Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow3G3891 Salvia bowleyana HOM05D002663 ORTHO05D002988 2.6e-62 241.9 121 100.0
MSTRG.21915 Avicennia marina HOM05D002663 ORTHO05D002988 7.5e-30 134.0 91 76.9
Migut.N00273 Erythranthe guttata HOM05D002663 ORTHO05D002988 1.0e-26 123.6 104 68.3
unitig_26.g9552 Utricularia gibba HOM05D002663 ORTHO05D002988 5.0e-26 121.3 79 79.7
SGA_v2.0_scaffold31G12664 Striga asiatica HOM05D002663 ORTHO05D002988 2.5e-25 119.0 103 67.0
Oeu011504.1 Olea europaea HOM05D002663 ORTHO05D002988 9.8e-22 107.1 96 60.4
Gorai.002G025400 Gossypium raimondii HOM05D002663 ORTHO05D002988 6.4e-21 104.4 104 55.8
COL.COLO4_15882 Corchorus olitorius HOM05D002663 ORTHO05D002988 1.4e-20 103.2 98 58.2
CAN.G374.14 Capsicum annuum HOM05D002663 ORTHO05D002988 3.2e-20 102.1 70 71.4
CSS0029715 Camellia sinensis var. sinensis HOM05D002663 ORTHO05D002988 7.0e-20 100.9 120 50.0
Cc03_g05580 Coffea canephora HOM05D002663 ORTHO05D002988 7.0e-20 100.9 120 50.0
Gohir.D01G023000 Gossypium hirsutum HOM05D002663 ORTHO05D002988 7.0e-20 100.9 95 57.9
MD16G1219600 Malus domestica HOM05D002663 ORTHO05D002988 7.0e-20 100.9 110 51.8
FAN12G2471 Fragaria x ananassa HOM05D002663 ORTHO05D002988 9.2e-20 100.5 84 65.5
FAN17G1274 Fragaria x ananassa HOM05D002663 ORTHO05D002988 9.2e-20 100.5 71 70.4
FAN22G0078 Fragaria x ananassa HOM05D002663 ORTHO05D002988 9.2e-20 100.5 71 70.4
Lj3A693T80 Lonicera japonica HOM05D002663 ORTHO05D002988 9.2e-20 100.5 68 67.6
Lj3A693T83 Lonicera japonica HOM05D002663 ORTHO05D002988 9.2e-20 100.5 68 67.6
Thecc.04G256100 Theobroma cacao HOM05D002663 ORTHO05D002988 9.2e-20 100.5 71 71.8
CANSAT78G1183 Cannabis sativa HOM05D002663 ORTHO05D002988 1.2e-19 100.1 82 61.0
Gohir.A01G024900 Gossypium hirsutum HOM05D002663 ORTHO05D002988 1.2e-19 100.1 96 58.3
Gohir.D01G023100 Gossypium hirsutum HOM05D002663 ORTHO05D002988 1.2e-19 100.1 95 57.9
Gorai.002G025500 Gossypium raimondii HOM05D002663 ORTHO05D002988 1.2e-19 100.1 95 57.9
Prupe.1G039700 Prunus persica HOM05D002663 ORTHO05D002988 1.6e-19 99.8 68 70.6
FvH4_4g03680 Fragaria vesca HOM05D002663 ORTHO05D002988 2.0e-19 99.4 84 65.5
Nitab4.5_0000302g0190 Nicotiana tabacum HOM05D002663 ORTHO05D002988 2.0e-19 99.4 70 68.6
Nn1g02781 Nelumbo nucifera HOM05D002663 ORTHO05D002988 2.7e-19 99.0 68 73.5
Sabra08G0127600 Salix brachista HOM05D000189 ORTHO05D000474 2.7e-19 99.0 70 65.7
Sed0019138 Sechium edule HOM05D002663 ORTHO05D002988 2.7e-19 99.0 70 64.3
Solyc06g053600.4 Solanum lycopersicum HOM05D002663 ORTHO05D002988 2.7e-19 99.0 69 69.6
