Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow3G4162 Salvia bowleyana HOM05D001997 ORTHO05D004620 1.4e-66 256.1 129 100.0
MSTRG.17660 Avicennia marina HOM05D001997 ORTHO05D004620 2.3e-32 142.5 114 68.4
MSTRG.12412 Avicennia marina HOM05D001997 ORTHO05D004620 5.0e-32 141.4 110 66.4
Migut.N02417 Erythranthe guttata HOM05D001997 ORTHO05D004620 1.2e-30 136.7 112 61.6
Oeu015677.2 Olea europaea HOM05D001997 ORTHO05D004620 1.8e-29 132.9 106 63.2
PGSC0003DMG400026903 Solanum tuberosum HOM05D001997 ORTHO05D004620 2.6e-28 129.0 101 68.3
Nitab4.5_0002368g0100 Nicotiana tabacum HOM05D001997 ORTHO05D004620 7.5e-28 127.5 87 72.4
Nitab4.5_0010690g0010 Nicotiana tabacum HOM05D001997 ORTHO05D004620 7.5e-28 127.5 87 72.4
unitig_22.g6172 Utricularia gibba HOM05D001997 ORTHO05D004620 7.5e-28 127.5 107 61.7
SGA_v2.0_scaffold16G07570 Striga asiatica HOM05D001997 ORTHO05D004620 1.8e-26 122.9 90 72.2
Manes.04G048600 Manihot esculenta HOM05D001997 ORTHO05D004620 2.4e-26 122.5 97 66.0
Hma1.2p1_0597F.1_g186510 Hydrangea macrophylla HOM05D001997 ORTHO05D004620 4.1e-26 121.7 97 63.9
Sopen06g029850 Solanum pennellii HOM05D001997 ORTHO05D004620 4.1e-26 121.7 100 65.0
Rhsim09G0030400 Rhododendron simsii HOM05D001997 ORTHO05D004620 5.4e-26 121.3 96 62.5
Peaxi162Scf00375g00082 Petunia axillaris HOM05D001997 ORTHO05D004620 1.2e-25 120.2 86 69.8
Cc01_g08750 Coffea canephora HOM05D001997 ORTHO05D004620 1.6e-25 119.8 100 63.0
QL10p047463 Quercus lobata HOM05D001997 ORTHO05D004620 3.5e-25 118.6 97 59.8
Atru.chr3.1570 Acer truncatum HOM05D001997 ORTHO05D004620 5.9e-25 117.9 96 59.4
Atru.chr3.1589 Acer truncatum HOM05D001997 ORTHO05D004620 5.9e-25 117.9 96 59.4
Potri.007G124700 Populus trichocarpa HOM05D001997 ORTHO05D004620 5.9e-25 117.9 112 56.2
Ciclev10019328m.g Citrus clementina HOM05D001997 ORTHO05D004620 1.0e-24 117.1 92 64.1
Dinv22695 Davidia involucrata HOM05D001997 ORTHO05D004620 2.3e-24 115.9 89 68.5
Sabra17G0022600 Salix brachista HOM05D001997 ORTHO05D004620 2.3e-24 115.9 107 56.1
Cpa.g.sc81.168 Carica papaya HOM05D001997 ORTHO05D004620 2.9e-24 115.5 118 53.4
Cfa015772 Carpinus fangiana HOM05D001997 ORTHO05D004620 2.9e-24 115.5 104 57.7
Potri.017G035700 Populus trichocarpa HOM05D001997 ORTHO05D004620 5.0e-24 114.8 107 55.1
Haze_00722 Corylus avellana HOM05D001997 ORTHO05D004620 6.6e-24 114.4 104 56.7
CSS0007184 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D004620 8.6e-24 114.0 96 62.5
Actinidia35961 Actinidia chinensis HOM05D001997 ORTHO05D004620 1.9e-23 112.8 89 67.4
CANSAT21G1219 Cannabis sativa HOM05D001997 ORTHO05D004620 2.5e-23 112.5 111 55.0
HanXRQChr02g0057961 Helianthus annuus HOM05D001997 ORTHO05D004620 3.3e-23 112.1 118 50.0
