Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow3G3821 Salvia bowleyana HOM05D004311 ORTHO05D005145 1.0e-307 1059.3 545 100.0
MSTRG.20570 Avicennia marina HOM05D004311 ORTHO05D005145 5.1e-134 482.3 558 51.8
SGA_v2.0_scaffold12G06156 Striga asiatica HOM05D004311 ORTHO05D005145 3.5e-127 459.5 578 49.8
Migut.G01038 Erythranthe guttata HOM05D004311 ORTHO05D005145 2.1e-119 433.7 567 49.2
unitig_8.g3035 Utricularia gibba HOM05D004311 ORTHO05D005145 2.2e-92 344.0 382 50.8
Actinidia35905 Actinidia chinensis HOM05D004311 ORTHO05D005145 5.5e-88 329.3 453 47.7
Cc03_g13030 Coffea canephora HOM05D004311 ORTHO05D005145 1.5e-85 321.2 415 48.0
Manes.11G116001 Manihot esculenta HOM05D004311 ORTHO05D005145 1.3e-84 318.2 414 49.3
GSVIVG01013563001 Vitis vinifera HOM05D004311 ORTHO05D005145 2.8e-84 317.0 479 45.5
CiPaw.01G102900 Carya illinoinensis HOM05D004311 ORTHO05D005145 1.8e-83 314.3 482 43.6
Gohir.A10G134400 Gossypium hirsutum HOM05D004311 ORTHO05D005145 4.5e-82 309.7 492 43.1
Lsat_1_v5_gn_6_54900 Lactuca sativa HOM05D004311 ORTHO05D005145 1.7e-81 307.8 431 46.2
Peaxi162Scf00319g00915 Petunia axillaris HOM05D004311 ORTHO05D005145 2.2e-81 307.4 452 43.1
TWI34G1341 Tripterygium wilfordii HOM05D004311 ORTHO05D005145 6.5e-81 305.8 524 43.1
Atru.chr5.2612 Acer truncatum HOM05D004311 ORTHO05D005145 2.5e-80 303.9 472 44.9
Duzib268G0197 Durio zibethinus HOM05D004311 ORTHO05D005145 4.2e-80 303.1 413 46.7
HanXRQChr07g0186701 Helianthus annuus HOM05D004311 ORTHO05D005145 5.5e-80 302.8 518 40.2
Potri.007G124150 Populus trichocarpa HOM05D004311 ORTHO05D005145 9.4e-80 302.0 485 43.5
Ciclev10019191m.g Citrus clementina HOM05D004311 ORTHO05D005145 1.2e-79 301.6 459 45.5
Sopen09g036480 Solanum pennellii HOM05D004311 ORTHO05D005145 2.7e-79 300.4 534 40.3
Gorai.011G145800 Gossypium raimondii HOM05D004311 ORTHO05D005145 3.6e-79 300.1 462 44.6
Thecc.04G184200 Theobroma cacao HOM05D004311 ORTHO05D005145 1.4e-78 298.1 460 45.2
Atru.chr3.1596 Acer truncatum HOM05D004311 ORTHO05D005145 2.3e-78 297.4 581 39.6
PGR083G0820 Punica granatum HOM05D004311 ORTHO05D005145 3.0e-78 297.0 420 45.0
Gohir.D10G132100 Gossypium hirsutum HOM05D004311 ORTHO05D005145 6.7e-78 295.8 462 44.4
Potri.017G036200 Populus trichocarpa HOM05D004311 ORTHO05D005145 6.7e-78 295.8 538 40.5
Solyc09g098560.2 Solanum lycopersicum HOM05D004311 ORTHO05D005145 2.6e-77 293.9 540 39.1
CAN.G710.65 Capsicum annuum HOM05D004311 ORTHO05D005145 7.4e-77 292.4 517 41.0
Cfa015780 Carpinus fangiana HOM05D004311 ORTHO05D005145 9.7e-77 292.0 476 41.8
Rhsim09G0031800 Rhododendron simsii HOM05D004311 ORTHO05D005145 4.8e-76 289.7 603 38.1
Sabra17G0023900 Salix brachista HOM05D004311 ORTHO05D005145 1.1e-75 288.5 581 37.0
Haze_00714 Corylus avellana HOM05D004311 ORTHO05D005145 1.4e-75 288.1 614 38.1
Eucgr.A00251 Eucalyptus grandis HOM05D004311 ORTHO05D005145 5.3e-75 286.2 425 46.6
