Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow3G3973 Salvia bowleyana HOM05D006797 ORTHO05D007696 4.6e-47 191.0 107 100.0
SGA_v2.0_scaffold44G16576 Striga asiatica HOM05D001006 ORTHO05D000868 3.0e-30 135.2 110 73.6
SGA_v2.0_scaffold60G20810 Striga asiatica HOM05D006797 ORTHO05D007696 6.6e-30 134.0 110 70.0
Migut.F00519 Erythranthe guttata HOM05D006797 ORTHO05D007696 2.5e-29 132.1 118 69.5
MSTRG.8842 Avicennia marina HOM05D006797 ORTHO05D007696 4.8e-28 127.9 118 66.9
Manes.03G071800 Manihot esculenta HOM05D006797 ORTHO05D007696 2.0e-26 122.5 115 63.5
Oeu036765.2 Olea europaea HOM05D006797 ORTHO05D007696 2.0e-26 122.5 124 61.3
Sc24g0002860 Simmondsia chinensis HOM05D006797 ORTHO05D007696 4.9e-25 117.9 117 62.4
Peaxi162Scf00036g02019 Petunia axillaris HOM05D006797 ORTHO05D007696 8.4e-25 117.1 109 67.9
Solyc02g082020.3 Solanum lycopersicum HOM05D006797 ORTHO05D007696 1.1e-24 116.7 116 67.2
Ah.15g091850 Amaranthus hybridus HOM05D006797 ORTHO05D007696 1.4e-24 116.3 112 64.3
PGSC0003DMG400007337 Solanum tuberosum HOM05D006797 ORTHO05D007696 2.4e-24 115.5 116 66.4
HanXRQChr12g0377351 Helianthus annuus HOM05D006797 ORTHO05D007696 3.2e-24 115.2 112 60.7
Nitab4.5_0000632g0020 Nicotiana tabacum HOM05D006797 ORTHO05D007696 3.2e-24 115.2 116 66.4
Cc09_g04790 Coffea canephora HOM05D006797 ORTHO05D007696 4.2e-24 114.8 113 66.4
Sopen02g026660 Solanum pennellii HOM05D006797 ORTHO05D007696 7.1e-24 114.0 116 65.5
ECA248G3234 Erigeron canadensis HOM05D006797 ORTHO05D007696 9.3e-24 113.6 111 58.6
Sed0011432 Sechium edule HOM05D006797 ORTHO05D007696 9.3e-24 113.6 111 68.5
CAN.G809.30 Capsicum annuum HOM05D006797 ORTHO05D007696 2.7e-23 112.1 116 63.8
CSS0049260 Camellia sinensis var. sinensis HOM05D006797 ORTHO05D007696 3.5e-23 111.7 123 62.6
EL10Ac7g17249 Beta vulgaris HOM05D006797 ORTHO05D007696 1.0e-22 110.2 116 60.3
Lalb_Chr07g0188191 Lupinus albus HOM05D006797 ORTHO05D007696 1.8e-22 109.4 106 64.2
Nitab4.5_0003902g0030 Nicotiana tabacum HOM05D006797 ORTHO05D007696 1.8e-22 109.4 115 64.3
Potri.003G155400 Populus trichocarpa HOM05D006797 ORTHO05D007696 1.8e-22 109.4 122 53.3
TAR626G0010 Trochodendron aralioides HOM05D006797 ORTHO05D007696 6.7e-22 107.5 121 62.8
Glyma.08G089600 Glycine max HOM05D006797 ORTHO05D007696 8.7e-22 107.1 109 67.9
Glyma.05G134500 Glycine max HOM05D006797 ORTHO05D007696 1.5e-21 106.3 109 66.1
Phvul.002G187600 Phaseolus vulgaris HOM05D006797 ORTHO05D007696 1.5e-21 106.3 109 61.5
Rhsim13G0134800 Rhododendron simsii HOM05D006797 ORTHO05D007696 1.5e-21 106.3 124 55.6
