Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow3G4435 Salvia bowleyana HOM05D004237 ORTHO05D005002 1.7e-179 632.9 395 100.0
Sopen02g035740 Solanum pennellii HOM05D004237 ORTHO05D005002 5.1e-120 435.3 395 62.8
CSS0027261 Camellia sinensis var. sinensis HOM05D004237 ORTHO05D005002 3.3e-119 432.6 408 64.7
Cc07_g08200 Coffea canephora HOM05D004237 ORTHO05D005002 4.1e-117 425.6 395 66.8
Solyc02g091090.4 Solanum lycopersicum HOM05D004237 ORTHO05D005002 9.1e-117 424.5 386 63.0
Nitab4.5_0002248g0060 Nicotiana tabacum HOM05D004237 ORTHO05D005002 1.3e-115 420.6 407 61.9
Dinv14873 Davidia involucrata HOM05D004237 ORTHO05D005002 4.4e-111 405.6 404 63.1
Oeu047420.1 Olea europaea HOM05D004237 ORTHO05D005002 2.8e-110 402.9 395 60.8
Hund16204 Selenicereus undatus HOM05D004237 ORTHO05D005002 7.7e-108 394.8 403 58.6
EL10Ac2g04487 Beta vulgaris HOM05D004237 ORTHO05D005002 5.0e-107 392.1 400 61.8
Sabra04G0058600 Salix brachista HOM05D004237 ORTHO05D005002 8.0e-105 384.8 414 59.2
Gohir.D05G281200 Gossypium hirsutum HOM05D004237 ORTHO05D005002 1.0e-104 384.4 411 58.6
MD09G1261100 Malus domestica HOM05D004237 ORTHO05D005002 3.0e-104 382.9 416 63.9
SGA_v2.0_scaffold149G36490 Striga asiatica HOM05D004237 ORTHO05D005002 1.2e-103 380.9 407 55.5
Gorai.009G294600 Gossypium raimondii HOM05D004237 ORTHO05D005002 1.5e-103 380.6 411 58.2
Gohir.A05G279600 Gossypium hirsutum HOM05D004237 ORTHO05D005002 3.3e-103 379.4 411 57.9
Thecc.10G175300 Theobroma cacao HOM05D004237 ORTHO05D005002 7.5e-103 378.3 412 64.1
Prupe.3G158400 Prunus persica HOM05D004237 ORTHO05D005002 9.7e-103 377.9 413 60.3
Actinidia17655 Actinidia chinensis HOM05D004237 ORTHO05D005002 1.4e-101 374.0 387 55.8
Duzib106G0201 Durio zibethinus HOM05D004237 ORTHO05D005002 1.4e-101 374.0 411 61.1
FvH4_7g06071 Fragaria vesca HOM05D004237 ORTHO05D005002 3.1e-101 372.9 413 59.1
CiPaw.03G068200 Carya illinoinensis HOM05D004237 ORTHO05D005002 7.0e-101 371.7 398 56.5
FAN06G1641 Fragaria x ananassa HOM05D004237 ORTHO05D005002 7.0e-101 371.7 412 60.0
TAR633G2403 Trochodendron aralioides HOM05D004237 ORTHO05D005002 2.0e-100 370.2 400 60.5
Potri.004G088000 Populus trichocarpa HOM05D004237 ORTHO05D005002 2.7e-100 369.8 408 60.8
Migut.H00265 Erythranthe guttata HOM05D004237 ORTHO05D005002 1.0e-99 367.9 408 60.8
Atru.chr4.1671 Acer truncatum HOM05D004237 ORTHO05D005002 1.3e-99 367.5 402 61.9
CAN.G625.84 Capsicum annuum HOM05D004237 ORTHO05D005002 2.9e-99 366.3 395 53.9
Manes.03G011500 Manihot esculenta HOM05D004237 ORTHO05D005002 4.2e-98 362.5 405 62.0
DCAR_025876 Daucus carota HOM05D004237 ORTHO05D005002 1.2e-97 360.9 395 60.8
AUR62023243 Chenopodium quinoa HOM05D004237 ORTHO05D005002 1.6e-97 360.5 399 54.9
Cfa007846 Carpinus fangiana HOM05D004237 ORTHO05D005002 4.7e-97 359.0 420 54.8