CiPaw.02G056300 Carya illinoinensis HOM05D001997 ORTHO05D004620 4.3e-23 111.7 97 57.7
THA.LOC104802304 Tarenaya hassleriana HOM05D001997 ORTHO05D004620 4.3e-23 111.7 110 54.5
Nn5g27952 Nelumbo nucifera HOM05D001997 ORTHO05D004620 5.6e-23 111.3 96 55.2
Sc19g0002180 Simmondsia chinensis HOM05D001997 ORTHO05D004620 5.6e-23 111.3 97 55.7
TWI36G0125 Tripterygium wilfordii HOM05D001997 ORTHO05D004620 7.3e-23 110.9 89 61.8
MD07G1139400 Malus domestica HOM05D001997 ORTHO05D004620 9.5e-23 110.5 97 58.8
Prupe.2G167200 Prunus persica HOM05D001997 ORTHO05D004620 3.6e-22 108.6 97 55.7
TAR622G0498 Trochodendron aralioides HOM05D001997 ORTHO05D004620 3.6e-22 108.6 96 58.3
PGR044G1365 Punica granatum HOM05D001997 ORTHO05D004620 4.7e-22 108.2 97 53.6
Gohir.D08G083300 Gossypium hirsutum HOM05D001997 ORTHO05D004620 6.1e-22 107.8 89 60.7
Gorai.004G087500 Gossypium raimondii HOM05D001997 ORTHO05D004620 6.1e-22 107.8 89 60.7
Gorai.006G186500 Gossypium raimondii HOM05D001997 ORTHO05D004620 6.1e-22 107.8 96 56.2
Lj6C60T7 Lonicera japonica HOM05D001997 ORTHO05D004620 6.1e-22 107.8 92 62.0
FvH4_7g14000 Fragaria vesca HOM05D001997 ORTHO05D004620 8.0e-22 107.5 97 55.7
RcHm_v2.0_Chr1g0354651 Rosa chinensis HOM05D001997 ORTHO05D004620 8.0e-22 107.5 97 54.6
TAR636G0474 Trochodendron aralioides HOM05D001997 ORTHO05D004620 8.0e-22 107.5 96 57.3
FAN06G4213 Fragaria x ananassa HOM05D001997 ORTHO05D004620 1.4e-21 106.7 97 55.7
Gohir.A08G074100 Gossypium hirsutum HOM05D001997 ORTHO05D004620 1.8e-21 106.3 89 59.6
FAN06G3325 Fragaria x ananassa HOM05D001997 ORTHO05D004620 2.3e-21 105.9 97 54.6
Lsat_1_v5_gn_6_55020 Lactuca sativa HOM05D001997 ORTHO05D004620 2.3e-21 105.9 91 58.2
ECA233G5997 Erigeron canadensis HOM05D001997 ORTHO05D004620 3.0e-21 105.5 90 57.8
FAN01G1889 Fragaria x ananassa HOM05D001997 ORTHO05D004620 3.0e-21 105.5 97 54.6
FAN10G4317 Fragaria x ananassa HOM05D001997 ORTHO05D004620 3.0e-21 105.5 97 54.6
Duzib093G0427 Durio zibethinus HOM05D001997 ORTHO05D004620 4.0e-21 105.1 80 63.8
AUR62037461 Chenopodium quinoa HOM05D001997 ORTHO05D004620 6.8e-21 104.4 96 54.2
Thhalv10001801m.g Eutrema salsugineum HOM05D001997 ORTHO05D004620 6.8e-21 104.4 106 52.8
Sp4g25380 Schrenkiella parvula HOM05D001997 ORTHO05D004620 6.8e-21 104.4 105 54.3
SGA_v2.0_scaffold4G02500 Striga asiatica HOM05D001997 ORTHO05D004620 6.8e-21 104.4 74 73.0
Dinv05995 Davidia involucrata HOM05D001997 ORTHO05D004620 8.9e-21 104.0 88 55.7
CARHR138340 Cardamine hirsuta HOM05D001997 ORTHO05D004620 1.2e-20 103.6 106 50.9
FAN03G0113 Fragaria x ananassa HOM05D001997 ORTHO05D004620 1.2e-20 103.6 97 53.6
FAN10G2611 Fragaria x ananassa HOM05D001997 ORTHO05D004620 1.5e-20 103.2 97 53.6
FAN10G3464 Fragaria x ananassa HOM05D001997 ORTHO05D004620 1.5e-20 103.2 97 53.6
