Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow3G4161 Salvia bowleyana HOM05D004847 ORTHO05D005856 1.4e-196 689.5 364 100.0
MSTRG.27999 Avicennia marina HOM05D004847 ORTHO05D005856 8.9e-127 457.6 319 75.9
Cc11_g03560 Coffea canephora HOM05D004847 ORTHO05D005856 1.6e-123 446.8 374 66.8
Migut.N02003 Erythranthe guttata HOM05D004847 ORTHO05D005856 1.6e-115 420.2 381 66.1
COL.COLO4_13475 Corchorus olitorius HOM05D004847 ORTHO05D005856 1.6e-112 410.2 373 64.6
QL03p006978 Quercus lobata HOM05D004847 ORTHO05D005856 2.8e-112 409.5 362 65.7
Thecc.05G303800 Theobroma cacao HOM05D004847 ORTHO05D005856 2.0e-110 403.3 370 64.3
Oeu017487.1 Olea europaea HOM05D004847 ORTHO05D005856 9.9e-110 401.0 332 69.9
Gorai.004G241800 Gossypium raimondii HOM05D004847 ORTHO05D005856 2.9e-109 399.4 366 64.2
Migut.O00711 Erythranthe guttata HOM05D004847 ORTHO05D005856 2.4e-108 396.4 386 64.0
Migut.B01038 Erythranthe guttata HOM05D004847 ORTHO05D005856 3.2e-108 396.0 426 58.0
CSS0010861 Camellia sinensis var. sinensis HOM05D004847 ORTHO05D005856 2.1e-107 393.3 347 64.8
Gohir.A11G264800 Gossypium hirsutum HOM05D004847 ORTHO05D005856 2.7e-107 392.9 389 59.6
Peaxi162Scf00037g00632 Petunia axillaris HOM05D004847 ORTHO05D005856 2.7e-107 392.9 422 56.9
Gohir.D11G275000 Gossypium hirsutum HOM05D004847 ORTHO05D005856 6.0e-107 391.7 389 59.6
Gorai.007G296800 Gossypium raimondii HOM05D004847 ORTHO05D005856 6.0e-107 391.7 389 59.6
Nitab4.5_0000137g0030 Nicotiana tabacum HOM05D004847 ORTHO05D005856 7.8e-107 391.3 416 58.7
Gohir.A08G210800 Gossypium hirsutum HOM05D004847 ORTHO05D005856 1.3e-106 390.6 366 63.7
TAR362G0189 Trochodendron aralioides HOM05D004847 ORTHO05D005856 8.7e-106 387.9 365 61.6
Dinv23942 Davidia involucrata HOM05D004847 ORTHO05D005856 1.5e-105 387.1 374 62.6
CAN.G1034.25 Capsicum annuum HOM05D004847 ORTHO05D005856 3.3e-105 386.0 475 52.2
Duzib106G0633 Durio zibethinus HOM05D004847 ORTHO05D005856 1.6e-104 383.6 394 58.4
Solyc01g099270.2 Solanum lycopersicum HOM05D004847 ORTHO05D005856 2.1e-104 383.3 295 70.2
Hma1.2p1_0928F.1_g237810 Hydrangea macrophylla HOM05D004847 ORTHO05D005856 3.6e-104 382.5 368 60.3
Potri.013G022600 Populus trichocarpa HOM05D004847 ORTHO05D005856 6.2e-104 381.7 379 60.4
Nitab4.5_0003156g0010 Nicotiana tabacum HOM05D004847 ORTHO05D005856 8.1e-104 381.3 420 57.4
Sopen01g042820 Solanum pennellii HOM05D004847 ORTHO05D005856 4.0e-103 379.0 295 69.5
Duzib128G0091 Durio zibethinus HOM05D004847 ORTHO05D005856 9.0e-103 377.9 355 61.7
TWI56G1294 Tripterygium wilfordii HOM05D004847 ORTHO05D005856 9.0e-103 377.9 370 61.1
Actinidia24643 Actinidia chinensis HOM05D004847 ORTHO05D005856 1.2e-102 377.5 366 59.3