Ca_11399_v3 Cicer arietinum L. HOM05D004311 ORTHO05D005145 4.5e-74 283.1 429 44.1
Ca_11402_v3 Cicer arietinum L. HOM05D004311 ORTHO05D005145 4.5e-74 283.1 429 44.1
Ca_29593_v3 Cicer arietinum L. HOM05D004311 ORTHO05D005145 4.5e-74 283.1 429 44.1
Dinv44218 Davidia involucrata HOM05D004311 ORTHO05D005145 4.5e-74 283.1 454 43.6
Nitab4.5_0006710g0020 Nicotiana tabacum HOM05D004311 ORTHO05D005145 4.5e-74 283.1 496 41.5
Sc19g0002150 Simmondsia chinensis HOM05D004311 ORTHO05D005145 5.9e-74 282.7 475 41.5
vmacro00589 Vaccinium macrocarpon HOM05D004311 ORTHO05D005145 7.7e-74 282.3 323 52.9
FAN17G0085 Fragaria x ananassa HOM05D004311 ORTHO05D005145 1.7e-73 281.2 505 40.0
FAN07G0445 Fragaria x ananassa HOM05D004311 ORTHO05D005145 2.2e-73 280.8 552 38.9
COL.COLO4_24387 Corchorus olitorius HOM05D004311 ORTHO05D005145 2.9e-73 280.4 284 58.1
FvH4_4g11290 Fragaria vesca HOM05D004311 ORTHO05D005145 2.9e-73 280.4 506 39.5
THA.LOC104821356 Tarenaya hassleriana HOM05D004311 ORTHO05D005145 1.4e-72 278.1 400 44.5
arahy.Tifrunner.gnm1.ann1.TTS68P Arachis hypogaea HOM05D004311 ORTHO05D005145 1.9e-72 277.7 442 43.4
CANSAT11G1749 Cannabis sativa HOM05D004311 ORTHO05D005145 3.2e-72 276.9 399 45.1
arahy.Tifrunner.gnm1.ann1.D3CYL9 Arachis hypogaea HOM05D004311 ORTHO05D005145 4.2e-72 276.6 442 43.2
Medtr1g116530 Medicago truncatula HOM05D004311 ORTHO05D005145 7.2e-72 275.8 391 45.5
Lj5g0018220 Lotus japonicus HOM05D004311 ORTHO05D005145 2.7e-71 273.9 390 44.6
Lalb_Chr21g0307601 Lupinus albus HOM05D004311 ORTHO05D005145 1.8e-70 271.2 391 45.3
Glyma.20G245800 Glycine max HOM05D004311 ORTHO05D005145 2.3e-70 270.8 395 44.6
TPR.G10413 Trifolium pratense HOM05D004311 ORTHO05D005145 8.8e-70 268.9 389 43.4
Lj6A60T46 Lonicera japonica HOM05D004311 ORTHO05D005145 1.1e-69 268.5 294 55.4
DCAR_028443 Daucus carota HOM05D004311 ORTHO05D005145 3.3e-69 266.9 509 37.9
MD04G1038300 Malus domestica HOM05D004311 ORTHO05D005145 1.3e-68 265.0 286 53.1
Nitab4.5_0000526g0040 Nicotiana tabacum HOM05D004311 ORTHO05D005145 1.4e-67 261.5 274 54.0
MBI08_g33649_MAGBIO Magnolia biondii HOM05D004311 ORTHO05D005145 4.1e-67 260.0 429 42.4
Glyma.10G295800 Glycine max HOM05D004311 ORTHO05D005145 9.1e-67 258.8 419 43.7
Psat6g241440 Pisum sativum HOM05D004311 ORTHO05D005145 9.1e-67 258.8 391 45.3
Phvul.007G004100 Phaseolus vulgaris HOM05D004311 ORTHO05D005145 1.2e-66 258.5 445 40.9
Hund12225 Selenicereus undatus HOM05D004311 ORTHO05D005145 2.6e-66 257.3 374 44.7
RcHm_v2.0_Chr4g0407531 Rosa chinensis HOM05D004311 ORTHO05D005145 4.5e-66 256.5 318 47.5
QL10p045440 Quercus lobata HOM05D004311 ORTHO05D005145 5.9e-66 256.1 780 31.0
Sed0012126 Sechium edule HOM05D004311 ORTHO05D005145 5.9e-66 256.1 431 41.8
VMungo0720G0448 Vigna mungo HOM05D004311 ORTHO05D005145 1.3e-65 255.0 425 41.9
MELO3C017696.2 Cucumis melo HOM05D004311 ORTHO05D005145 2.2e-65 254.2 390 44.1
