Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow3G4242 Salvia bowleyana HOM05D008047 ORTHO05D009832 8.4e-60 233.4 112 100.0
Migut.F02078 Erythranthe guttata HOM05D008047 ORTHO05D009832 2.2e-23 112.5 113 43.4
MSTRG.9235 Avicennia marina HOM05D008047 ORTHO05D009832 2.8e-23 112.1 101 44.6
SGA_v2.0_scaffold122G33226 Striga asiatica HOM05D008047 ORTHO05D009832 1.6e-21 106.3 99 50.5
SGA_v2.0_scaffold286G47135 Striga asiatica HOM05D008047 ORTHO05D009832 2.0e-21 105.9 82 51.2
Oeu034726.1 Olea europaea HOM05D008047 ORTHO05D009832 2.6e-21 105.5 96 44.8
Cc05_g15210 Coffea canephora HOM05D008047 ORTHO05D009832 7.2e-19 97.4 102 42.2
Sc07g0003900 Simmondsia chinensis HOM05D008047 ORTHO05D009832 4.7e-18 94.7 107 34.6
TAR622G0472 Trochodendron aralioides HOM05D008047 ORTHO05D009832 6.1e-18 94.4 100 41.0
QL02p068705 Quercus lobata HOM05D008047 ORTHO05D009832 3.0e-17 92.0 81 43.2
Atru.chr6.2719 Acer truncatum HOM05D008047 ORTHO05D009832 6.7e-17 90.9 92 41.3
Eucgr.I01575 Eucalyptus grandis HOM05D008047 ORTHO05D009832 6.7e-17 90.9 97 38.1
GSVIVG01032956001 Vitis vinifera HOM05D008047 ORTHO05D009832 8.8e-17 90.5 107 35.5
Phvul.004G068800 Phaseolus vulgaris HOM05D008047 ORTHO05D009832 1.5e-16 89.7 99 38.4
Prupe.3G314800 Prunus persica HOM05D008047 ORTHO05D009832 1.5e-16 89.7 83 42.2
RcHm_v2.0_Chr2g0176671 Rosa chinensis HOM05D008047 ORTHO05D009832 1.5e-16 89.7 81 44.4
MD17G1004800 Malus domestica HOM05D008047 ORTHO05D009832 2.0e-16 89.4 82 43.9
Rhsim08G0038000 Rhododendron simsii HOM05D008047 ORTHO05D009832 2.0e-16 89.4 102 37.3
Glyma.16G148900 Glycine max HOM05D008047 ORTHO05D009832 2.6e-16 89.0 99 39.4
Lj7P618T36 Lonicera japonica HOM05D008047 ORTHO05D009832 2.6e-16 89.0 90 42.2
FvH4_6g54420 Fragaria vesca HOM05D008047 ORTHO05D009832 3.3e-16 88.6 110 36.4
FAN09G0295 Fragaria x ananassa HOM05D008047 ORTHO05D009832 4.4e-16 88.2 110 36.4
Gohir.A05G333400 Gossypium hirsutum HOM05D000489 ORTHO05D009832 7.5e-16 87.4 106 37.7
DCAR_014455 Daucus carota HOM05D008047 ORTHO05D009832 9.7e-16 87.0 97 35.1
Thecc.04G050500 Theobroma cacao HOM05D008047 ORTHO05D009832 9.7e-16 87.0 120 37.5
TWI32G1069 Tripterygium wilfordii HOM05D008047 ORTHO05D009832 9.7e-16 87.0 97 34.0
ClCG05G012510 Citrullus lanatus HOM05D008047 ORTHO05D009832 1.3e-15 86.7 103 38.8
Gohir.D04G073100 Gossypium hirsutum HOM05D008047 ORTHO05D009832 1.3e-15 86.7 109 36.7
Gorai.012G082400 Gossypium raimondii HOM05D008047 ORTHO05D009832 1.3e-15 86.7 109 36.7
CsaV3_3G020010 Cucumis sativus L. HOM05D000489 ORTHO05D009832 1.7e-15 86.3 103 36.9
Potri.013G131500 Populus trichocarpa HOM05D008047 ORTHO05D009832 1.7e-15 86.3 100 42.0
Ah.02g128750 Amaranthus hybridus HOM05D000154 ORTHO05D000092 2.2e-15 85.9 84 39.3
