Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow3G4134 Salvia bowleyana HOM05D004626 ORTHO05D005185 8.5e-76 287.0 148 100.0
Oeu056607.1 Olea europaea HOM05D004626 ORTHO05D005185 3.4e-40 168.7 125 68.0
MSTRG.2568 Avicennia marina HOM05D004626 ORTHO05D005185 1.4e-38 163.3 124 66.9
SGA_v2.0_scaffold54G19499 Striga asiatica HOM05D004626 ORTHO05D005185 1.6e-37 159.8 124 63.7
Migut.H02360 Erythranthe guttata HOM05D004626 ORTHO05D005185 4.5e-37 158.3 127 63.8
SGA_v2.0_scaffold111G31515 Striga asiatica HOM05D004626 ORTHO05D005185 1.7e-36 156.4 124 62.9
DCAR_014224 Daucus carota HOM05D004626 ORTHO05D005185 3.0e-28 129.0 134 56.0
Solyc11g011140.2 Solanum lycopersicum HOM05D004626 ORTHO05D005185 8.6e-28 127.5 138 54.3
Sopen11g005900 Solanum pennellii HOM05D004626 ORTHO05D005185 8.6e-28 127.5 138 54.3
Cfa002662 Carpinus fangiana HOM05D004626 ORTHO05D005185 1.5e-27 126.7 121 58.7
Haze_24931 Corylus avellana HOM05D004626 ORTHO05D005185 1.5e-27 126.7 121 58.7
Dinv21908 Davidia involucrata HOM05D004626 ORTHO05D005185 1.9e-27 126.3 125 57.6
DCAR_001782 Daucus carota HOM05D004626 ORTHO05D005185 2.5e-27 125.9 134 54.5
Lj4A891T55 Lonicera japonica HOM05D004626 ORTHO05D005185 3.3e-27 125.6 142 54.2
GSVIVG01002466001 Vitis vinifera HOM05D004626 ORTHO05D005185 4.3e-27 125.2 120 59.2
Phvul.L001740 Phaseolus vulgaris HOM05D004626 ORTHO05D005185 7.3e-27 124.4 122 54.9
Phvul.L002040 Phaseolus vulgaris HOM05D004626 ORTHO05D005185 7.3e-27 124.4 122 54.9
TAR628G0369 Trochodendron aralioides HOM05D004626 ORTHO05D005185 9.5e-27 124.0 119 57.1
Nitab4.5_0000308g0400 Nicotiana tabacum HOM05D004626 ORTHO05D005185 1.2e-26 123.6 131 56.5
Phvul.008G217800 Phaseolus vulgaris HOM05D004626 ORTHO05D005185 1.2e-26 123.6 122 54.9
CiPaw.03G141900 Carya illinoinensis HOM05D004626 ORTHO05D005185 2.1e-26 122.9 121 58.7
Nitab4.5_0002169g0010 Nicotiana tabacum HOM05D004626 ORTHO05D005185 2.8e-26 122.5 126 55.6
Nitab4.5_0003026g0030 Nicotiana tabacum HOM05D004626 ORTHO05D005185 2.8e-26 122.5 130 55.4
Nn2g14516 Nelumbo nucifera HOM05D004626 ORTHO05D005185 3.6e-26 122.1 117 60.7
Hund13624 Selenicereus undatus HOM05D004626 ORTHO05D005185 3.6e-26 122.1 121 55.4
Ah.02g122510 Amaranthus hybridus HOM05D004626 ORTHO05D005185 6.2e-26 121.3 128 56.2
HanXRQChr10g0305361 Helianthus annuus HOM05D004626 ORTHO05D005185 6.2e-26 121.3 134 52.2
Sc20g0005870 Simmondsia chinensis HOM05D004626 ORTHO05D005185 8.0e-26 120.9 119 57.1