arahy.Tifrunner.gnm1.ann1.30I9D2 Arachis hypogaea HOM05D006797 ORTHO05D007696 1.3e-20 103.2 110 61.8
arahy.Tifrunner.gnm1.ann1.3X9X11 Arachis hypogaea HOM05D006797 ORTHO05D007696 1.3e-20 103.2 110 61.8
PGR042G0784 Punica granatum HOM05D006797 ORTHO05D007696 1.6e-20 102.8 120 55.0
Ciclev10017227m.g Citrus clementina HOM05D006797 ORTHO05D007696 2.1e-20 102.4 112 60.7
Lsat_1_v5_gn_3_103300 Lactuca sativa HOM05D006797 ORTHO05D007696 2.1e-20 102.4 105 57.1
GSVIVG01012170001 Vitis vinifera HOM05D006797 ORTHO05D007696 2.1e-20 102.4 125 59.2
ClCG01G025860 Citrullus lanatus HOM05D006797 ORTHO05D007696 2.8e-20 102.1 117 59.8
CsaV3_6G053080 Cucumis sativus L. HOM05D006797 ORTHO05D007696 1.1e-19 100.1 119 58.0
MELO3C007002.2 Cucumis melo HOM05D006797 ORTHO05D007696 1.4e-19 99.8 117 58.1
QL11p011767 Quercus lobata HOM05D006797 ORTHO05D007696 1.4e-19 99.8 119 57.1
Lj4g0013366 Lotus japonicus HOM05D006797 ORTHO05D007696 1.8e-19 99.4 96 67.7
RcHm_v2.0_Chr5g0021541 Rosa chinensis HOM05D006797 ORTHO05D007696 1.8e-19 99.4 122 53.3
AUR62042807 Chenopodium quinoa HOM05D006797 ORTHO05D007696 3.1e-19 98.6 107 56.1
Hund23985 Selenicereus undatus HOM05D006797 ORTHO05D007696 3.1e-19 98.6 114 58.8
Prupe.4G119300 Prunus persica HOM05D006797 ORTHO05D007696 4.0e-19 98.2 120 55.8
CiPaw.10G107100 Carya illinoinensis HOM05D006797 ORTHO05D007696 6.9e-19 97.4 114 57.9
Psat7g087040 Pisum sativum HOM05D006797 ORTHO05D007696 3.4e-18 95.1 113 60.2
MD10G1226000 Malus domestica HOM05D006797 ORTHO05D007696 4.5e-18 94.7 120 54.2
Nn1g05854 Nelumbo nucifera HOM05D006797 ORTHO05D007696 4.5e-18 94.7 114 57.0
VMungo0251G2933 Vigna mungo HOM05D006797 ORTHO05D007696 5.8e-18 94.4 100 63.0
TPR.G27392 Trifolium pratense HOM05D006797 ORTHO05D007696 7.6e-18 94.0 112 57.1
Medtr4g094782 Medicago truncatula HOM05D006797 ORTHO05D007696 9.9e-18 93.6 112 58.9
Ca_18220_v3 Cicer arietinum L. HOM05D006797 ORTHO05D007696 1.7e-17 92.8 113 59.3
Dinv03172 Davidia involucrata HOM05D006797 ORTHO05D007696 1.7e-17 92.8 123 53.7
THA.LOC104812696 Tarenaya hassleriana HOM05D006797 ORTHO05D007696 2.9e-17 92.0 123 54.5
Cpa.g.sc30.90 Carica papaya HOM05D006797 ORTHO05D007696 4.9e-17 91.3 104 58.7
Duzib211G0055 Durio zibethinus HOM05D006797 ORTHO05D007696 6.4e-17 90.9 123 53.7
Zm00001eb430680 Zea mays HOM05D006797 ORTHO05D007696 1.1e-16 90.1 111 54.1
TWI38G0311 Tripterygium wilfordii HOM05D006797 ORTHO05D007696 1.4e-16 89.7 113 54.0
Aqoxy3G03581 Aquilegia oxysepala HOM05D006409 ORTHO05D008250 1.9e-16 89.4 124 50.0
Gorai.010G130400 Gossypium raimondii HOM05D006797 ORTHO05D007696 1.9e-16 89.4 122 53.3