Glyma.11G094600 Glycine max HOM05D001997 ORTHO05D004620 1.5e-20 103.2 97 53.6
HanXRQChr07g0186151 Helianthus annuus HOM05D001997 ORTHO05D004620 1.5e-20 103.2 91 59.3
AT2G43250 Arabidopsis thaliana HOM05D001997 ORTHO05D004620 2.0e-20 102.8 100 57.0
AUR62035000 Chenopodium quinoa HOM05D001997 ORTHO05D004620 2.0e-20 102.8 96 53.1
Phvul.011G023500 Phaseolus vulgaris HOM05D001997 ORTHO05D004620 2.6e-20 102.4 90 56.7
VMungo1127G1251 Vigna mungo HOM05D001997 ORTHO05D004620 2.6e-20 102.4 103 52.4
Ah.05g167000 Amaranthus hybridus HOM05D001997 ORTHO05D004620 3.4e-20 102.1 94 54.3
RcHm_v2.0_Chr1g0373181 Rosa chinensis HOM05D001997 ORTHO05D004620 3.4e-20 102.1 88 62.5
AL4G41910 Arabidopsis lyrata HOM05D001997 ORTHO05D004620 4.4e-20 101.7 100 54.0
Lj4g0020139 Lotus japonicus HOM05D001997 ORTHO05D004620 4.4e-20 101.7 85 58.8
Lj3g0010188 Lotus japonicus HOM05D001997 ORTHO05D004620 5.7e-20 101.3 104 52.9
Thhalv10001772m.g Eutrema salsugineum HOM05D001997 ORTHO05D004620 9.8e-20 100.5 112 47.3
MBI11_g35030_MAGBIO Magnolia biondii HOM05D001997 ORTHO05D004620 9.8e-20 100.5 83 61.4
Glyma.03G127700 Glycine max HOM05D001997 ORTHO05D004620 1.7e-19 99.8 80 61.2
HPP92_007608 Vanilla planifolia HOM05D001997 ORTHO05D004620 2.9e-19 99.0 95 52.6
FAN03G0465 Fragaria x ananassa HOM05D001997 ORTHO05D004620 4.9e-19 98.2 88 59.1
PSO675G0019 Papaver somniferum HOM05D001997 ORTHO05D004620 4.9e-19 98.2 95 47.4
Glyma.12G021000 Glycine max HOM05D001997 ORTHO05D004620 8.3e-19 97.4 89 56.2
PSO017G4366 Papaver somniferum HOM05D001997 ORTHO05D004620 1.1e-18 97.1 87 51.7
FAN01G2316 Fragaria x ananassa HOM05D001997 ORTHO05D004620 1.4e-18 96.7 88 58.0
A05p03690 Brassica napus HOM05D001997 ORTHO05D004620 1.8e-18 96.3 86 57.0
BraA05t19355Z Brassica rapa HOM05D001997 ORTHO05D004620 1.8e-18 96.3 86 57.0
FAN06G2538 Fragaria x ananassa HOM05D001997 ORTHO05D004620 1.8e-18 96.3 88 58.0
C04p04300 Brassica napus HOM05D001997 ORTHO05D004620 2.4e-18 95.9 86 57.0
BolC4t22066H Brassica oleracea HOM05D001997 ORTHO05D004620 4.1e-18 95.1 86 57.0
CDE08G0116 Ceratophyllum demersum HOM05D001997 ORTHO05D004620 4.1e-18 95.1 95 49.5
Aqoxy7G03960 Aquilegia oxysepala HOM05D001997 ORTHO05D004620 5.4e-18 94.7 121 42.1
FvH4_7g26521 Fragaria vesca HOM05D001997 ORTHO05D004620 7.0e-18 94.4 88 56.8
FAN10G3679 Fragaria x ananassa HOM05D001997 ORTHO05D004620 7.0e-18 94.4 88 56.8
Zm00001eb425530 Zea mays HOM05D001997 ORTHO05D004620 7.0e-18 94.4 99 52.5
Ca_26058_v3 Cicer arietinum L. HOM05D001997 ORTHO05D004620 1.2e-17 93.6 115 45.2
SEGI_28245 Sequoiadendron giganteum HOM05D001997 ORTHO05D004620 1.2e-17 93.6 87 49.4
arahy.Tifrunner.gnm1.ann1.JTZ133 Arachis hypogaea HOM05D001997 ORTHO05D004620 1.6e-17 93.2 91 53.8