Potri.005G033200 Populus trichocarpa HOM05D004847 ORTHO05D005856 3.4e-102 375.9 368 61.7
Prupe.6G326100 Prunus persica HOM05D004847 ORTHO05D005856 3.4e-102 375.9 364 62.4
PGSC0003DMG401024742 Solanum tuberosum HOM05D004847 ORTHO05D005856 5.8e-102 375.2 469 51.8
DCAR_003332 Daucus carota HOM05D004847 ORTHO05D005856 1.7e-101 373.6 366 59.8
TAR633G0229 Trochodendron aralioides HOM05D004847 ORTHO05D005856 2.9e-101 372.9 356 60.7
GSVIVG01000048001 Vitis vinifera HOM05D004847 ORTHO05D005856 1.4e-100 370.5 361 61.2
Sabra05G0035400 Salix brachista HOM05D004847 ORTHO05D005856 9.3e-100 367.9 369 59.6
Lj5A533T17 Lonicera japonica HOM05D004847 ORTHO05D005856 3.5e-99 365.9 373 57.6
Atru.chr2.410 Acer truncatum HOM05D004847 ORTHO05D005856 7.9e-99 364.8 389 59.4
vmacro19624 Vaccinium macrocarpon HOM05D004847 ORTHO05D005856 7.9e-99 364.8 370 60.3
Manes.09G166900 Manihot esculenta HOM05D004847 ORTHO05D005856 1.3e-98 364.0 380 58.4
Eucgr.L01544 Eucalyptus grandis HOM05D004847 ORTHO05D005856 1.8e-98 363.6 372 58.6
MD12G1219500 Malus domestica HOM05D004847 ORTHO05D005856 1.8e-98 363.6 367 59.1
CiPaw.08G164900 Carya illinoinensis HOM05D004847 ORTHO05D005856 3.0e-98 362.8 382 58.1
RcHm_v2.0_Chr3g0454731 Rosa chinensis HOM05D004847 ORTHO05D005856 6.7e-98 361.7 387 59.4
FAN05G5722 Fragaria x ananassa HOM05D004847 ORTHO05D005856 9.6e-97 357.8 386 59.3
PSO832G1768 Papaver somniferum HOM05D004847 ORTHO05D005856 9.6e-97 357.8 369 59.1
Aqoxy5G00505 Aquilegia oxysepala HOM05D004847 ORTHO05D005856 1.3e-96 357.5 387 55.0
FAN05G5436 Fragaria x ananassa HOM05D004847 ORTHO05D005856 2.8e-96 356.3 386 59.1
Ciclev10003680m.g Citrus clementina HOM05D004847 ORTHO05D001311 3.7e-96 355.9 399 57.1
Phvul.007G179800 Phaseolus vulgaris HOM05D004847 ORTHO05D005856 3.7e-96 355.9 394 57.1
Sc16g0008460 Simmondsia chinensis HOM05D004847 ORTHO05D005856 3.7e-96 355.9 393 56.2
MD04G1205400 Malus domestica HOM05D004847 ORTHO05D005856 4.8e-96 355.5 377 57.6
Nn4g26247 Nelumbo nucifera HOM05D004847 ORTHO05D005856 3.1e-95 352.8 364 59.3
Gohir.D08G227600 Gossypium hirsutum HOM05D004847 ORTHO05D005856 9.0e-95 351.3 295 66.4
CiPaw.07G017600 Carya illinoinensis HOM05D004847 ORTHO05D005856 5.8e-94 348.6 326 61.3
Sabra13G0024700 Salix brachista HOM05D004847 ORTHO05D005856 5.8e-94 348.6 338 62.4
FvH4_6g05820 Fragaria vesca HOM05D004847 ORTHO05D005856 7.6e-94 348.2 386 57.3
FAN14G3900 Fragaria x ananassa HOM05D004847 ORTHO05D005856 7.6e-94 348.2 386 57.3
Lsat_1_v5_gn_9_123520 Lactuca sativa HOM05D004847 ORTHO05D005856 7.6e-94 348.2 343 58.3
Ca_10113_v3 Cicer arietinum L. HOM05D004847 ORTHO05D005856 1.3e-93 347.4 380 57.4
