Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow3G4284 Salvia bowleyana HOM05D005052 ORTHO05D006226 1.2e-250 869.4 445 100.0
Migut.C00533 Erythranthe guttata HOM05D005052 ORTHO05D006226 1.8e-209 732.6 450 84.7
MSTRG.2728 Avicennia marina HOM05D005052 ORTHO05D006226 2.1e-207 725.7 450 83.3
SGA_v2.0_scaffold94G28549 Striga asiatica HOM05D005052 ORTHO05D006226 9.3e-203 710.3 449 82.0
Cc07_g11060 Coffea canephora HOM05D005052 ORTHO05D006226 6.7e-201 704.1 443 82.8
Oeu048477.1 Olea europaea HOM05D005052 ORTHO05D006226 1.1e-200 703.4 453 79.7
Nitab4.5_0008943g0020 Nicotiana tabacum HOM05D005052 ORTHO05D006226 8.2e-199 697.2 444 81.1
CAN.G1274.31 Capsicum annuum HOM05D005052 ORTHO05D006226 6.9e-198 694.1 445 81.1
Nitab4.5_0001892g0080 Nicotiana tabacum HOM05D005052 ORTHO05D006226 9.0e-198 693.7 444 81.1
Sopen02g028370 Solanum pennellii HOM05D005052 ORTHO05D006226 2.9e-196 688.7 444 79.7
Gohir.D12G058900 Gossypium hirsutum HOM05D005052 ORTHO05D006226 6.5e-196 687.6 447 79.9
Solyc02g083590.3 Solanum lycopersicum HOM05D005052 ORTHO05D006226 8.5e-196 687.2 444 79.7
PGSC0003DMG400003582 Solanum tuberosum HOM05D005052 ORTHO05D006226 5.5e-195 684.5 441 80.0
Peaxi162Scf00328g00523 Petunia axillaris HOM05D005052 ORTHO05D006226 7.2e-195 684.1 451 78.7
Gohir.A12G058900 Gossypium hirsutum HOM05D005052 ORTHO05D006226 1.2e-194 683.3 450 79.6
Gorai.008G062200 Gossypium raimondii HOM05D005052 ORTHO05D006226 7.9e-194 680.6 448 79.5
COL.COLO4_22462 Corchorus olitorius HOM05D005052 ORTHO05D006226 3.0e-193 678.7 449 79.3
Sabra05G0090900 Salix brachista HOM05D005052 ORTHO05D006226 1.1e-192 676.8 390 86.2
Dinv40116 Davidia involucrata HOM05D005052 ORTHO05D006226 2.0e-192 676.0 388 86.6
TWI53G1960 Tripterygium wilfordii HOM05D005052 ORTHO05D006226 2.5e-192 675.6 391 86.4
GSVIVG01018732001 Vitis vinifera HOM05D005052 ORTHO05D006226 7.4e-192 674.1 454 77.5
Actinidia22954 Actinidia chinensis HOM05D005052 ORTHO05D006226 2.2e-191 672.5 376 87.0
CiPaw.07G061100 Carya illinoinensis HOM05D005052 ORTHO05D006226 8.2e-191 670.6 392 84.7
Potri.005G110900 Populus trichocarpa HOM05D005052 ORTHO05D006226 1.1e-190 670.2 390 85.9
HanXRQChr13g0424561 Helianthus annuus HOM05D005052 ORTHO05D006226 5.3e-190 667.9 447 77.4
vmacro18426 Vaccinium macrocarpon HOM05D005052 ORTHO05D006226 5.3e-190 667.9 445 78.0
Atru.chr3.855 Acer truncatum HOM05D005052 ORTHO05D006226 6.9e-190 667.5 391 84.4
Thecc.01G014600 Theobroma cacao HOM05D005052 ORTHO05D006226 9.1e-190 667.2 456 77.0
ECA240G3065 Erigeron canadensis HOM05D005052 ORTHO05D006226 2.0e-189 666.0 444 76.4