Sopen06g018690 Solanum pennellii HOM05D002663 ORTHO05D002988 2.7e-19 99.0 69 69.6
Prupe.1G040000 Prunus persica HOM05D002663 ORTHO05D002988 3.5e-19 98.6 68 70.6
PGSC0003DMG400016293 Solanum tuberosum HOM05D002663 ORTHO05D002988 3.5e-19 98.6 69 69.6
GSVIVG01027820001 Vitis vinifera HOM05D002663 ORTHO05D002988 3.5e-19 98.6 103 56.3
DCAR_024256 Daucus carota HOM05D002663 ORTHO05D002988 4.6e-19 98.2 109 54.1
Dinv29857 Davidia involucrata HOM05D002663 ORTHO05D002988 6.0e-19 97.8 66 71.2
Peaxi162Scf00579g00048 Petunia axillaris HOM05D002663 ORTHO05D002988 7.8e-19 97.4 114 53.5
TAR362G0984 Trochodendron aralioides HOM05D002663 ORTHO05D002988 7.8e-19 97.4 98 57.1
CiPaw.01G184000 Carya illinoinensis HOM05D002663 ORTHO05D002988 1.0e-18 97.1 61 75.4
Hma1.2p1_0992F.1_g245210 Hydrangea macrophylla HOM05D002663 ORTHO05D002988 1.0e-18 97.1 70 68.6
Lj6g0014805 Lotus japonicus HOM05D002663 ORTHO05D002988 1.0e-18 97.1 61 77.0
GSVIVG01027822001 Vitis vinifera HOM05D002663 ORTHO05D002988 1.3e-18 96.7 64 73.4
Ciclev10005068m.g Citrus clementina HOM05D002663 ORTHO05D002988 1.7e-18 96.3 106 49.1
THA.LOC104801083 Tarenaya hassleriana HOM05D002663 ORTHO05D002988 1.7e-18 96.3 110 50.9
Haze_11388 Corylus avellana HOM05D002663 ORTHO05D002988 2.3e-18 95.9 61 73.8
Aqoxy2G03650 Aquilegia oxysepala HOM05D002663 ORTHO05D002988 3.0e-18 95.5 64 68.8
ClCG04G012670 Citrullus lanatus HOM05D002663 ORTHO05D002988 3.0e-18 95.5 68 69.1
Nitab4.5_0005627g0010 Nicotiana tabacum HOM05D002663 ORTHO05D002988 3.0e-18 95.5 68 67.6
ATR0736G162 Amborella trichopoda HOM05D002663 ORTHO05D002988 3.9e-18 95.1 68 67.6
arahy.Tifrunner.gnm1.ann1.3DH906 Arachis hypogaea HOM05D002663 ORTHO05D002988 3.9e-18 95.1 110 54.5
Sc13g0005480 Simmondsia chinensis HOM05D002663 ORTHO05D002988 3.9e-18 95.1 89 57.3
arahy.Tifrunner.gnm1.ann1.93JRWW Arachis hypogaea HOM05D002663 ORTHO05D002988 5.0e-18 94.7 108 51.9
Cpa.g.sc44.50 Carica papaya HOM05D002663 ORTHO05D002988 5.0e-18 94.7 117 49.6
Haze_11387 Corylus avellana HOM05D002663 ORTHO05D002988 5.0e-18 94.7 61 73.8
CsaV3_1G005010 Cucumis sativus L. HOM05D002663 ORTHO05D002988 5.0e-18 94.7 69 66.7
Os03g0611200 Oryza sativa ssp. japonica HOM05D002663 ORTHO05D002988 5.0e-18 94.7 73 60.3
PSO017G0007 Papaver somniferum HOM05D002663 ORTHO05D002988 5.0e-18 94.7 110 51.8
Atru.chr4.2054 Acer truncatum HOM05D002663 ORTHO05D002988 6.6e-18 94.4 61 73.8
MELO3C001939.2 Cucumis melo HOM05D002663 ORTHO05D002988 6.6e-18 94.4 64 67.2
Eucgr.H03041 Eucalyptus grandis HOM05D002663 ORTHO05D002988 6.6e-18 94.4 91 58.2