PSO210G5284 Papaver somniferum HOM05D004847 ORTHO05D005856 2.2e-93 346.7 369 58.0
arahy.Tifrunner.gnm1.ann1.91A0PW Arachis hypogaea HOM05D004847 ORTHO05D005856 1.4e-92 344.0 402 54.2
Haze_04198 Corylus avellana HOM05D004847 ORTHO05D005856 1.4e-92 344.0 363 58.7
CANSAT54G0893 Cannabis sativa HOM05D004847 ORTHO05D005856 2.5e-92 343.2 370 57.8
arahy.Tifrunner.gnm1.ann1.WTPV8B Arachis hypogaea HOM05D004847 ORTHO05D005856 2.1e-91 340.1 402 54.0
Glyma.10G154100 Glycine max HOM05D004847 ORTHO05D005856 2.7e-91 339.7 402 53.0
THA.LOC104818696 Tarenaya hassleriana HOM05D004847 ORTHO05D005856 1.1e-89 334.3 427 52.7
Hund07068 Selenicereus undatus HOM05D004847 ORTHO05D005856 2.5e-89 333.2 376 55.1
Glyma.20G234200 Glycine max HOM05D004847 ORTHO05D005856 7.4e-89 331.6 391 54.7
TWI12G0805 Tripterygium wilfordii HOM05D004847 ORTHO05D005856 1.3e-88 330.9 372 55.6
VMungo0720G3140 Vigna mungo HOM05D004847 ORTHO05D005856 1.3e-88 330.9 367 55.3
Lalb_Chr04g0260731 Lupinus albus HOM05D004847 ORTHO05D005856 4.8e-88 328.9 344 59.0
CSS0017838 Camellia sinensis var. sinensis HOM05D004847 ORTHO05D005856 1.5e-86 323.9 371 54.2
PGR083G0144 Punica granatum HOM05D004847 ORTHO05D005856 1.0e-85 321.2 383 55.4
AUR62000830 Chenopodium quinoa HOM05D004847 ORTHO05D005856 1.1e-84 317.8 382 51.8
ECA240G3864 Erigeron canadensis HOM05D004847 ORTHO05D005856 1.1e-84 317.8 335 57.9
Psat0s3135g0240 Pisum sativum HOM05D004847 ORTHO05D005856 2.1e-83 313.5 400 51.2
AUR62005144 Chenopodium quinoa HOM05D004847 ORTHO05D005856 1.0e-82 311.2 368 51.6
DCAR_029413 Daucus carota HOM05D004847 ORTHO05D005856 2.5e-81 306.6 375 52.3
BraSC132t45510Z Brassica rapa HOM05D004847 ORTHO05D005856 1.6e-80 303.9 456 46.3
CsaV3_2G005250 Cucumis sativus L. HOM05D004847 ORTHO05D005856 1.6e-80 303.9 425 50.1
EL10Ac4g09352 Beta vulgaris HOM05D004847 ORTHO05D005856 8.2e-80 301.6 377 50.4
HanXRQChr09g0248411 Helianthus annuus HOM05D004847 ORTHO05D005856 8.2e-80 301.6 382 50.8
MBI19_g05601_MAGBIO Magnolia biondii HOM05D004847 ORTHO05D005856 1.8e-79 300.4 373 52.0
CARHR079680 Cardamine hirsuta HOM05D004847 ORTHO05D005856 3.1e-79 299.7 489 43.8
BNapus_Darmor_BZH_scaffold_114p00170 Brassica napus HOM05D004847 ORTHO05D005856 5.3e-79 298.9 458 46.1
Actinidia28666 Actinidia chinensis HOM05D004847 ORTHO05D005856 3.4e-78 296.2 303 60.4
Ah.06g189340 Amaranthus hybridus HOM05D004847 ORTHO05D005856 4.5e-78 295.8 376 50.8
BolC1t05700H Brassica oleracea HOM05D004847 ORTHO05D005856 7.7e-78 295.0 455 46.6
Rhsim05G0141800 Rhododendron simsii HOM05D004847 ORTHO05D005856 7.7e-78 295.0 372 52.4
A05p42290 Brassica napus HOM05D004847 ORTHO05D005856 1.9e-76 290.4 462 44.6