VMungo1215G2918 Vigna mungo HOM05D005052 ORTHO05D006226 2.6e-189 665.6 427 79.9
CANSAT25G2560 Cannabis sativa HOM05D005052 ORTHO05D006226 4.5e-189 664.8 410 82.0
Glyma.11G078700 Glycine max HOM05D005052 ORTHO05D006226 4.5e-189 664.8 393 84.2
Eucgr.J02467 Eucalyptus grandis HOM05D005052 ORTHO05D006226 5.9e-189 664.5 386 85.0
Ca_24920_v3 Cicer arietinum L. HOM05D005052 ORTHO05D006226 1.0e-188 663.7 411 80.8
Cpa.g.sc6.286 Carica papaya HOM05D005052 ORTHO05D006226 1.7e-188 662.9 402 82.6
CiPaw.08G130500 Carya illinoinensis HOM05D005052 ORTHO05D006226 1.7e-188 662.9 392 83.4
Glyma.01G164300 Glycine max HOM05D005052 ORTHO05D006226 8.5e-188 660.6 395 84.1
RcHm_v2.0_Chr2g0099021 Rosa chinensis HOM05D005052 ORTHO05D006226 8.5e-188 660.6 410 80.2
Nn5g28565 Nelumbo nucifera HOM05D005052 ORTHO05D006226 1.9e-187 659.4 448 76.6
Sc03g0003700 Simmondsia chinensis HOM05D005052 ORTHO05D006226 1.9e-187 659.4 451 77.8
THA.LOC104821339 Tarenaya hassleriana HOM05D005052 ORTHO05D006226 3.2e-187 658.7 440 77.5
QL06p051082 Quercus lobata HOM05D005052 ORTHO05D006226 4.2e-187 658.3 406 81.0
Duzib147G0491 Durio zibethinus HOM05D005052 ORTHO05D006226 5.5e-187 657.9 397 83.1
MELO3C013755.2 Cucumis melo HOM05D005052 ORTHO05D006226 7.2e-187 657.5 395 82.5
CsaV3_3G000670 Cucumis sativus L. HOM05D005052 ORTHO05D006226 7.2e-187 657.5 395 82.8
CARHR281630 Cardamine hirsuta HOM05D005052 ORTHO05D006226 9.4e-187 657.1 412 81.6
Lj4A222T51 Lonicera japonica HOM05D005052 ORTHO05D006226 9.4e-187 657.1 478 73.6
arahy.Tifrunner.gnm1.ann1.1KVD1S Arachis hypogaea HOM05D005052 ORTHO05D006226 1.2e-186 656.8 442 77.1
arahy.Tifrunner.gnm1.ann1.PYN71E Arachis hypogaea HOM05D005052 ORTHO05D006226 1.2e-186 656.8 442 77.1
Lj2g0011110 Lotus japonicus HOM05D005052 ORTHO05D006226 1.2e-186 656.8 392 83.4
AL8G45470 Arabidopsis lyrata HOM05D005052 ORTHO05D006226 4.7e-186 654.8 418 80.4
ClCG10G000590 Citrullus lanatus HOM05D005052 ORTHO05D006226 4.7e-186 654.8 395 82.3
PGR102G0465 Punica granatum HOM05D005052 ORTHO05D006226 4.7e-186 654.8 448 75.7
Carub.0008s2837 Capsella rubella HOM05D005052 ORTHO05D006226 7.9e-186 654.1 441 77.1
Medtr5g022580 Medicago truncatula HOM05D005052 ORTHO05D006226 7.9e-186 654.1 390 82.8
BcaB04g20124 Brassica carinata HOM05D005052 ORTHO05D006226 1.8e-185 652.9 445 76.4
MD15G1242600 Malus domestica HOM05D005052 ORTHO05D006226 8.8e-185 650.6 442 75.1
Rhsim08G0032100 Rhododendron simsii HOM05D005052 ORTHO05D006226 8.8e-185 650.6 432 76.9
TWI09G1579 Tripterygium wilfordii HOM05D005052 ORTHO05D006226 1.5e-184 649.8 455 75.4