Zm00001eb071100 Zea mays HOM05D006797 ORTHO05D007696 3.2e-16 88.6 111 53.2
PSO675G1942 Papaver somniferum HOM05D006797 ORTHO05D007696 4.2e-16 88.2 113 51.3
CDE05G1867 Ceratophyllum demersum HOM05D006797 ORTHO05D007696 9.3e-16 87.0 114 51.8
Gohir.A06G110200 Gossypium hirsutum HOM05D006797 ORTHO05D007696 9.3e-16 87.0 122 52.5
Gohir.D06G114100 Gossypium hirsutum HOM05D006797 ORTHO05D007696 9.3e-16 87.0 122 53.3
Hma1.2p1_1220F.1_g268030 Hydrangea macrophylla HOM05D006797 ORTHO05D007696 9.3e-16 87.0 126 52.4
Atru.chr10.261 Acer truncatum HOM05D006797 ORTHO05D007696 1.2e-15 86.7 112 53.6
PSO541G4265 Papaver somniferum HOM05D006797 ORTHO05D007696 1.2e-15 86.7 113 50.4
Zm00001eb442340 Zea mays HOM05D006797 ORTHO05D007696 2.1e-15 85.9 94 57.4
FAN16G2513 Fragaria x ananassa HOM05D006797 ORTHO05D007696 2.7e-15 85.5 109 52.3
Os04g0611300 Oryza sativa ssp. japonica HOM05D006797 ORTHO05D007696 4.6e-15 84.7 113 52.2
FAN21G4013 Fragaria x ananassa HOM05D006797 ORTHO05D007696 1.3e-14 83.2 109 51.4
FAN25G1182 Fragaria x ananassa HOM05D006797 ORTHO05D007696 1.8e-14 82.8 109 51.4
Dinv02379 Davidia involucrata HOM05D006797 ORTHO05D007696 6.7e-14 80.9 105 54.3
FvH4_3g13200 Fragaria vesca HOM05D006797 ORTHO05D007696 6.7e-14 80.9 109 50.5
FAN11G3985 Fragaria x ananassa HOM05D006797 ORTHO05D007696 6.7e-14 80.9 109 50.5
HPP92_013198 Vanilla planifolia HOM05D006797 ORTHO05D007696 8.7e-14 80.5 121 48.8
vmacro03563 Vaccinium macrocarpon HOM05D006797 ORTHO05D007696 1.1e-13 80.1 79 62.0
SalBow1G7846 Salvia bowleyana HOM05D037885 ORTHO05D007696 4.3e-13 78.2 71 73.2
A08p10910 Brassica napus HOM05D006797 ORTHO05D007696 7.4e-13 77.4 120 51.7
BcaC07g37796 Brassica carinata HOM05D006797 ORTHO05D007696 9.6e-13 77.0 119 51.3
CANSAT35G2044 Cannabis sativa HOM05D006797 ORTHO05D007696 1.3e-12 76.6 110 47.3
SalBow3G4021 Salvia bowleyana HOM05D037885 ORTHO05D007696 1.6e-12 76.3 78 67.9
SalBow1G3404 Salvia bowleyana HOM05D037885 ORTHO05D007696 3.7e-12 75.1 69 72.5
A07p09570 Brassica napus HOM05D006797 ORTHO05D007696 4.8e-12 74.7 115 51.3
BraA07t28751Z Brassica rapa HOM05D006797 ORTHO05D007696 4.8e-12 74.7 115 51.3
COL.COLO4_25039 Corchorus olitorius HOM05D006797 ORTHO05D007696 6.2e-12 74.3 99 53.5
Aa31LG6G12300 Aethionema arabicum HOM05D006797 ORTHO05D007696 8.2e-12 73.9 122 50.0
Sp1g26780 Schrenkiella parvula HOM05D006797 ORTHO05D007696 8.2e-12 73.9 122 50.8
BcaB04g18200 Brassica carinata HOM05D006797 ORTHO05D007696 1.8e-11 72.8 125 49.6
Haze_24216 Corylus avellana HOM05D006797 ORTHO05D007696 1.8e-11 72.8 129 48.1