Peaxi162Scf00611g00021 Petunia axillaris HOM05D004626 ORTHO05D005185 1.1e-25 120.6 132 55.3
Psat5g090160 Pisum sativum HOM05D004626 ORTHO05D005185 1.1e-25 120.6 146 46.6
ECA232G0540 Erigeron canadensis HOM05D004626 ORTHO05D001353 1.4e-25 120.2 128 53.1
CAN.G222.27 Capsicum annuum HOM05D004626 ORTHO05D005185 2.3e-25 119.4 131 48.9
CANSAT01G3216 Cannabis sativa HOM05D004626 ORTHO05D005185 3.1e-25 119.0 129 50.4
Ca_16525_v3 Cicer arietinum L. HOM05D004626 ORTHO05D005185 3.1e-25 119.0 121 50.4
Eucgr.I00432 Eucalyptus grandis HOM05D004626 ORTHO05D005185 3.1e-25 119.0 121 53.7
AUR62003794 Chenopodium quinoa HOM05D004626 ORTHO05D005185 4.0e-25 118.6 122 54.1
Nitab4.5_0000004g0320 Nicotiana tabacum HOM05D004626 ORTHO05D005185 4.0e-25 118.6 131 54.2
TAR381G1723 Trochodendron aralioides HOM05D004626 ORTHO05D005185 4.0e-25 118.6 122 54.9
unitig_749.g13443 Utricularia gibba HOM05D004626 ORTHO05D005185 5.2e-25 118.2 135 51.9
Sc16g0005030 Simmondsia chinensis HOM05D004626 ORTHO05D005185 8.9e-25 117.5 119 55.5
AUR62002008 Chenopodium quinoa HOM05D004626 ORTHO05D005185 1.2e-24 117.1 122 54.1
Lj6g0027398 Lotus japonicus HOM05D004626 ORTHO05D005185 1.2e-24 117.1 132 50.0
CDE10G0605 Ceratophyllum demersum HOM05D004626 ORTHO05D005185 1.5e-24 116.7 129 49.6
CsaV3_4G008860 Cucumis sativus L. HOM05D004626 ORTHO05D005185 1.5e-24 116.7 126 54.8
TWI53G1689 Tripterygium wilfordii HOM05D004626 ORTHO05D005185 1.5e-24 116.7 122 54.1
Dinv13189 Davidia involucrata HOM05D004626 ORTHO05D005185 2.0e-24 116.3 137 51.8
Lsat_1_v5_gn_4_141400 Lactuca sativa HOM05D004626 ORTHO05D005185 2.6e-24 115.9 132 50.8
Sp7g36010 Schrenkiella parvula HOM05D004626 ORTHO05D005185 2.6e-24 115.9 126 54.8
AT4G39880 Arabidopsis thaliana HOM05D004626 ORTHO05D005185 3.4e-24 115.5 127 54.3
Cc07_g15200 Coffea canephora HOM05D004626 ORTHO05D005185 3.4e-24 115.5 131 51.1
Lalb_Chr11g0075381 Lupinus albus HOM05D004626 ORTHO05D005185 4.4e-24 115.2 128 48.4
Manes.12G134800 Manihot esculenta HOM05D004626 ORTHO05D005185 4.4e-24 115.2 121 53.7
AL7G12120 Arabidopsis lyrata HOM05D004626 ORTHO05D005185 5.8e-24 114.8 128 53.1
Carub.0007s0181 Capsella rubella HOM05D004626 ORTHO05D005185 5.8e-24 114.8 127 54.3
ClCG10G009000 Citrullus lanatus HOM05D004626 ORTHO05D005185 5.8e-24 114.8 122 54.9
Hund16286 Selenicereus undatus HOM05D004626 ORTHO05D005185 5.8e-24 114.8 119 56.3
Hma1.2p1_0308F.1_g120190 Hydrangea macrophylla HOM05D004626 ORTHO05D005185 7.5e-24 114.4 124 52.4