Thhalv10020613m.g Eutrema salsugineum HOM05D004847 ORTHO05D005856 2.5e-76 290.0 492 44.1
Lalb_Chr02g0148231 Lupinus albus HOM05D004847 ORTHO05D005856 5.5e-76 288.9 391 50.1
Sed0004129 Sechium edule HOM05D004847 ORTHO05D005856 5.5e-76 288.9 453 45.9
BraA05t23024Z Brassica rapa HOM05D004847 ORTHO05D005856 7.2e-76 288.5 461 44.9
MELO3C004268.2 Cucumis melo HOM05D004847 ORTHO05D005856 9.4e-76 288.1 429 48.0
AL3G15780 Arabidopsis lyrata HOM05D004847 ORTHO05D005856 1.2e-75 287.7 475 44.0
AT3G05330 Arabidopsis thaliana HOM05D004847 ORTHO05D005856 2.7e-75 286.6 400 48.5
C05p61870 Brassica napus HOM05D004847 ORTHO05D005856 1.5e-73 280.8 457 45.3
BolC5t34847H Brassica oleracea HOM05D004847 ORTHO05D005856 1.5e-73 280.8 457 45.3
Carub.0003s0461 Capsella rubella HOM05D004847 ORTHO05D005856 9.7e-73 278.1 486 41.6
ClCG02G015810 Citrullus lanatus HOM05D000141 ORTHO05D001311 2.2e-72 276.9 346 53.2
Medtr7g113510 Medicago truncatula HOM05D004847 ORTHO05D005856 9.1e-71 271.6 431 45.2
Sp3g04200 Schrenkiella parvula HOM05D004847 ORTHO05D005856 3.8e-69 266.2 483 42.7
Lj5g0019148 Lotus japonicus HOM05D004847 ORTHO05D005856 1.1e-68 264.6 470 44.3
Glyma.19G235300 Glycine max HOM05D004847 ORTHO05D005856 2.5e-68 263.5 347 52.2
Aa31LG5G15720 Aethionema arabicum HOM05D000141 ORTHO05D001311 3.6e-67 259.6 423 42.6
BcaC05g30136 Brassica carinata HOM05D004847 ORTHO05D005856 3.0e-66 256.5 334 50.0
CDE10G0375 Ceratophyllum demersum HOM05D004847 ORTHO05D005856 3.9e-66 256.1 327 49.2
SGA_v2.0_scaffold81G26072 Striga asiatica HOM05D004847 ORTHO05D005856 3.9e-66 256.1 389 48.8
Cpa.g.sc48.48 Carica papaya HOM05D004847 ORTHO05D005856 1.3e-64 251.1 250 60.4
HPP92_003277 Vanilla planifolia HOM05D004847 ORTHO05D005856 1.4e-63 247.7 357 46.8
TPR.G33190 Trifolium pratense HOM05D004847 ORTHO05D005856 2.4e-63 246.9 479 40.5
Phvul.006G091600 Phaseolus vulgaris HOM05D004847 ORTHO05D005856 5.3e-63 245.7 415 45.1
TPR.G11389 Trifolium pratense HOM05D004847 ORTHO05D005856 4.2e-60 236.1 268 57.8
SGA_v2.0_scaffold80G25911 Striga asiatica HOM05D004847 ORTHO05D005856 2.1e-59 233.8 368 47.3
Glyma.03G237700 Glycine max HOM05D004847 ORTHO05D005856 6.3e-56 222.2 316 49.7
Zm00001eb286860 Zea mays HOM05D004847 ORTHO05D005856 1.1e-55 221.5 417 42.7
Medtr1g082940 Medicago truncatula HOM05D004847 ORTHO05D005856 9.1e-55 218.4 330 46.7
ATR0626G214 Amborella trichopoda HOM05D004847 ORTHO05D005856 5.9e-54 215.7 383 41.3
CDE10G0883 Ceratophyllum demersum HOM05D004847 ORTHO05D005856 5.5e-52 209.1 437 37.5
BcaC05g30154 Brassica carinata HOM05D004847 ORTHO05D005856 8.0e-51 205.3 263 49.8
Ca_09350_v3 Cicer arietinum L. HOM05D004847 ORTHO05D005856 7.5e-49 198.7 318 47.2