AT1G30880 Arabidopsis thaliana HOM05D006797 ORTHO05D007696 2.4e-11 72.4 119 50.4
BraA08t33088Z Brassica rapa HOM05D006797 ORTHO05D007696 2.4e-11 72.4 122 50.0
BolC8t48187H Brassica oleracea HOM05D006797 ORTHO05D007696 3.1e-11 72.0 120 48.3
unitig_37.g11921 Utricularia gibba HOM05D006797 ORTHO05D007696 3.1e-11 72.0 53 71.7
Haze_05201 Corylus avellana HOM05D000001 ORTHO05D010268 4.0e-11 71.6 50 78.0
Haze_15747 Corylus avellana HOM05D006797 ORTHO05D007696 4.0e-11 71.6 50 78.0
ATR0763G022 Amborella trichopoda HOM05D006797 ORTHO05D007696 5.3e-11 71.2 108 48.1
A09p35270 Brassica napus HOM05D006797 ORTHO05D007696 5.3e-11 71.2 117 49.6
BcaB07g32754 Brassica carinata HOM05D006797 ORTHO05D007696 6.9e-11 70.9 122 50.0
Thhalv10009126m.g Eutrema salsugineum HOM05D006797 ORTHO05D007696 6.9e-11 70.9 122 49.2
Sabra03G0112800 Salix brachista HOM05D006797 ORTHO05D007696 6.9e-11 70.9 57 64.9
Thecc.02G002300 Theobroma cacao HOM05D006797 ORTHO05D007696 1.2e-10 70.1 57 68.4
AL1G45170 Arabidopsis lyrata HOM05D006797 ORTHO05D007696 1.5e-10 69.7 120 49.2
MBI18_g20922_MAGBIO Magnolia biondii HOM05D006797 ORTHO05D007696 1.5e-10 69.7 119 45.4
DCAR_001265 Daucus carota HOM05D006797 ORTHO05D007696 2.6e-10 68.9 99 53.5
Carub.0001s2922 Capsella rubella HOM05D006797 ORTHO05D007696 3.4e-10 68.6 118 50.0
BcaC05g27127 Brassica carinata HOM05D006797 ORTHO05D007696 7.6e-10 67.4 122 48.4
C05p30120 Brassica napus HOM05D006797 ORTHO05D007696 7.6e-10 67.4 122 48.4
BraA09t39054Z Brassica rapa HOM05D006797 ORTHO05D007696 7.6e-10 67.4 122 47.5
BolC7t41975H Brassica oleracea HOM05D006797 ORTHO05D007696 1.0e-09 67.0 121 47.1
C07p14730 Brassica napus HOM05D006797 ORTHO05D007696 2.2e-09 65.9 121 46.3
Oeu008734.1 Olea europaea HOM05D016541 ORTHO05D007696 1.9e-08 62.8 64 59.4
CARHR030370 Cardamine hirsuta HOM05D006797 ORTHO05D007696 2.5e-08 62.4 120 45.8
Pp3c24_14860 Physcomitrium patens HOM05D006797 ORTHO05D007696 3.2e-08 62.0 118 44.9
Peaxi162Scf00036g00205 Petunia axillaris HOM05D018135 ORTHO05D020298 4.2e-08 61.6 52 69.2
BolC5t31749H Brassica oleracea HOM05D006797 ORTHO05D007696 5.5e-08 61.2 127 44.9
Hma1.2p1_0747F.1_g212490 Hydrangea macrophylla HOM05D006797 ORTHO05D007696 9.3e-08 60.5 66 56.1
AagrBONN_evm.TU.Sc2ySwM_117.639 Anthoceros agrestis HOM05D006797 ORTHO05D007696 6.0e-07 57.8 127 40.2
Mapoly0051s0054 Marchantia polymorpha HOM05D006797 ORTHO05D007696 1.8e-06 56.2 120 40.8
SalBow8G3050 Salvia bowleyana HOM05D067447 ORTHO05D007696 8.7e-06 53.9 74 48.6


User provided reference genes

Program Settings