HanXRQChr03g0091441 Helianthus annuus HOM05D002663 ORTHO05D002988 6.6e-18 94.4 65 67.7
Cfa022963 Carpinus fangiana HOM05D002663 ORTHO05D002988 8.6e-18 94.0 61 72.1
Glyma.02G005200 Glycine max HOM05D002663 ORTHO05D002988 8.6e-18 94.0 63 71.4
Potri.008G167400 Populus trichocarpa HOM05D002663 ORTHO05D002988 1.1e-17 93.6 59 72.9
AUR62002140 Chenopodium quinoa HOM05D002663 ORTHO05D002988 1.5e-17 93.2 112 47.3
RcHm_v2.0_Chr4g0393291 Rosa chinensis HOM05D002663 ORTHO05D002988 1.5e-17 93.2 61 72.1
CARHR003760 Cardamine hirsuta HOM05D002663 ORTHO05D002988 1.9e-17 92.8 68 63.2
PGR004G1088 Punica granatum HOM05D002663 ORTHO05D002988 1.9e-17 92.8 70 64.3
TWI09G0632 Tripterygium wilfordii HOM05D002663 ORTHO05D002988 1.9e-17 92.8 118 50.0
EL10Ac3g05002 Beta vulgaris HOM05D002663 ORTHO05D002988 2.5e-17 92.4 72 62.5
PSO063G6804 Papaver somniferum HOM05D002663 ORTHO05D002988 2.5e-17 92.4 54 81.5
Phvul.007G274000 Phaseolus vulgaris HOM05D002663 ORTHO05D002988 2.5e-17 92.4 53 84.9
RcHm_v2.0_Chr4g0393301 Rosa chinensis HOM05D002663 ORTHO05D002988 2.5e-17 92.4 61 72.1
C05p02610 Brassica napus HOM05D002663 ORTHO05D002988 3.3e-17 92.0 98 50.0
Lalb_Chr19g0128191 Lupinus albus HOM05D002663 ORTHO05D002988 3.3e-17 92.0 55 78.2
TPR.G9376 Trifolium pratense HOM05D002663 ORTHO05D002988 3.3e-17 92.0 76 64.5
Actinidia39905 Actinidia chinensis HOM05D002663 ORTHO05D002988 4.3e-17 91.7 54 81.5
AT1G04420 Arabidopsis thaliana HOM05D002663 ORTHO05D002988 5.6e-17 91.3 61 67.2
Lsat_1_v5_gn_3_120601 Lactuca sativa HOM05D002663 ORTHO05D002988 5.6e-17 91.3 69 60.9
MBI07_g16927_MAGBIO Magnolia biondii HOM05D002663 ORTHO05D002988 5.6e-17 91.3 120 48.3
Psat6g104760 Pisum sativum HOM05D002663 ORTHO05D002988 5.6e-17 91.3 107 53.3
Carub.0001s0360 Capsella rubella HOM05D002663 ORTHO05D002988 7.3e-17 90.9 62 67.7
BcaC07g36908 Brassica carinata HOM05D002663 ORTHO05D002988 9.5e-17 90.5 98 50.0
Ca_12013_v3 Cicer arietinum L. HOM05D002663 ORTHO05D002988 9.5e-17 90.5 53 83.0
Medtr1g042730 Medicago truncatula HOM05D002663 ORTHO05D002988 9.5e-17 90.5 53 81.1
SEGI_32749 Sequoiadendron giganteum HOM05D002663 ORTHO05D002988 9.5e-17 90.5 58 72.4
vmacro15444 Vaccinium macrocarpon HOM05D002663 ORTHO05D002988 1.2e-16 90.1 54 77.8
Ah.04g155740 Amaranthus hybridus HOM05D002663 ORTHO05D002988 1.6e-16 89.7 59 69.5
AUR62015568 Chenopodium quinoa HOM05D002663 ORTHO05D002988 1.6e-16 89.7 72 61.1
Thhalv10007737m.g Eutrema salsugineum HOM05D002663 ORTHO05D002988 1.6e-16 89.7 61 67.2