Thhalv10026378m.g Eutrema salsugineum HOM05D004626 ORTHO05D005185 2.2e-23 112.8 126 54.0
BcaNung00909 Brassica carinata HOM05D004626 ORTHO05D005185 2.9e-23 112.5 131 52.7
C01p00890 Brassica napus HOM05D004626 ORTHO05D005185 2.9e-23 112.5 131 52.7
BolC1t00090H Brassica oleracea HOM05D004626 ORTHO05D005185 2.9e-23 112.5 131 52.7
Cpa.g.sc974.3 Carica papaya HOM05D004626 ORTHO05D005185 2.9e-23 112.5 121 55.4
MBI05_g19353_MAGBIO Magnolia biondii HOM05D004626 ORTHO05D005185 2.9e-23 112.5 82 67.1
QL06p049512 Quercus lobata HOM05D004626 ORTHO05D005185 2.9e-23 112.5 128 50.0
CARHR246820 Cardamine hirsuta HOM05D004626 ORTHO05D005185 3.7e-23 112.1 133 52.6
PSO541G2613 Papaver somniferum HOM05D004626 ORTHO05D005185 3.7e-23 112.1 132 50.8
TPR.G17855 Trifolium pratense HOM05D004626 ORTHO05D005185 4.9e-23 111.7 132 49.2
EL10Ac6g15105 Beta vulgaris HOM05D004626 ORTHO05D005185 6.4e-23 111.3 119 50.4
A01p00780 Brassica napus HOM05D004626 ORTHO05D005185 6.4e-23 111.3 128 52.3
BraA01t00081Z Brassica rapa HOM05D004626 ORTHO05D005185 6.4e-23 111.3 128 52.3
FAN23G0429 Fragaria x ananassa HOM05D004626 ORTHO05D005185 6.4e-23 111.3 122 53.3
FAN26G0520 Fragaria x ananassa HOM05D004626 ORTHO05D005185 6.4e-23 111.3 122 53.3
PSO781G0234 Papaver somniferum HOM05D004626 ORTHO05D005185 6.4e-23 111.3 133 49.6
Sed0012532 Sechium edule HOM05D004626 ORTHO05D005185 6.4e-23 111.3 125 48.0
Actinidia28864 Actinidia chinensis HOM05D004626 ORTHO05D005185 8.3e-23 110.9 135 48.1
VMungo0647G0150 Vigna mungo HOM05D004626 ORTHO05D005185 8.3e-23 110.9 122 49.2
MD01G1030100 Malus domestica HOM05D004626 ORTHO05D005185 1.4e-22 110.2 122 52.5
Thecc.01G101400 Theobroma cacao HOM05D004626 ORTHO05D005185 1.4e-22 110.2 123 53.7
MELO3C018951.2 Cucumis melo HOM05D004626 ORTHO05D005185 1.9e-22 109.8 126 52.4
MD15G1324000 Malus domestica HOM05D004626 ORTHO05D005185 1.9e-22 109.8 122 52.5
Gohir.D11G221600 Gossypium hirsutum HOM05D004626 ORTHO05D005185 3.2e-22 109.0 120 52.5
Duzib147G1109 Durio zibethinus HOM05D004626 ORTHO05D005185 4.1e-22 108.6 120 53.3
FAN19G0994 Fragaria x ananassa HOM05D004626 ORTHO05D005185 4.1e-22 108.6 123 53.7
BcaNung02302 Brassica carinata HOM05D004626 ORTHO05D005185 5.4e-22 108.2 132 50.8
Glyma.18G017100 Glycine max HOM05D004626 ORTHO05D005185 5.4e-22 108.2 124 50.0
C07p62810 Brassica napus HOM05D004626 ORTHO05D005185 7.0e-22 107.8 127 51.2
Aa31LG6G15380 Aethionema arabicum HOM05D004626 ORTHO05D005185 1.2e-21 107.1 124 54.0