Aa31LG1G14600 Aethionema arabicum HOM05D005052 ORTHO05D006226 2.0e-184 649.4 370 85.9
BcaC04g23113 Brassica carinata HOM05D005052 ORTHO05D006226 2.0e-184 649.4 414 79.2
C09p12030 Brassica napus HOM05D005052 ORTHO05D006226 2.0e-184 649.4 414 79.2
DCAR_022909 Daucus carota HOM05D005052 ORTHO05D006226 2.0e-184 649.4 444 76.6
Lalb_Chr09g0321611 Lupinus albus HOM05D005052 ORTHO05D006226 2.0e-184 649.4 445 76.4
Nn1g06262 Nelumbo nucifera HOM05D005052 ORTHO05D006226 2.0e-184 649.4 446 76.2
Prupe.7G171600 Prunus persica HOM05D005052 ORTHO05D006226 2.0e-184 649.4 457 74.2
AT5G66120 Arabidopsis thaliana HOM05D005052 ORTHO05D006226 2.6e-184 649.0 443 76.1
Thhalv10004219m.g Eutrema salsugineum HOM05D005052 ORTHO05D006226 2.6e-184 649.0 413 79.7
PSO541G6199 Papaver somniferum HOM05D005052 ORTHO05D006226 3.3e-184 648.7 451 74.9
Sp2g30570 Schrenkiella parvula HOM05D005052 ORTHO05D006226 3.3e-184 648.7 438 75.8
BolC9t54093H Brassica oleracea HOM05D005052 ORTHO05D006226 4.4e-184 648.3 440 76.1
Sed0003793 Sechium edule HOM05D005052 ORTHO05D006226 4.4e-184 648.3 382 83.8
Haze_03731 Corylus avellana HOM05D005052 ORTHO05D006226 7.4e-184 647.5 420 77.9
Phvul.002G106700 Phaseolus vulgaris HOM05D005052 ORTHO05D006226 7.4e-184 647.5 396 81.8
Gorai.007G192400 Gossypium raimondii HOM05D005052 ORTHO05D006226 9.7e-184 647.1 443 76.5
Lalb_Chr05g0212261 Lupinus albus HOM05D005052 ORTHO05D006226 9.7e-184 647.1 442 75.6
Cfa007001 Carpinus fangiana HOM05D005052 ORTHO05D006226 1.3e-183 646.7 406 79.6
TPR.G10542 Trifolium pratense HOM05D005052 ORTHO05D006226 1.7e-183 646.4 443 75.6
FAN28G0876 Fragaria x ananassa HOM05D005052 ORTHO05D006226 2.8e-183 645.6 438 75.6
vmacro22193 Vaccinium macrocarpon HOM05D005052 ORTHO05D006226 2.8e-183 645.6 514 69.3
Psat2g153160 Pisum sativum HOM05D005052 ORTHO05D006226 4.8e-183 644.8 446 74.7
Hund16503 Selenicereus undatus HOM05D005052 ORTHO05D006226 6.3e-183 644.4 453 74.6
FAN19G0738 Fragaria x ananassa HOM05D005052 ORTHO05D006226 8.2e-183 644.0 438 75.6
AUR62003338 Chenopodium quinoa HOM05D005052 ORTHO05D006226 1.1e-182 643.7 451 74.7
FvH4_1g11430 Fragaria vesca HOM05D005052 ORTHO05D006226 1.1e-182 643.7 438 75.6
A09p10150 Brassica napus HOM05D005052 ORTHO05D006226 1.8e-182 642.9 447 74.7
MBI05_g23388_MAGBIO Magnolia biondii HOM05D005052 ORTHO05D006226 1.8e-182 642.9 453 72.6
PSO675G6089 Papaver somniferum HOM05D005052 ORTHO05D006226 2.4e-182 642.5 452 74.1
FAN23G2381 Fragaria x ananassa HOM05D005052 ORTHO05D006226 3.1e-182 642.1 403 79.7
TAR381G1626 Trochodendron aralioides HOM05D005052 ORTHO05D006226 7.0e-182 641.0 427 76.3