VMungo0540G0069 Vigna mungo HOM05D004847 ORTHO05D005856 8.3e-48 195.3 342 43.0
TPR.G6113 Trifolium pratense HOM05D006420 ORTHO05D008009 1.9e-36 157.5 137 62.8
Manes.08G120800 Manihot esculenta HOM05D004847 ORTHO05D005856 2.5e-36 157.1 372 37.9
Os02g0459300 Oryza sativa ssp. japonica HOM05D004847 ORTHO05D005856 1.3e-32 144.8 266 44.0
Psat0s212g0040 Pisum sativum HOM05D004847 ORTHO05D005856 2.5e-28 130.6 347 36.3
CDE10G0745 Ceratophyllum demersum HOM05D004847 ORTHO05D005856 1.4e-23 114.8 102 62.7
Cpa.g.sc48.49 Carica papaya HOM05D004847 ORTHO05D005856 2.7e-22 110.5 79 70.9
Actinidia19789 Actinidia chinensis HOM05D004847 ORTHO05D005856 1.5e-20 104.8 82 69.5
Zm00001eb269750 Zea mays HOM05D004847 ORTHO05D005856 3.3e-20 103.6 184 39.7
SEGI_00809 Sequoiadendron giganteum HOM05D004847 ORTHO05D005856 2.1e-19 100.9 215 35.8
GSVIVG01000050001 Vitis vinifera HOM05D000141 ORTHO05D001311 3.6e-19 100.1 79 67.1
SHI18142 Sapria himalayana HOM05D000141 ORTHO05D001311 4.0e-18 96.7 349 35.2
Gohir.D12G153350 Gossypium hirsutum HOM05D004847 ORTHO05D005856 1.9e-15 87.8 68 61.8
Zm00001eb092520 Zea mays HOM05D004847 ORTHO05D005856 5.4e-15 86.3 171 41.5
MD02G1275700 Malus domestica HOM05D004847 ORTHO05D005856 1.2e-14 85.1 63 65.1
MD00G1120700 Malus domestica HOM05D004847 ORTHO05D005856 2.1e-14 84.3 63 65.1
Gorai.004G124500 Gossypium raimondii HOM05D004847 ORTHO05D005856 4.6e-14 83.2 72 55.6
Ca_09354_v3 Cicer arietinum L. HOM05D004847 ORTHO05D005856 7.8e-14 82.4 59 71.2
Psat3g073720 Pisum sativum HOM05D004847 ORTHO05D005856 1.0e-13 82.0 122 43.4
Lsat_1_v5_gn_8_18301 Lactuca sativa HOM05D004847 ORTHO05D005856 1.1e-12 78.6 96 45.8
SEGI_03169 Sequoiadendron giganteum HOM05D004847 ORTHO05D005856 1.1e-12 78.6 219 33.3
Gohir.D08G115550 Gossypium hirsutum HOM05D004847 ORTHO05D005856 8.1e-11 72.4 63 58.7
BolC1t05697H Brassica oleracea HOM05D004847 ORTHO05D005856 1.1e-07 62.0 101 45.5
C05p10080 Brassica napus HOM05D004847 ORTHO05D005856 1.9e-07 61.2 235 32.8
Gohir.A01G045000 Gossypium hirsutum HOM05D004847 ORTHO05D005856 9.2e-07 58.9 54 57.4
Gohir.D04G107600 Gossypium hirsutum HOM05D004847 ORTHO05D005856 9.2e-07 58.9 54 57.4
Gohir.D09G147300 Gossypium hirsutum HOM05D004847 ORTHO05D005856 9.2e-07 58.9 54 57.4
Gohir.D10G096100 Gossypium hirsutum HOM05D004847 ORTHO05D005856 9.2e-07 58.9 54 57.4
Gohir.A10G185000 Gossypium hirsutum HOM05D000639 ORTHO05D020118 1.2e-06 58.5 54 57.4
Gohir.D07G076600 Gossypium hirsutum HOM05D000639 ORTHO05D020118 2.1e-06 57.8 54 55.6
Gohir.D10G149400 Gossypium hirsutum HOM05D000639 ORTHO05D020118 2.7e-06 57.4 54 55.6


User provided reference genes

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