Haze_14220 Corylus avellana HOM05D004237 ORTHO05D005002 1.4e-96 357.5 412 53.6
RcHm_v2.0_Chr7g0221661 Rosa chinensis HOM05D004237 ORTHO05D005002 1.4e-96 357.5 408 57.6
Rhsim08G0085800 Rhododendron simsii HOM05D004237 ORTHO05D005002 1.8e-96 357.1 404 61.1
Sc11g0008610 Simmondsia chinensis HOM05D004237 ORTHO05D005002 8.3e-94 348.2 398 51.8
HanXRQChr09g0262291 Helianthus annuus HOM05D004237 ORTHO05D005002 3.1e-93 346.3 395 57.2
CANSAT54G2538 Cannabis sativa HOM05D004237 ORTHO05D005002 1.0e-91 341.3 437 57.9
PGR004G2154 Punica granatum HOM05D004237 ORTHO05D005002 3.8e-91 339.3 421 59.6
Phvul.008G233700 Phaseolus vulgaris HOM05D004237 ORTHO05D005002 1.9e-90 337.0 395 55.4
Nn3g18884 Nelumbo nucifera HOM05D004237 ORTHO05D005002 4.2e-90 335.9 409 57.0
Aqoxy5G01640 Aquilegia oxysepala HOM05D004237 ORTHO05D005002 2.8e-89 333.2 400 59.8
Glyma.02G247200 Glycine max HOM05D004237 ORTHO05D005002 1.4e-88 330.9 395 56.7
ECA232G1788 Erigeron canadensis HOM05D004237 ORTHO05D005002 2.0e-87 327.0 397 49.6
GSVIVG01030867001 Vitis vinifera HOM05D004237 ORTHO05D005002 7.5e-87 325.1 395 53.2
Lsat_1_v5_gn_4_154701 Lactuca sativa HOM05D004237 ORTHO05D005002 9.8e-87 324.7 398 58.5
ClCG05G010910 Citrullus lanatus HOM05D004237 ORTHO05D005002 2.2e-86 323.6 419 56.8
Hma1.2p1_3512F.1_g336510 Hydrangea macrophylla HOM05D004237 ORTHO05D005002 3.5e-84 316.2 395 49.9
CsaV3_3G021670 Cucumis sativus L. HOM05D004237 ORTHO05D005002 4.5e-84 315.8 421 54.6
MELO3C020294.2 Cucumis melo HOM05D004237 ORTHO05D005002 8.6e-83 311.6 428 52.1
Sed0014224 Sechium edule HOM05D004237 ORTHO05D005002 1.9e-82 310.5 398 54.0
Eucgr.F02819 Eucalyptus grandis HOM05D004237 ORTHO05D005002 2.5e-82 310.1 435 44.1
arahy.Tifrunner.gnm1.ann1.MQJ11K Arachis hypogaea HOM05D004237 ORTHO05D005002 1.2e-81 307.8 404 57.2
unitig_899.g14517 Utricularia gibba HOM05D004236 ORTHO05D004903 1.0e-80 304.7 405 53.8
arahy.Tifrunner.gnm1.ann1.68W1N1 Arachis hypogaea HOM05D004237 ORTHO05D005002 7.5e-79 298.5 403 55.8
QL11p004173 Quercus lobata HOM05D004237 ORTHO05D005002 4.9e-78 295.8 461 43.2
SHI19441 Sapria himalayana HOM05D004237 ORTHO05D005002 6.4e-78 295.4 395 43.3
Lalb_Chr10g0104521 Lupinus albus HOM05D004237 ORTHO05D005002 1.9e-77 293.9 395 57.2
Cpa.g.sc118.40 Carica papaya HOM05D004237 ORTHO05D005002 4.1e-77 292.7 400 49.8
LjContig00141g0018818 Lotus japonicus HOM05D004237 ORTHO05D005002 2.3e-75 287.0 395 55.9
TPR.G3499 Trifolium pratense HOM05D004237 ORTHO05D005002 3.3e-74 283.1 398 48.7
Psat2g041040 Pisum sativum HOM05D004237 ORTHO05D005002 2.3e-72 276.9 404 50.7
Nitab4.5_0004399g0090 Nicotiana tabacum HOM05D004237 ORTHO05D005002 1.2e-71 274.6 324 58.3
Ca_05866_v3 Cicer arietinum L. HOM05D004237 ORTHO05D005002 3.7e-70 269.6 397 55.7