BraA09t36659Z Brassica rapa HOM05D005052 ORTHO05D006226 1.2e-181 640.2 447 74.7
AUR62029500 Chenopodium quinoa HOM05D005052 ORTHO05D006226 1.5e-181 639.8 457 73.7
Gohir.D11G180500 Gossypium hirsutum HOM05D005052 ORTHO05D006226 4.5e-181 638.3 380 84.2
FAN26G3360 Fragaria x ananassa HOM05D005052 ORTHO05D006226 5.9e-181 637.9 403 79.2
Gohir.A11G173500 Gossypium hirsutum HOM05D005052 ORTHO05D006226 7.2e-179 630.9 368 85.3
Aqoxy4G02022 Aquilegia oxysepala HOM05D005052 ORTHO05D006226 1.2e-178 630.2 416 77.6
Zm00001eb103800 Zea mays HOM05D005052 ORTHO05D006226 6.1e-178 627.9 445 72.4
ATR0712G043 Amborella trichopoda HOM05D005052 ORTHO05D006226 8.0e-178 627.5 451 71.6
Os09g0539100 Oryza sativa ssp. japonica HOM05D005052 ORTHO05D006226 1.4e-177 626.7 386 80.3
HPP92_025914 Vanilla planifolia HOM05D005052 ORTHO05D006226 1.8e-174 616.3 450 70.2
HPP92_025909 Vanilla planifolia HOM05D005052 ORTHO05D006226 1.2e-173 613.6 450 70.2
Pp3c13_24150 Physcomitrium patens HOM05D005052 ORTHO05D006226 1.4e-169 600.1 410 72.9
CSS0012363 Camellia sinensis var. sinensis HOM05D005052 ORTHO05D006226 1.3e-167 593.6 328 87.8
Ciclev10025711m.g Citrus clementina HOM05D005052 ORTHO05D006226 2.8e-167 592.4 457 69.1
AagrBONN_evm.TU.Sc2ySwM_340.387 Anthoceros agrestis HOM05D005052 ORTHO05D006226 1.1e-166 590.5 387 74.9
Mapoly0031s0094 Marchantia polymorpha HOM05D005052 ORTHO05D006226 2.4e-166 589.3 394 72.8
SMO228G0049 Selaginella moellendorffii HOM05D005052 ORTHO05D006226 2.7e-165 585.9 364 76.6
Actinidia28717 Actinidia chinensis HOM05D005052 ORTHO05D006226 5.4e-158 561.6 450 69.1
Lsat_1_v5_gn_3_125660 Lactuca sativa HOM05D005052 ORTHO05D006226 1.2e-154 550.4 426 70.4
Zm00001eb331970 Zea mays HOM05D005052 ORTHO05D006226 2.1e-154 549.7 415 69.4
DCAR_004732 Daucus carota HOM05D005052 ORTHO05D006226 3.0e-153 545.8 380 71.3
CBR_g10969 Chara braunii HOM05D005052 ORTHO05D006226 1.3e-151 540.4 387 69.0
Actinidia17421 Actinidia chinensis HOM05D005052 ORTHO05D006226 3.5e-149 532.3 287 89.9
Cre08.g368950 Chlamydomonas reinhardtii HOM05D005052 ORTHO05D006226 2.0e-144 516.5 394 66.5
EL10Ac6g15523 Beta vulgaris HOM05D005052 ORTHO05D006226 3.7e-143 512.3 461 59.9
CDE04G1415 Ceratophyllum demersum HOM05D005052 ORTHO05D006226 5.0e-140 501.9 287 83.3
MCO01G625 Micromonas commoda HOM05D005052 ORTHO05D006226 8.9e-137 491.1 372 63.7
Hma1.2p1_0315F.1_g122330 Hydrangea macrophylla HOM05D005052 ORTHO05D006226 5.4e-134 481.9 375 68.3
Manes.02G107200 Manihot esculenta HOM05D005052 ORTHO05D006226 5.2e-129 465.3 336 73.2
Ah.03g149130 Amaranthus hybridus HOM05D005052 ORTHO05D006226 1.9e-126 456.8 280 82.1