Nn2g11494 Nelumbo nucifera HOM05D004311 ORTHO05D005145 5.0e-65 253.1 530 37.0
Actinidia33018 Actinidia chinensis HOM05D004311 ORTHO05D005145 7.2e-64 249.2 436 43.3
CDE02G0781 Ceratophyllum demersum HOM05D004311 ORTHO05D005145 4.7e-63 246.5 375 42.9
EL10Ac3g06308 Beta vulgaris HOM05D004311 ORTHO05D005145 8.0e-63 245.7 503 35.8
HPP92_009171 Vanilla planifolia HOM05D004311 ORTHO05D005145 8.8e-62 242.3 417 40.0
Dinv22688 Davidia involucrata HOM05D004311 ORTHO05D005145 1.2e-61 241.9 445 41.6
AUR62002610 Chenopodium quinoa HOM05D004311 ORTHO05D005145 1.5e-61 241.5 408 40.4
Sabra17G0023400 Salix brachista HOM05D004311 ORTHO05D005145 1.5e-61 241.5 325 45.2
CsaV3_4G003570 Cucumis sativus L. HOM05D004311 ORTHO05D005145 2.0e-61 241.1 429 41.0
TAR375G1135 Trochodendron aralioides HOM05D004311 ORTHO05D005145 2.0e-61 241.1 542 37.5
Oeu007717.1 Olea europaea HOM05D004311 ORTHO05D005145 4.4e-61 240.0 278 53.2
Aqoxy5G04052 Aquilegia oxysepala HOM05D004311 ORTHO05D005145 1.1e-59 235.3 544 36.6
SHI06503 Sapria himalayana HOM05D004311 ORTHO05D005145 1.1e-59 235.3 278 48.2
Aa31LG2G1780 Aethionema arabicum HOM05D004311 ORTHO05D005145 4.1e-59 233.4 427 38.6
Carub.0004s2496 Capsella rubella HOM05D004311 ORTHO05D005145 9.1e-59 232.3 395 40.3
AUR62030033 Chenopodium quinoa HOM05D004311 ORTHO05D005145 9.1e-59 232.3 563 34.1
ClCG07G015850 Citrullus lanatus HOM05D004311 ORTHO05D005145 1.2e-58 231.9 266 52.6
Nitab4.5_0004962g0030 Nicotiana tabacum HOM05D004311 ORTHO05D005145 1.2e-58 231.9 429 40.3
BcaNung03232 Brassica carinata HOM05D004311 ORTHO05D005145 4.5e-58 229.9 373 39.1
ATR0743G139 Amborella trichopoda HOM05D004311 ORTHO05D005145 8.5e-57 225.7 379 40.9
BcaC02g07234 Brassica carinata HOM05D004311 ORTHO05D005145 1.5e-56 224.9 411 38.2
CDE09G0340 Ceratophyllum demersum HOM05D004311 ORTHO05D005145 2.5e-56 224.2 530 34.9
Os11g0293300 Oryza sativa ssp. japonica HOM05D004311 ORTHO05D005145 6.1e-55 219.5 388 38.7
Sp4g24640 Schrenkiella parvula HOM05D004311 ORTHO05D005145 6.1e-55 219.5 461 35.8
C04p69770 Brassica napus HOM05D004311 ORTHO05D005145 1.0e-54 218.8 478 35.1
AT1G54380 Arabidopsis thaliana HOM05D004311 ORTHO05D005145 3.0e-54 217.2 454 36.3
CARHR055450 Cardamine hirsuta HOM05D004311 ORTHO05D005145 4.0e-54 216.9 496 36.9
BcaC02g12437 Brassica carinata HOM05D004311 ORTHO05D005145 6.8e-54 216.1 435 34.7
BraA05t19299Z Brassica rapa HOM05D004311 ORTHO05D005145 8.8e-54 215.7 446 36.1
A05p03080 Brassica napus HOM05D004311 ORTHO05D005145 1.5e-53 214.9 446 35.2
C04p03710 Brassica napus HOM05D004311 ORTHO05D005145 1.5e-53 214.9 440 34.1
Zm00001eb248350 Zea mays HOM05D004311 ORTHO05D005145 1.5e-53 214.9 389 38.3
BolC4t22005H Brassica oleracea HOM05D004311 ORTHO05D005145 2.0e-53 214.5 440 34.1
PSO675G5961 Papaver somniferum HOM05D004311 ORTHO05D005145 4.1e-51 206.8 408 37.0
Prupe.1G189100 Prunus persica HOM05D004311 ORTHO05D005145 9.1e-51 205.7 253 47.8