Cpa.g.sc70.44 Carica papaya HOM05D008047 ORTHO05D009832 2.2e-15 85.9 82 46.3
MELO3C014762.2 Cucumis melo HOM05D000489 ORTHO05D009832 2.2e-15 85.9 104 36.5
Psat7g255760 Pisum sativum HOM05D008047 ORTHO05D009832 2.2e-15 85.9 109 36.7
CARHR199530 Cardamine hirsuta HOM05D008047 ORTHO05D009832 2.8e-15 85.5 107 35.5
FAN02G1422 Fragaria x ananassa HOM05D008047 ORTHO05D009832 2.8e-15 85.5 109 36.7
FAN05G0159 Fragaria x ananassa HOM05D008047 ORTHO05D009832 2.8e-15 85.5 81 42.0
Nn3g16226 Nelumbo nucifera HOM05D008047 ORTHO05D009832 2.8e-15 85.5 84 41.7
ECA232G1047 Erigeron canadensis HOM05D008047 ORTHO05D009832 3.7e-15 85.1 81 43.2
FAN14G5573 Fragaria x ananassa HOM05D000154 ORTHO05D000092 3.7e-15 85.1 77 42.9
VMungo0464G1119 Vigna mungo HOM05D008047 ORTHO05D009832 3.7e-15 85.1 110 31.8
BcaNung04178 Brassica carinata HOM05D000233 ORTHO05D009832 4.8e-15 84.7 99 38.4
FAN09G4097 Fragaria x ananassa HOM05D008047 ORTHO05D009832 4.8e-15 84.7 110 35.5
Lsat_1_v5_gn_4_185720 Lactuca sativa HOM05D008047 ORTHO05D009832 4.8e-15 84.7 80 45.0
A10p24460 Brassica napus HOM05D000233 ORTHO05D009832 6.3e-15 84.3 99 37.4
BraA10t44511Z Brassica rapa HOM05D000233 ORTHO05D009832 6.3e-15 84.3 99 37.4
HanXRQChr09g0255591 Helianthus annuus HOM05D008047 ORTHO05D009832 6.3e-15 84.3 80 45.0
BcaC04g24244 Brassica carinata HOM05D000233 ORTHO05D009832 8.2e-15 84.0 81 40.7
Lj5g0012387 Lotus japonicus HOM05D008047 ORTHO05D009832 8.2e-15 84.0 81 39.5
Nitab4.5_0003120g0010 Nicotiana tabacum HOM05D008047 ORTHO05D009832 8.2e-15 84.0 109 36.7
Sp6g30100 Schrenkiella parvula HOM05D008047 ORTHO05D009832 8.2e-15 84.0 109 35.8
TPR.G7287 Trifolium pratense HOM05D008047 ORTHO05D009832 8.2e-15 84.0 103 36.9
AL6G24550 Arabidopsis lyrata HOM05D008047 ORTHO05D009832 1.4e-14 83.2 99 36.4
Hund04128 Selenicereus undatus HOM05D008047 ORTHO05D009832 1.4e-14 83.2 78 41.0
EL10Ac6g13897 Beta vulgaris HOM05D001858 ORTHO05D009832 1.8e-14 82.8 103 35.9
A02p02240 Brassica napus HOM05D000233 ORTHO05D009832 2.4e-14 82.4 81 39.5
Ciclev10018048m.g Citrus clementina HOM05D008047 ORTHO05D009832 2.4e-14 82.4 108 35.2
Thhalv10014913m.g Eutrema salsugineum HOM05D008047 ORTHO05D009832 2.4e-14 82.4 99 37.4
Medtr4g011070 Medicago truncatula HOM05D008047 ORTHO05D009832 2.4e-14 82.4 107 33.6
Haze_14960 Corylus avellana HOM05D008047 ORTHO05D009832 3.1e-14 82.0 80 40.0
Manes.04G094800 Manihot esculenta HOM05D008047 ORTHO05D009832 3.1e-14 82.0 81 40.7
C02p06480 Brassica napus HOM05D000233 ORTHO05D009832 4.1e-14 81.6 81 39.5
BolC2t06594H Brassica oleracea HOM05D000233 ORTHO05D009832 4.1e-14 81.6 81 39.5
THA.LOC104822430 Tarenaya hassleriana HOM05D008047 ORTHO05D009832 4.1e-14 81.6 82 39.0
