1.7e-57 226.1 134 68.7
AT5G16940 Arabidopsis thaliana HOM05D004924 ORTHO05D005896 2.2e-57 225.7 134 69.4
ECA238G2739 Erigeron canadensis HOM05D004924 ORTHO05D005896 2.2e-57 225.7 131 67.9
Gohir.A08G229900 Gossypium hirsutum HOM05D004924 ORTHO05D005896 2.2e-57 225.7 135 69.6
Gohir.D08G250200 Gossypium hirsutum HOM05D004924 ORTHO05D005896 2.2e-57 225.7 135 69.6
Lj2C517G6 Lonicera japonica HOM05D004924 ORTHO05D005896 2.2e-57 225.7 138 66.7
CARHR196230 Cardamine hirsuta HOM05D004924 ORTHO05D005896 2.9e-57 225.3 134 70.1
Carub.0006s1515 Capsella rubella HOM05D004924 ORTHO05D005896 3.8e-57 224.9 134 70.1
Thhalv10016053m.g Eutrema salsugineum HOM05D004924 ORTHO05D005896 3.8e-57 224.9 134 68.7
CANSAT64G2411 Cannabis sativa HOM05D004924 ORTHO05D005896 5.0e-57 224.6 134 70.1
Sed0017700 Sechium edule HOM05D004924 ORTHO05D005896 5.0e-57 224.6 133 66.9
FAN23G2495 Fragaria x ananassa HOM05D004924 ORTHO05D005896 6.5e-57 224.2 135 68.1
CSS0001998 Camellia sinensis var. sinensis HOM05D004924 ORTHO05D005896 8.5e-57 223.8 135 69.6
Ciclev10013082m.g Citrus clementina HOM05D004924 ORTHO05D005896 1.1e-56 223.4 134 66.4
A03p08080 Brassica napus HOM05D004924 ORTHO05D005896 1.5e-56 223.0 134 69.4
BraA03t10133Z Brassica rapa HOM05D004924 ORTHO05D005896 1.5e-56 223.0 134 69.4
Psat5g119920 Pisum sativum HOM05D004924 ORTHO05D005896 1.5e-56 223.0 135 71.1
THA.LOC104820884 Tarenaya hassleriana HOM05D004924 ORTHO05D005896 1.9e-56 222.6 132 70.5
TPR.G23209 Trifolium pratense HOM05D004924 ORTHO05D005896 1.9e-56 222.6 134 70.1
Sc11g0004600 Simmondsia chinensis HOM05D004924 ORTHO05D005896 4.2e-56 221.5 133 69.9
Glyma.18G041600 Glycine max HOM05D004924 ORTHO05D005896 7.2e-56 220.7 135 69.6
MELO3C026504.2 Cucumis melo HOM05D004924 ORTHO05D005896 9.4e-56 220.3 135 66.7
MBI19_g44856_MAGBIO Magnolia biondii HOM05D004924 ORTHO05D005896 1.2e-55 219.9 129 70.5
PGR004G0557 Punica granatum HOM05D004924 ORTHO05D005896 1.2e-55 219.9 132 68.9
RcHm_v2.0_Chr3g0491691 Rosa chinensis HOM05D004924 ORTHO05D005896 1.2e-55 219.9 135 68.1
Aa31LG11G12660 Aethionema arabicum HOM05D004924 ORTHO05D005896 1.6e-55 219.5 134 67.2
FAN10G2899 Fragaria x ananassa HOM05D004924 ORTHO05D005896 1.6e-55 219.5 135 66.7
BcaB01g04965 Brassica carinata HOM05D004924 ORTHO05D005896 2.1e-55 219.2 134 67.9
BcaB01g05238 Brassica carinata HOM05D004924 ORTHO05D005896 4.7e-55 218.0 133 68.4
Sabra17G0109900 Salix brachista HOM05D004924 ORTHO05D005896 4.7e-55 218.0 126 71.4
Os09g0397700 Oryza sativa ssp. japonica HOM05D004924 ORTHO05D005896 8.0e-55 217.2 129 72.9
C03p09350 Brassica napus HOM05D004924 ORTHO05D005896 1.8e-54 216.1 133 67.7
CsaV3_6G036070 Cucumis sativus L. HOM05D004924 ORTHO05D005896 2.3e-54 215.7 135 65.2
PSO017G6719 Papaver somniferum HOM05D004924 ORTHO05D005896 2.3e-54 215.7 130 66.2
Psat5g119960 Pisum sativum HOM05D004924 ORTHO05D005896 8.8e-54 213.8 135 68.1
Glyma.11G215100 Glycine max HOM05D004924 ORTHO05D005896 1.2e-53 213.4 131 67.2
BolC3t13429H Brassica oleracea HOM05D004924 ORTHO05D005896 2.0e-53 212.6 133 66.9
Gohir.D08G250300 Gossypium hirsutum HOM05D004924 ORTHO05D005896 2.0e-53 212.6 121 71.9
MD09G1269600 Malus domestica HOM05D004924 ORTHO05D005896 2.0e-53 212.6 135 65.2
Potri.017G132000 Populus trichocarpa HOM05D004924 ORTHO05D005896 2.6e-53 212.2 131 67.2
Zm00001eb099200 Zea mays HOM05D004924 ORTHO05D005896 2.6e-53 212.2 129 69.8
EL10Ac3g05220 Beta vulgaris HOM05D004924 ORTHO05D005896 1.7e-52 209.5 134 65.7
Sabra17G0109800 Salix brachista HOM05D004924 ORTHO05D005896 1.4e-51 206.5 120 72.5