Gohir.A11G201300 Gossypium hirsutum HOM05D004626 ORTHO05D005185 1.2e-21 107.1 120 52.5
Aqoxy6G00796 Aquilegia oxysepala HOM05D004626 ORTHO05D005185 1.6e-21 106.7 136 45.6
CSS0038413 Camellia sinensis var. sinensis HOM05D004626 ORTHO05D005185 1.6e-21 106.7 141 48.9
FvH4_1g20880 Fragaria vesca HOM05D004626 ORTHO05D005185 1.6e-21 106.7 123 52.8
Gorai.007G238600 Gossypium raimondii HOM05D004626 ORTHO05D005185 1.6e-21 106.7 120 50.8
Sabra05G0062000 Salix brachista HOM05D004626 ORTHO05D005185 1.6e-21 106.7 121 52.9
A03p65840 Brassica napus HOM05D004626 ORTHO05D005185 2.1e-21 106.3 129 50.4
BraA03t15636Z Brassica rapa HOM05D004626 ORTHO05D005185 2.1e-21 106.3 129 50.4
THA.LOC104807692 Tarenaya hassleriana HOM05D004626 ORTHO05D005185 2.1e-21 106.3 124 53.2
TWI77G0829 Tripterygium wilfordii HOM05D004626 ORTHO05D005185 3.5e-21 105.5 147 45.6
Medtr3g087190 Medicago truncatula HOM05D004626 ORTHO05D005185 4.6e-21 105.1 146 43.8
Prupe.6G187100 Prunus persica HOM05D004626 ORTHO05D005185 4.6e-21 105.1 119 48.7
Potri.005G075500 Populus trichocarpa HOM05D004626 ORTHO05D005185 7.8e-21 104.4 127 51.2
arahy.Tifrunner.gnm1.ann1.IYB3ER Arachis hypogaea HOM05D004626 ORTHO05D005185 1.0e-20 104.0 136 46.3
arahy.Tifrunner.gnm1.ann1.ZXJH7W Arachis hypogaea HOM05D004626 ORTHO05D005185 1.0e-20 104.0 136 46.3
PGR102G1283 Punica granatum HOM05D004626 ORTHO05D005185 1.7e-20 103.2 121 49.6
RcHm_v2.0_Chr2g0113491 Rosa chinensis HOM05D004626 ORTHO05D005185 1.7e-20 103.2 121 48.8
vmacro18600 Vaccinium macrocarpon HOM05D004626 ORTHO05D005185 2.3e-20 102.8 103 54.4
Nitab4.5_0012380g0020 Nicotiana tabacum HOM05D004626 ORTHO05D005185 3.0e-20 102.4 126 47.6
Ciclev10026391m.g Citrus clementina HOM05D004626 ORTHO05D005185 5.1e-20 101.7 119 47.9
Rhsim08G0010500 Rhododendron simsii HOM05D004626 ORTHO05D005185 5.1e-20 101.7 98 56.1
BcaNung06392 Brassica carinata HOM05D004626 ORTHO05D005185 8.6e-20 100.9 130 47.7
Duzib264G0371 Durio zibethinus HOM05D004626 ORTHO05D005185 4.3e-19 98.6 95 54.7
Atru.chr4.63 Acer truncatum HOM05D004626 ORTHO05D005185 5.6e-19 98.2 132 48.5
HPP92_019309 Vanilla planifolia HOM05D004626 ORTHO05D005185 1.6e-18 96.7 135 45.9
ATR0693G394 Amborella trichopoda HOM05D004626 ORTHO05D005185 2.8e-18 95.9 127 41.7
BcaNung03404 Brassica carinata HOM05D004626 ORTHO05D005185 5.2e-17 91.7 128 44.5
BolC7t46695H Brassica oleracea HOM05D004626 ORTHO05D005185 5.2e-17 91.7 128 44.5