Aa31LG11G15460 Aethionema arabicum HOM05D008047 ORTHO05D009832 5.3e-14 81.3 106 33.0
Sabra13G0111000 Salix brachista HOM05D008047 ORTHO05D009832 7.0e-14 80.9 93 37.6
Cfa007157 Carpinus fangiana HOM05D008047 ORTHO05D009832 9.1e-14 80.5 80 38.8
MBI04_g15075_MAGBIO Magnolia biondii HOM05D000489 ORTHO05D009832 9.1e-14 80.5 107 37.4
MBI04_g47855_MAGBIO Magnolia biondii HOM05D000489 ORTHO05D009832 9.1e-14 80.5 107 37.4
AT5G13900 Arabidopsis thaliana HOM05D008047 ORTHO05D009832 2.0e-13 79.3 81 38.3
PGR142G2733 Punica granatum HOM05D008047 ORTHO05D009832 4.5e-13 78.2 100 36.0
Solyc01g103060.4 Solanum lycopersicum HOM05D008047 ORTHO05D009832 1.0e-12 77.0 110 32.7
Nn3g16225 Nelumbo nucifera HOM05D008047 ORTHO05D009832 3.8e-12 75.1 101 33.7
Nitab4.5_0008306g0030 Nicotiana tabacum HOM05D008047 ORTHO05D009832 3.8e-12 75.1 109 33.9
AUR62017473 Chenopodium quinoa HOM05D001858 ORTHO05D009832 6.5e-12 74.3 84 35.7
PGSC0003DMG400020710 Solanum tuberosum HOM05D008047 ORTHO05D009832 6.5e-12 74.3 85 35.3
CAN.G855.49 Capsicum annuum HOM05D008047 ORTHO05D009832 8.5e-12 73.9 85 36.5
BcaC04g19068 Brassica carinata HOM05D000233 ORTHO05D009832 1.5e-11 73.2 77 37.7
Peaxi162Scf00011g01846 Petunia axillaris HOM05D008047 ORTHO05D009832 7.2e-11 70.9 85 37.6
PGR142G1223 Punica granatum HOM05D008047 ORTHO05D009832 9.4e-11 70.5 96 35.4
Nitab4.5_0004668g0080 Nicotiana tabacum HOM05D008047 ORTHO05D009832 4.7e-10 68.2 100 36.0
AUR62042859 Chenopodium quinoa HOM05D008047 ORTHO05D009832 6.1e-10 67.8 71 36.6
Carub.0006s1209 Capsella rubella HOM05D008047 ORTHO05D009832 1.8e-09 66.2 107 31.8
AUR62007456 Chenopodium quinoa HOM05D001858 ORTHO05D001838 4.0e-09 65.1 85 34.1
Actinidia05177 Actinidia chinensis HOM05D001858 ORTHO05D001838 5.2e-09 64.7 94 33.0
EL10Ac5g12989 Beta vulgaris HOM05D001858 ORTHO05D001838 5.2e-09 64.7 113 31.9
MD04G1081000 Malus domestica HOM05D001858 ORTHO05D001838 1.2e-08 63.5 101 33.7
CSS0048801 Camellia sinensis var. sinensis HOM05D008047 ORTHO05D009832 2.0e-08 62.8 66 40.9
SEGI_28568 Sequoiadendron giganteum HOM05D001858 ORTHO05D001838 3.4e-08 62.0 88 31.8
Glyma.17G137300 Glycine max HOM05D001858 ORTHO05D001838 4.4e-08 61.6 111 29.7
SEGI_06211 Sequoiadendron giganteum HOM05D001858 ORTHO05D001838 7.5e-08 60.8 98 29.6
PGR042G3218 Punica granatum HOM05D001858 ORTHO05D001838 9.8e-08 60.5 98 31.6
AUR62007457 Chenopodium quinoa HOM05D001858 ORTHO05D001838 1.3e-07 60.1 99 31.3
DCAR_006809 Daucus carota HOM05D001858 ORTHO05D001838 1.3e-07 60.1 105 33.3
Nn1g01118 Nelumbo nucifera HOM05D001858 ORTHO05D001838 1.3e-07 60.1 91 34.1
Lalb_Chr05g0214611 Lupinus albus HOM05D001858 ORTHO05D001838 1.7e-07 59.7 98 26.5