Aqoxy2G04179 Aquilegia oxysepala HOM05D004924 ORTHO05D005896 2.4e-51 205.7 133 66.2
Gorai.004G267000 Gossypium raimondii HOM05D004924 ORTHO05D005896 5.3e-51 204.5 121 70.2
Lsat_1_v5_gn_3_63921 Lactuca sativa HOM05D004924 ORTHO05D005896 5.3e-51 204.5 128 66.4
MD17G1267700 Malus domestica HOM05D004924 ORTHO05D005896 1.2e-50 203.4 121 69.4
AUR62006044 Chenopodium quinoa HOM05D004924 ORTHO05D005896 1.6e-50 203.0 131 65.6
AUR62035584 Chenopodium quinoa HOM05D004924 ORTHO05D005896 3.5e-50 201.8 131 64.9
Peaxi162Scf00464g00013 Petunia axillaris HOM05D004924 ORTHO05D005896 4.5e-50 201.4 173 54.9
Pp3c3_1640 Physcomitrium patens HOM05D004924 ORTHO05D005896 4.5e-50 201.4 134 64.9
HanXRQChr15g0482911 Helianthus annuus HOM05D004924 ORTHO05D005896 7.7e-50 200.7 125 66.4
Zm00001eb099210 Zea mays HOM05D004924 ORTHO05D005896 2.2e-49 199.1 129 66.7
MELO3C022822.2 Cucumis melo HOM05D004924 ORTHO05D005896 2.9e-49 198.7 123 65.9
Ciclev10013505m.g Citrus clementina HOM05D004924 ORTHO05D005896 1.1e-48 196.8 126 62.7
Ah.13g070610 Amaranthus hybridus HOM05D004924 ORTHO05D005896 1.9e-48 196.1 133 60.9
Mapoly0175s0005 Marchantia polymorpha HOM05D004924 ORTHO05D005896 2.5e-48 195.7 131 61.8
ClCG03G008860 Citrullus lanatus HOM05D004924 ORTHO05D005896 4.2e-48 194.9 119 67.2
MD17G1267500 Malus domestica HOM05D004924 ORTHO05D005896 6.1e-47 191.0 121 65.3
CsaV3_5G023900 Cucumis sativus L. HOM05D004924 ORTHO05D005896 1.8e-46 189.5 116 67.2
SMO134G0286 Selaginella moellendorffii HOM05D004924 ORTHO05D005896 1.8e-46 189.5 130 59.2
Gohir.A10G199166 Gossypium hirsutum HOM05D004924 ORTHO05D005896 5.2e-46 188.0 135 58.5
Gohir.A04G085566 Gossypium hirsutum HOM05D004924 ORTHO05D005896 2.2e-44 182.6 135 59.3
Zm00001eb099190 Zea mays HOM05D004924 ORTHO05D005896 3.1e-43 178.7 101 71.3
AagrBONN_evm.TU.Sc2ySwM_117.508 Anthoceros agrestis HOM05D004924 ORTHO05D005896 4.1e-43 178.3 129 57.4
SMO182G0004 Selaginella moellendorffii HOM05D004924 ORTHO05D005896 4.1e-43 178.3 130 56.9
Zm00001eb099170 Zea mays HOM05D004924 ORTHO05D005896 7.0e-43 177.6 101 69.3
SMO134G0172 Selaginella moellendorffii HOM05D004924 ORTHO05D005896 4.5e-42 174.9 130 55.4
Thecc.K0008300 Theobroma cacao HOM05D004924 ORTHO05D005896 1.1e-40 170.2 96 76.0
Glyma.11G214900 Glycine max HOM05D004924 ORTHO05D005896 7.2e-40 167.5 136 58.8
Ah.13g070620 Amaranthus hybridus HOM05D004924 ORTHO05D005896 4.7e-39 164.9 123 58.5
AUR62006043 Chenopodium quinoa HOM05D004924 ORTHO05D005896 5.2e-38 161.4 125 58.4
AUR62035585 Chenopodium quinoa HOM05D004924 ORTHO05D005896 2.2e-36 156.0 122 54.9
Lj2C517T7 Lonicera japonica HOM05D004924 ORTHO05D005896 1.0e-33 147.1 96 64.6
MD09G1269100 Malus domestica HOM05D004924 ORTHO05D005896 6.6e-33 144.4 98 61.2
Gorai.004G266900 Gossypium raimondii HOM05D004924 ORTHO05D005896 2.8e-31 139.0 85 69.4
PRCOL_00006023 Prasinoderma coloniale HOM05D004924 ORTHO05D005896 6.1e-31 137.9 145 42.1
Nitab4.5_0006562g0060 Nicotiana tabacum HOM05D004924 ORTHO05D005896 3.4e-29 132.1 75 73.3
FAN28G0301 Fragaria x ananassa HOM05D004924 ORTHO05D005896 1.6e-26 123.2 70 72.9
Lj1P958T70 Lonicera japonica HOM05D004924 ORTHO05D005896 1.5e-24 116.7 74 67.6
Gohir.A06G089850 Gossypium hirsutum HOM05D004924 ORTHO05D005896 3.6e-23 112.1 111 48.6
Gohir.D08G250250 Gossypium hirsutum HOM05D004924 ORTHO05D005896 3.7e-20 102.1 63 69.8
Zm00001eb099180 Zea mays HOM05D004924 ORTHO05D005896 1.9e-19 99.8 80 57.5
Gohir.D06G065233 Gossypium hirsutum HOM05D004924 ORTHO05D005896 3.2e-19 99.0 78 55.1


User provided reference genes

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