PSO017G7323 Papaver somniferum HOM05D004311 ORTHO05D005145 5.0e-49 199.9 412 36.4
FAN22G0235 Fragaria x ananassa HOM05D004311 ORTHO05D005820 1.9e-48 198.0 285 44.9
TWI60G0507 Tripterygium wilfordii HOM05D004311 ORTHO05D005145 5.2e-46 189.9 400 37.2
Cpa.g.sc73.18 Carica papaya HOM05D004311 ORTHO05D005145 1.1e-43 182.2 225 47.1
SEGI_09077 Sequoiadendron giganteum HOM05D004311 ORTHO05D005145 9.2e-43 179.1 297 40.7
SMO351G0426 Selaginella moellendorffii HOM05D004311 ORTHO05D005145 1.2e-39 168.7 264 39.4
SMO273G0052 Selaginella moellendorffii HOM05D004311 ORTHO05D005145 6.1e-39 166.4 258 40.7
Lalb_Chr02g0144311 Lupinus albus HOM05D004311 ORTHO05D005145 3.4e-37 160.6 251 41.0
AagrBONN_evm.TU.Sc2ySwM_228.1282 Anthoceros agrestis HOM05D004311 ORTHO05D005145 1.7e-36 158.3 535 29.3
Pp3c18_5230 Physcomitrium patens HOM05D004311 ORTHO05D005145 1.7e-36 158.3 462 29.7
SMO174G0256 Selaginella moellendorffii HOM05D004311 ORTHO05D005145 1.1e-35 155.6 276 36.2
CBR_g48670 Chara braunii HOM05D004311 ORTHO05D005145 3.2e-35 154.1 366 32.5
Haze_00722 Corylus avellana HOM05D001997 ORTHO05D004620 1.8e-30 138.3 130 57.7
BcaB06g29252 Brassica carinata HOM05D004311 ORTHO05D005145 1.2e-29 135.6 458 28.8
Thhalv10017985m.g Eutrema salsugineum HOM05D004311 ORTHO05D005145 1.5e-29 135.2 199 41.7
BcaNung05216 Brassica carinata HOM05D004311 ORTHO05D005145 1.7e-28 131.7 366 29.8
Nitab4.5_0001049g0080 Nicotiana tabacum HOM05D004311 ORTHO05D005145 4.0e-22 110.5 179 42.5
Mapoly0064s0042 Marchantia polymorpha HOM05D004311 ORTHO05D005145 6.8e-22 109.8 95 56.8
Duzib151G0942 Durio zibethinus HOM05D004311 ORTHO05D005145 8.9e-22 109.4 268 35.4
TWI60G1520 Tripterygium wilfordii HOM05D004311 ORTHO05D005145 2.6e-21 107.8 142 46.5
Prupe.1G188800 Prunus persica HOM05D004311 ORTHO05D005145 1.9e-19 101.7 250 34.0
MCO03G002 Micromonas commoda HOM05D004311 ORTHO05D005145 2.7e-18 97.8 268 31.0
MSTRG.21993 Avicennia marina HOM05D004311 ORTHO05D005145 5.2e-14 83.6 202 34.2
SGA_v2.0_scaffold290G47298 Striga asiatica HOM05D002786 ORTHO05D003493 6.8e-14 83.2 77 57.1
BcaNung00544 Brassica carinata HOM05D004311 ORTHO05D005145 1.1e-11 75.9 88 44.3
CSS0021437 Camellia sinensis var. sinensis HOM05D004311 ORTHO05D005145 4.2e-11 73.9 234 32.1
Lj6A60T47 Lonicera japonica HOM05D004311 ORTHO05D005145 1.0e-09 69.3 73 50.7
Oeu050349.1 Olea europaea HOM05D004311 ORTHO05D005145 1.0e-09 69.3 115 41.7
vmacro00590 Vaccinium macrocarpon HOM05D004311 ORTHO05D005145 1.1e-08 65.9 119 42.0
CARHR137590 Cardamine hirsuta HOM05D004311 ORTHO05D005145 3.3e-08 64.3 47 68.1
Cre09.g405650 Chlamydomonas reinhardtii HOM05D004311 ORTHO05D005145 3.6e-07 60.8 68 48.5
Hma1.2p1_0429F.1_g151120 Hydrangea macrophylla HOM05D004311 ORTHO05D005145 3.6e-07 60.8 106 40.6
Migut.N03111 Erythranthe guttata HOM05D004311 ORTHO05D005145 1.8e-06 58.5 173 31.8


User provided reference genes

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