PRCOL_00000314 Prasinoderma coloniale HOM05D005052 ORTHO05D006226 9.2e-126 454.5 377 59.4
SEGI_14262 Sequoiadendron giganteum HOM05D005052 ORTHO05D006226 2.4e-118 429.9 282 75.5
Dinv33661 Davidia involucrata HOM05D005052 ORTHO05D006226 3.2e-118 429.5 233 90.1
Hma1.2p1_2620F.1_g325580 Hydrangea macrophylla HOM05D005052 ORTHO05D006226 6.0e-109 398.7 451 54.1
CDE02G2775 Ceratophyllum demersum HOM05D005052 ORTHO05D006226 1.0e-108 397.9 303 68.3
SEGI_08539 Sequoiadendron giganteum HOM05D005052 ORTHO05D006226 2.0e-96 357.1 224 75.0
CDE02G1558 Ceratophyllum demersum HOM05D005052 ORTHO05D006226 1.9e-86 323.9 256 65.6
SGA_v2.0_scaffold273G46395 Striga asiatica HOM05D005052 ORTHO05D006226 2.5e-83 313.5 258 65.9
Lsat_1_v5_gn_0_46241 Lactuca sativa HOM05D005052 ORTHO05D006226 1.6e-77 294.3 299 47.8
TPR.G6592 Trifolium pratense HOM05D005052 ORTHO05D006226 1.1e-75 288.1 273 59.0
unitig_699.g19702 Utricularia gibba HOM05D005052 ORTHO05D006226 2.2e-74 283.9 161 87.0
RcHm_v2.0_Chr2g0099011 Rosa chinensis HOM05D005052 ORTHO05D006226 3.2e-70 270.0 246 58.1
Haze_27270 Corylus avellana HOM05D005052 ORTHO05D006226 5.7e-67 259.2 355 43.1
unitig_699.g19703 Utricularia gibba HOM05D005052 ORTHO05D006226 1.6e-56 224.6 236 59.3
Cfa024476 Carpinus fangiana HOM05D003566 ORTHO05D126353 7.2e-54 215.7 336 41.7
Dinv33662 Davidia involucrata HOM05D005052 ORTHO05D006226 7.5e-51 205.7 207 58.0
Rhsim07G0143100 Rhododendron simsii HOM05D005052 ORTHO05D006226 2.7e-45 187.2 184 58.7
SEGI_40904 Sequoiadendron giganteum HOM05D005052 ORTHO05D006226 4.7e-45 186.4 113 77.0
Ah.03g149140 Amaranthus hybridus HOM05D000441 ORTHO05D000340 1.5e-30 138.3 77 84.4
SEGI_17140 Sequoiadendron giganteum HOM05D005052 ORTHO05D006226 1.8e-28 131.3 83 71.1
SEGI_34573 Sequoiadendron giganteum HOM05D005052 ORTHO05D006226 1.8e-28 131.3 83 71.1
MD02G1126200 Malus domestica HOM05D005052 ORTHO05D006226 1.3e-23 115.2 129 52.7
MD14G1099300 Malus domestica HOM05D005052 ORTHO05D006226 1.3e-23 115.2 129 52.7
DCAR_004721 Daucus carota HOM05D005052 ORTHO05D006226 9.5e-22 109.0 113 52.2
Rhsim07G0135500 Rhododendron simsii HOM05D005052 ORTHO05D006226 2.8e-21 107.5 71 70.4
SEGI_22853 Sequoiadendron giganteum HOM05D005052 ORTHO05D006226 5.8e-19 99.8 69 65.2
CDE04G1456 Ceratophyllum demersum HOM05D005052 ORTHO05D006226 2.7e-16 90.9 76 64.5
Rhsim07G0135600 Rhododendron simsii HOM05D005052 ORTHO05D339393 9.2e-09 65.9 37 78.4
CSS0040013 Camellia sinensis var. sinensis HOM05D005052 ORTHO05D006226 5.6e-06 56.6 112 36.6


User provided reference genes

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