arahy.Tifrunner.gnm1.ann1.VCFG2H Arachis hypogaea HOM05D004626 ORTHO05D005185 2.2e-15 86.3 67 62.7
TAR381G1658 Trochodendron aralioides HOM05D004626 ORTHO05D005185 3.7e-15 85.5 66 60.6
SHI34078 Sapria himalayana HOM05D004626 ORTHO05D005185 1.9e-14 83.2 118 44.1
SEGI_37892 Sequoiadendron giganteum HOM05D004626 ORTHO05D005185 2.4e-14 82.8 97 45.4
Cfa005597 Carpinus fangiana HOM05D004626 ORTHO05D005185 9.2e-14 80.9 76 56.6
Zm00001eb120260 Zea mays HOM05D004626 ORTHO05D005185 9.2e-14 80.9 131 40.5
COL.COLO4_09965 Corchorus olitorius HOM05D004626 ORTHO05D005185 4.6e-13 78.6 47 78.7
FAN28G0327 Fragaria x ananassa HOM05D004626 ORTHO05D005185 6.0e-13 78.2 122 44.3
TPR.G17173 Trifolium pratense HOM05D004626 ORTHO05D005185 6.0e-13 78.2 47 74.5
Os07g0415200 Oryza sativa ssp. japonica HOM05D004626 ORTHO05D005185 7.8e-13 77.8 130 41.5
VMungo1383G1685 Vigna mungo HOM05D004626 ORTHO05D005185 2.3e-12 76.3 66 57.6
CiPaw.05G035400 Carya illinoinensis HOM05D004626 ORTHO05D005185 1.1e-11 73.9 56 64.3
QL11p020935 Quercus lobata HOM05D004626 ORTHO05D005185 1.1e-11 73.9 54 64.8
QL11p021166 Quercus lobata HOM05D004626 ORTHO05D005185 1.1e-11 73.9 54 64.8
Glyma.08G135700 Glycine max HOM05D004626 ORTHO05D005185 2.5e-11 72.8 59 57.6
Glyma.05G178600 Glycine max HOM05D004626 ORTHO05D005185 4.3e-11 72.0 59 57.6
Lalb_Chr22g0353781 Lupinus albus HOM05D004626 ORTHO05D005185 3.6e-10 68.9 47 61.7
Lj4g0016107 Lotus japonicus HOM05D004626 ORTHO05D005185 8.1e-10 67.8 59 50.8
Lalb_Chr12g0203831 Lupinus albus HOM05D004626 ORTHO05D005185 8.1e-10 67.8 47 61.7
Nitab4.5_0006375g0050 Nicotiana tabacum HOM05D004626 ORTHO05D005185 1.1e-09 67.4 48 75.0
Phvul.002G256100 Phaseolus vulgaris HOM05D004626 ORTHO05D005185 1.4e-09 67.0 57 49.1
TPR.G6292 Trifolium pratense HOM05D004626 ORTHO05D005185 1.4e-09 67.0 63 50.8
VMungo0251G0963 Vigna mungo HOM05D004626 ORTHO05D005185 1.4e-09 67.0 57 52.6
Pp3c1_13270 Physcomitrium patens HOM05D004626 ORTHO05D005185 1.5e-08 63.5 64 56.2
Mapoly0065s0037 Marchantia polymorpha HOM05D004626 ORTHO05D005185 7.6e-08 61.2 53 56.6
MD06G1167700 Malus domestica HOM05D004626 ORTHO05D005185 1.7e-07 60.1 64 45.3
THA.LOC104818439 Tarenaya hassleriana HOM05D004626 ORTHO05D005185 1.7e-07 60.1 51 56.9
Potri.007G093100 Populus trichocarpa HOM05D004626 ORTHO05D005185 4.2e-06 55.5 100 39.0
Nn1g04969 Nelumbo nucifera HOM05D004626 ORTHO05D005185 9.2e-06 54.3 52 53.8


User provided reference genes

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