Ca_29976_v3 Cicer arietinum L. HOM05D004237 ORTHO05D005002 3.7e-70 269.6 397 55.7
Peaxi162Scf00003g00001 Petunia axillaris HOM05D004237 ORTHO05D005002 1.2e-68 264.6 325 52.3
Medtr5g079680 Medicago truncatula HOM05D004237 ORTHO05D005002 1.0e-67 261.5 396 54.8
CDE02G0048 Ceratophyllum demersum HOM05D004237 ORTHO05D005002 5.2e-56 222.6 237 52.3
Lj2P435T33 Lonicera japonica HOM05D004237 ORTHO05D005002 6.4e-54 215.7 268 59.0
ATR0743G026 Amborella trichopoda HOM05D004237 ORTHO05D005002 1.5e-50 204.5 482 40.9
CDE09G1075 Ceratophyllum demersum HOM05D004237 ORTHO05D005002 3.3e-50 203.4 396 39.6
MBI08_g18909_MAGBIO Magnolia biondii HOM05D004237 ORTHO05D005002 1.4e-48 198.0 293 44.7
SEGI_05374 Sequoiadendron giganteum HOM05D004237 ORTHO05D005002 2.7e-44 183.7 455 38.7
AUR62023195 Chenopodium quinoa HOM05D004237 ORTHO05D005002 5.6e-42 176.0 341 38.1
SEGI_20207 Sequoiadendron giganteum HOM05D004237 ORTHO05D005002 7.3e-42 175.6 191 50.3
Cfa014954 Carpinus fangiana HOM05D004237 ORTHO05D005002 2.8e-41 173.7 265 41.9
MBI11_g07416_MAGBIO Magnolia biondii HOM05D004237 ORTHO05D005002 2.8e-41 173.7 175 49.7
Sc13g0000310 Simmondsia chinensis HOM05D004237 ORTHO05D005002 2.8e-41 173.7 171 52.0
Sabra16G0201600 Salix brachista HOM05D004237 ORTHO05D005002 4.8e-41 172.9 446 39.2
Haze_11643 Corylus avellana HOM05D004237 ORTHO05D005002 6.2e-41 172.6 267 41.2
Sabra17G0051800 Salix brachista HOM05D004237 ORTHO05D005002 8.1e-41 172.2 284 38.7
Cpa.g.sc83.32 Carica papaya HOM05D004237 ORTHO05D005002 5.3e-40 169.5 276 40.2
Glyma.14G069000 Glycine max HOM05D004237 ORTHO05D005002 4.5e-39 166.4 324 46.0
Medtr8g085190 Medicago truncatula HOM05D004237 ORTHO05D005002 4.5e-39 166.4 424 42.2
Psat7g073000 Pisum sativum HOM05D004237 ORTHO05D005002 4.5e-39 166.4 138 55.8
ATR0561G250 Amborella trichopoda HOM05D004237 ORTHO05D005002 7.6e-39 165.6 162 51.9
vmacro15560 Vaccinium macrocarpon HOM05D004237 ORTHO05D005002 7.6e-39 165.6 162 52.5
Eucgr.H02692 Eucalyptus grandis HOM05D004237 ORTHO05D005002 2.2e-38 164.1 132 59.8
Phvul.003G050200 Phaseolus vulgaris HOM05D004237 ORTHO05D005002 2.9e-38 163.7 279 39.4
Rhsim02G0061200 Rhododendron simsii HOM05D004237 ORTHO05D005002 3.8e-38 163.3 156 53.2
RhsimUnG0035800 Rhododendron simsii HOM05D004237 ORTHO05D005002 3.8e-38 163.3 156 53.2
Nitab4.5_0007828g0040 Nicotiana tabacum HOM05D004237 ORTHO05D005002 6.4e-38 162.5 158 53.8
Lalb_Chr07g0186771 Lupinus albus HOM05D004237 ORTHO05D005002 1.1e-37 161.8 271 39.5
Dinv27207 Davidia involucrata HOM05D004237 ORTHO05D005002 1.4e-37 161.4 423 38.5
Lj4g0001711 Lotus japonicus HOM05D004237 ORTHO05D005002 1.4e-37 161.4 447 36.2
Atru.chr4.1600 Acer truncatum HOM05D004237 ORTHO05D005002 1.9e-37 161.0 272 39.3
Hma1.2p1_2958F.1_g330800 Hydrangea macrophylla HOM05D004237 ORTHO05D005002 1.9e-37 161.0 175 50.3