RcHm_v2.0_Chr7g0202051 Rosa chinensis HOM05D001858 ORTHO05D001838 1.7e-07 59.7 86 32.6
Glyma.05G055100 Glycine max HOM05D001858 ORTHO05D001838 2.2e-07 59.3 102 31.4
HanXRQChr02g0049661 Helianthus annuus HOM05D001858 ORTHO05D001838 2.8e-07 58.9 81 38.3
Actinidia27437 Actinidia chinensis HOM05D001858 ORTHO05D001838 3.7e-07 58.5 88 31.8
Hma1.2p1_1868F.1_g305930 Hydrangea macrophylla HOM05D001858 ORTHO05D001838 6.3e-07 57.8 85 34.1
Rhsim07G0103400 Rhododendron simsii HOM05D001858 ORTHO05D001838 6.3e-07 57.8 69 39.1
CsaV3_3G003100 Cucumis sativus L. HOM05D001858 ORTHO05D001838 1.1e-06 57.0 108 27.8
Lalb_Chr16g0389531 Lupinus albus HOM05D001858 ORTHO05D001838 1.1e-06 57.0 109 31.2
Nn5g27957 Nelumbo nucifera HOM05D001858 ORTHO05D001838 1.1e-06 57.0 86 32.6
AUR62027276 Chenopodium quinoa HOM05D001858 ORTHO05D001838 1.4e-06 56.6 66 39.4
FvH4_5g00460 Fragaria vesca HOM05D001858 ORTHO05D001838 1.4e-06 56.6 101 30.7
PSO017G1597 Papaver somniferum HOM05D008047 ORTHO05D009832 1.4e-06 56.6 56 41.1
PSO478G1745 Papaver somniferum HOM05D008047 ORTHO05D009832 1.4e-06 56.6 56 41.1
Rhsim07G0103500 Rhododendron simsii HOM05D001858 ORTHO05D001838 1.4e-06 56.6 88 30.7
TAR629G0091 Trochodendron aralioides HOM05D001858 ORTHO05D001838 1.4e-06 56.6 75 38.7
TAR629G2117 Trochodendron aralioides HOM05D001858 ORTHO05D001838 1.4e-06 56.6 80 37.5
FAN08G1163 Fragaria x ananassa HOM05D001858 ORTHO05D001838 1.8e-06 56.2 101 30.7
FAN18G0727 Fragaria x ananassa HOM05D001858 ORTHO05D001838 1.8e-06 56.2 101 30.7
VMungo0464G0752 Vigna mungo HOM05D001858 ORTHO05D001838 1.8e-06 56.2 87 32.2
DCAR_004911 Daucus carota HOM05D001858 ORTHO05D001838 2.4e-06 55.8 92 31.5
SEGI_26014 Sequoiadendron giganteum HOM05D001858 ORTHO05D001838 2.4e-06 55.8 98 27.6
Lj2g0011219 Lotus japonicus HOM05D001858 ORTHO05D001838 4.1e-06 55.1 82 31.7
Potri.001G119000 Populus trichocarpa HOM05D001858 ORTHO05D001838 4.1e-06 55.1 93 32.3
VMungo0251G1333 Vigna mungo HOM05D001858 ORTHO05D001838 4.1e-06 55.1 84 34.5
EL10Ac5g12990 Beta vulgaris HOM05D001858 ORTHO05D001838 5.4e-06 54.7 94 34.0
ECA233G2544 Erigeron canadensis HOM05D001858 ORTHO05D001838 5.4e-06 54.7 86 32.6
Potri.003G113900 Populus trichocarpa HOM05D001858 ORTHO05D001838 5.4e-06 54.7 104 29.8
C09p63200 Brassica napus HOM05D008047 ORTHO05D009832 7.0e-06 54.3 52 40.4
Lsat_1_v5_gn_6_2261 Lactuca sativa HOM05D001858 ORTHO05D001838 7.0e-06 54.3 78 35.9
Aqoxy7G00686 Aquilegia oxysepala HOM05D001858 ORTHO05D001838 9.1e-06 53.9 100 34.0
EL10Ac5g12987 Beta vulgaris HOM05D001858 ORTHO05D001838 9.1e-06 53.9 91 31.9
MELO3C013976.2 Cucumis melo HOM05D001858 ORTHO05D001838 9.1e-06 53.9 94 29.8


User provided reference genes

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