BraA04t18717Z Brassica rapa HOM05D001997 ORTHO05D004620 1.6e-17 93.2 93 51.6
MD01G1056400 Malus domestica HOM05D001997 ORTHO05D004620 2.0e-17 92.8 70 62.9
C04p70220 Brassica napus HOM05D001997 ORTHO05D004620 3.5e-17 92.0 90 51.1
BolC4t28526H Brassica oleracea HOM05D001997 ORTHO05D004620 3.5e-17 92.0 90 51.1
Carub.0004s2573 Capsella rubella HOM05D001997 ORTHO05D004620 3.5e-17 92.0 90 54.4
BcaC02g07197 Brassica carinata HOM05D001997 ORTHO05D004620 4.6e-17 91.7 90 50.0
TPR.G13749 Trifolium pratense HOM05D001997 ORTHO05D004620 4.6e-17 91.7 86 51.2
Oeu048804.2 Olea europaea HOM05D001997 ORTHO05D004620 5.9e-17 91.3 112 45.5
Ca_30128_v3 Cicer arietinum L. HOM05D001997 ORTHO05D004620 7.8e-17 90.9 112 45.5
A04p32530 Brassica napus HOM05D001997 ORTHO05D004620 1.0e-16 90.5 93 49.5
Cfa015264 Carpinus fangiana HOM05D001997 ORTHO05D004620 1.0e-16 90.5 67 65.7
BcaNung06617 Brassica carinata HOM05D001997 ORTHO05D004620 1.3e-16 90.1 92 50.0
Os04g0490700 Oryza sativa ssp. japonica HOM05D001997 ORTHO05D004620 1.3e-16 90.1 110 44.5
Medtr4g076640 Medicago truncatula HOM05D001997 ORTHO05D004620 1.7e-16 89.7 87 50.6
Medtr4g076620 Medicago truncatula HOM05D001997 ORTHO05D004620 2.3e-16 89.4 84 52.4
Haze_01373 Corylus avellana HOM05D001997 ORTHO05D004620 3.9e-16 88.6 84 53.6
Psat7g172720 Pisum sativum HOM05D001997 ORTHO05D004620 3.9e-16 88.6 84 50.0
TPR.G13756 Trifolium pratense HOM05D001997 ORTHO05D004620 1.1e-15 87.0 84 51.2
A06p18770 Brassica napus HOM05D001997 ORTHO05D004620 1.5e-15 86.7 86 54.7
C08p23950 Brassica napus HOM05D001997 ORTHO05D004620 3.3e-15 85.5 86 52.3
BolC8t50019H Brassica oleracea HOM05D001997 ORTHO05D004620 3.3e-15 85.5 86 52.3
BraA06t24958Z Brassica rapa HOM05D001997 ORTHO05D004620 3.3e-15 85.5 86 54.7
ATR0743G280 Amborella trichopoda HOM05D001997 ORTHO05D004620 5.6e-15 84.7 113 44.2
arahy.Tifrunner.gnm1.ann1.7X5TTD Arachis hypogaea HOM05D001997 ORTHO05D004620 4.7e-14 81.6 85 54.1
BcaC07g39373 Brassica carinata HOM05D001997 ORTHO05D004620 1.8e-13 79.7 66 60.6
BcaC07g39374 Brassica carinata HOM05D001997 ORTHO05D004620 1.8e-13 79.7 66 60.6
BcaB06g29293 Brassica carinata HOM05D001997 ORTHO05D004620 1.7e-11 73.2 65 56.9
C03p28740 Brassica napus HOM05D001997 ORTHO05D004620 4.1e-10 68.6 54 63.0
AagrBONN_evm.TU.Sc2ySwM_228.3298 Anthoceros agrestis HOM05D001997 ORTHO05D004620 1.2e-09 67.0 85 44.7
GSVIVG01013581001 Vitis vinifera HOM05D001997 ORTHO05D004620 5.0e-08 61.6 53 54.7
Hund00190 Selenicereus undatus HOM05D001997 ORTHO05D004620 6.6e-08 61.2 88 38.6
Mapoly0021s0032 Marchantia polymorpha HOM05D001997 ORTHO05D004620 4.3e-07 58.5 68 44.1


User provided reference genes

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