Prupe.1G163000 Prunus persica HOM05D004237 ORTHO05D005002 1.9e-37 161.0 270 39.3
Sopen09g035130 Solanum pennellii HOM05D004237 ORTHO05D005002 2.4e-37 160.6 174 48.9
CAN.G1565.17 Capsicum annuum HOM05D004237 ORTHO05D005002 3.2e-37 160.2 161 52.2
HanXRQChr15g0484241 Helianthus annuus HOM05D004237 ORTHO05D005002 3.2e-37 160.2 395 32.4
CSS0022501 Camellia sinensis var. sinensis HOM05D004237 ORTHO05D005002 4.2e-37 159.8 162 51.2
Glyma.05G153300 Glycine max HOM05D004237 ORTHO05D005002 4.2e-37 159.8 165 50.9
TPR.G11799 Trifolium pratense HOM05D004237 ORTHO05D005002 4.2e-37 159.8 170 48.8
CiPaw.01G118000 Carya illinoinensis HOM05D004237 ORTHO05D005002 5.4e-37 159.5 425 38.6
Oeu025033.1 Olea europaea HOM05D004237 ORTHO05D005002 7.1e-37 159.1 258 38.8
Potri.017G058200 Populus trichocarpa HOM05D004237 ORTHO05D005002 7.1e-37 159.1 441 38.1
SGA_v2.0_scaffold31G12582 Striga asiatica HOM05D004237 ORTHO05D005002 7.1e-37 159.1 116 60.3
TAR636G2161 Trochodendron aralioides HOM05D004237 ORTHO05D005002 9.3e-37 158.7 128 55.5
CANSAT78G0306 Cannabis sativa HOM05D004237 ORTHO05D005002 1.2e-36 158.3 266 40.2
FvH4_4g13400 Fragaria vesca HOM05D004237 ORTHO05D005002 1.2e-36 158.3 187 47.1
Lsat_1_v5_gn_2_45661 Lactuca sativa HOM05D004237 ORTHO05D005002 1.2e-36 158.3 158 53.8
Manes.03G145100 Manihot esculenta HOM05D004237 ORTHO05D005002 1.2e-36 158.3 442 38.7
unitig_45.g31537 Utricularia gibba HOM05D004237 ORTHO05D005002 1.2e-36 158.3 144 50.7
unitig_578.g16513 Utricularia gibba HOM05D004237 ORTHO05D005002 1.2e-36 158.3 144 50.7
GSVIVG01021000001 Vitis vinifera HOM05D004237 ORTHO05D005002 1.2e-36 158.3 400 31.2
Mapoly0008s0013 Marchantia polymorpha HOM05D004237 ORTHO05D005002 1.6e-36 157.9 444 42.8
VMungo0251G2499 Vigna mungo HOM05D004237 ORTHO05D005002 1.6e-36 157.9 272 39.0
FAN12G1632 Fragaria x ananassa HOM05D004237 ORTHO05D005002 2.7e-36 157.1 187 46.5
CsaV3_2G011170 Cucumis sativus L. HOM05D004237 ORTHO05D005002 3.5e-36 156.8 198 42.4
MELO3C020354.2 Cucumis melo HOM05D004237 ORTHO05D005002 4.6e-36 156.4 198 42.4
FAN07G1461 Fragaria x ananassa HOM05D004237 ORTHO05D005002 6.0e-36 156.0 187 46.5
MD13G1282300 Malus domestica HOM05D004237 ORTHO05D005002 6.0e-36 156.0 207 43.0
Ca_17976_v3 Cicer arietinum L. HOM05D004237 ORTHO05D005002 1.8e-35 154.5 430 38.8
Potri.001G318600 Populus trichocarpa HOM05D004237 ORTHO05D005002 1.8e-35 154.5 439 39.6
arahy.Tifrunner.gnm1.ann1.BLV0FA Arachis hypogaea HOM05D004237 ORTHO05D005002 3.0e-35 153.7 458 34.5
arahy.Tifrunner.gnm1.ann1.T9JHLZ Arachis hypogaea HOM05D004237 ORTHO05D005002 3.0e-35 153.7 458 34.5
Actinidia11451 Actinidia chinensis HOM05D004237 ORTHO05D005002 3.9e-35 153.3 428 38.3
Dinv38185 Davidia involucrata HOM05D004237 ORTHO05D005002 3.9e-35 153.3 424 38.9