HPP92_008955 Vanilla planifolia HOM05D002663 ORTHO05D002988 1.6e-16 89.7 56 76.8
AUR62002141 Chenopodium quinoa HOM05D002663 ORTHO05D002988 2.1e-16 89.4 109 50.5
ECA240G1813 Erigeron canadensis HOM05D001289 ORTHO05D002298 2.1e-16 89.4 60 70.0
RcHm_v2.0_Chr4g0393231 Rosa chinensis HOM05D002663 ORTHO05D002988 2.1e-16 89.4 87 57.5
TPR.G25174 Trifolium pratense HOM05D002663 ORTHO05D002988 2.1e-16 89.4 53 79.2
QL06p018104 Quercus lobata HOM05D002663 ORTHO05D002988 2.8e-16 89.0 61 70.5
A10p02860 Brassica napus HOM05D002663 ORTHO05D002988 4.7e-16 88.2 57 68.4
BraA10t42553Z Brassica rapa HOM05D002663 ORTHO05D002988 4.7e-16 88.2 57 68.4
Hund03041 Selenicereus undatus HOM05D002663 ORTHO05D002988 4.7e-16 88.2 111 44.1
VMungo0720G1673 Vigna mungo HOM05D002663 ORTHO05D002988 6.2e-16 87.8 51 80.4
Aa31LG1G20460 Aethionema arabicum HOM05D002663 ORTHO05D002988 8.1e-16 87.4 96 53.1
BolC5t29042H Brassica oleracea HOM05D002663 ORTHO05D002988 1.4e-15 86.7 98 49.0
Mapoly0053s0107 Marchantia polymorpha HOM05D002663 ORTHO05D002988 1.4e-15 86.7 55 69.1
Pp3c12_10890 Physcomitrium patens HOM05D002663 ORTHO05D002988 2.3e-15 85.9 68 60.3
BcaB08g35998 Brassica carinata HOM05D002663 ORTHO05D002988 5.2e-15 84.7 63 60.3
Zm00001eb051500 Zea mays HOM05D002663 ORTHO05D002988 5.2e-15 84.7 52 69.2
Zm00001eb113180 Zea mays HOM05D002663 ORTHO05D002988 5.2e-15 84.7 52 69.2
Sp1g03240 Schrenkiella parvula HOM05D002663 ORTHO05D002988 6.8e-15 84.3 51 74.5
Rhsim02G0037500 Rhododendron simsii HOM05D002663 ORTHO05D002988 2.0e-14 82.8 62 71.0
SMO134G0117 Selaginella moellendorffii HOM05D002663 ORTHO05D002988 3.4e-14 82.0 52 71.2
SMO274G0009 Selaginella moellendorffii HOM05D002663 ORTHO05D002988 1.1e-12 77.0 52 63.5
Cre10.g461900 Chlamydomonas reinhardtii HOM05D002663 ORTHO05D002988 2.1e-11 72.8 48 70.8
Zm00001eb007040 Zea mays HOM05D002663 ORTHO05D002988 1.7e-10 69.7 42 69.0
AUR62015567 Chenopodium quinoa HOM05D002663 ORTHO05D002988 1.5e-09 66.6 101 44.6
ECA240G4022 Erigeron canadensis HOM05D002663 ORTHO05D002988 1.5e-09 66.6 59 52.5
MD13G1214400 Malus domestica HOM05D002663 ORTHO05D002988 1.5e-09 66.6 58 60.3
Cre17.g699900 Chlamydomonas reinhardtii HOM05D002663 ORTHO05D002988 2.5e-09 65.9 53 54.7
Zm00001eb150350 Zea mays HOM05D002663 ORTHO05D002988 2.5e-09 65.9 42 64.3
MCO11G017 Micromonas commoda HOM05D002663 ORTHO05D002988 7.3e-09 64.3 50 62.0
Manes.03G163800 Manihot esculenta HOM05D002663 ORTHO05D002988 2.0e-06 56.2 32 78.1


User provided reference genes

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