Gohir.A10G128300 Gossypium hirsutum HOM05D004237 ORTHO05D005002 5.1e-35 152.9 276 37.3
MSTRG.21980 Avicennia marina HOM05D004237 ORTHO05D005002 8.7e-35 152.1 421 37.1
DCAR_030819 Daucus carota HOM05D004237 ORTHO05D005002 1.1e-34 151.8 261 39.8
PGSC0003DMG400026424 Solanum tuberosum HOM05D004237 ORTHO05D005002 1.1e-34 151.8 427 38.2
CBR_g29388 Chara braunii HOM05D004237 ORTHO05D005002 1.9e-34 151.0 130 53.8
Peaxi162Scf00047g00110 Petunia axillaris HOM05D004237 ORTHO05D005002 5.6e-34 149.4 425 37.6
RcHm_v2.0_Chr4g0413771 Rosa chinensis HOM05D004237 ORTHO05D005002 5.6e-34 149.4 267 38.6
MD04G1016300 Malus domestica HOM05D004237 ORTHO05D005002 7.4e-34 149.1 442 34.4
Duzib212G0922 Durio zibethinus HOM05D004237 ORTHO05D005002 1.3e-33 148.3 278 36.0
Actinidia28992 Actinidia chinensis HOM05D004237 ORTHO05D005002 2.1e-33 147.5 426 38.3
CDE05G0646 Ceratophyllum demersum HOM05D004237 ORTHO05D005002 2.1e-33 147.5 172 45.3
Ciclev10004964m.g Citrus clementina HOM05D004237 ORTHO05D005002 4.8e-33 146.4 449 37.6
Oeu063463.1 Olea europaea HOM05D004237 ORTHO05D005002 4.8e-33 146.4 421 33.5
Manes.15G056100 Manihot esculenta HOM05D004237 ORTHO05D005002 6.2e-33 146.0 433 39.0
RcHm_v2.0_Chr1g0334211 Rosa chinensis HOM05D004237 ORTHO05D005002 8.1e-33 145.6 313 36.7
Solyc09g092210.4 Solanum lycopersicum HOM05D004237 ORTHO05D005002 8.1e-33 145.6 424 41.3
Aqoxy2G03968 Aquilegia oxysepala HOM05D004237 ORTHO05D005002 2.4e-32 144.1 452 37.4
Thecc.04G196500 Theobroma cacao HOM05D004237 ORTHO05D005002 5.3e-32 142.9 453 37.5
Migut.N00416 Erythranthe guttata HOM05D004237 ORTHO05D005002 7.6e-31 139.0 161 48.4
RcHm_v2.0_Chr1g0333491 Rosa chinensis HOM05D003866 ORTHO05D004508 2.2e-30 137.5 96 67.7
HPP92_024243 Vanilla planifolia HOM05D004237 ORTHO05D005002 4.9e-30 136.3 159 45.3
ECA238G4613 Erigeron canadensis HOM05D004237 ORTHO05D005002 8.4e-30 135.6 382 38.2
Sed0001983 Sechium edule HOM05D004237 ORTHO05D005002 7.1e-29 132.5 179 40.2
AUR62020847 Chenopodium quinoa HOM05D004237 ORTHO05D005002 2.7e-28 130.6 397 38.8
COL.COLO4_20213 Corchorus olitorius HOM05D004237 ORTHO05D005002 2.3e-27 127.5 181 40.9
Gorai.011G152800 Gossypium raimondii HOM05D004237 ORTHO05D005002 6.7e-27 125.9 257 35.8
Gohir.D10G137600 Gossypium hirsutum HOM05D004237 ORTHO05D005002 1.1e-26 125.2 259 35.5
QL06p026437 Quercus lobata HOM05D004237 ORTHO05D005002 4.8e-25 119.8 427 37.2
RcHm_v2.0_Chr1g0333501 Rosa chinensis HOM05D004237 ORTHO05D005002 2.9e-22 110.5 188 48.4
PSO017G6634 Papaver somniferum HOM05D004237 ORTHO05D005002 7.4e-18 95.9 167 38.3
Peaxi162Scf00013g03225 Petunia axillaris HOM05D004237 ORTHO05D005002 1.5e-07 61.6 43 65.1
SHI01026 Sapria himalayana HOM05D004237 ORTHO05D005002 2.0e-07 61.2 66 48.5


User provided reference genes

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