Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow3G2575 Salvia bowleyana HOM05D006042 ORTHO05D007658 1.3e-157 559.7 286 100.0
SalBow3G3727 Salvia bowleyana HOM05D006042 ORTHO05D007658 1.3e-157 559.7 286 100.0
MSTRG.2747 Avicennia marina HOM05D006042 ORTHO05D007658 9.5e-100 367.5 303 69.0
Migut.H00201 Erythranthe guttata HOM05D006042 ORTHO05D007658 9.5e-100 367.5 300 69.7
Oeu030760.1 Olea europaea HOM05D006042 ORTHO05D007658 5.8e-97 358.2 292 69.5
CiPaw.03G059800 Carya illinoinensis HOM05D006042 ORTHO05D007658 2.1e-94 349.7 244 74.2
Nitab4.5_0004721g0010 Nicotiana tabacum HOM05D006042 ORTHO05D007658 3.5e-94 349.0 245 75.1
CSS0008868 Camellia sinensis var. sinensis HOM05D006042 ORTHO05D007658 4.6e-94 348.6 239 76.6
Nitab4.5_0002489g0020 Nicotiana tabacum HOM05D006042 ORTHO05D007658 6.0e-94 348.2 247 74.1
Hma1.2p1_0550F.1_g177265 Hydrangea macrophylla HOM05D006042 ORTHO05D007658 1.7e-93 346.7 222 80.2
CAN.G995.2 Capsicum annuum HOM05D006042 ORTHO05D007658 6.6e-93 344.7 243 74.1
Atru.chr8.825 Acer truncatum HOM05D006042 ORTHO05D007658 1.1e-92 344.0 245 73.5
GSVIVG01036442001 Vitis vinifera HOM05D006042 ORTHO05D007658 1.1e-92 344.0 273 68.9
PGSC0003DMG400019582 Solanum tuberosum HOM05D006042 ORTHO05D007658 1.9e-92 343.2 246 73.6
Cfa007944 Carpinus fangiana HOM05D006042 ORTHO05D007658 2.5e-92 342.8 222 79.3
Os08g0359000 Oryza sativa ssp. japonica HOM05D006042 ORTHO05D007658 2.5e-92 342.8 205 83.4
Prupe.3G239600 Prunus persica HOM05D006042 ORTHO05D007658 2.5e-92 342.8 252 73.4
Cc07_g09000 Coffea canephora HOM05D006042 ORTHO05D007658 3.3e-92 342.4 295 64.7
Manes.02G066700 Manihot esculenta HOM05D006042 ORTHO05D007658 5.6e-92 341.7 222 78.4
Lj2g0022623 Lotus japonicus HOM05D006042 ORTHO05D007658 1.2e-91 340.5 269 65.4
CANSAT64G1085 Cannabis sativa HOM05D006042 ORTHO05D007658 1.6e-91 340.1 232 75.0
QL02p052540 Quercus lobata HOM05D006042 ORTHO05D007658 1.6e-91 340.1 238 76.1
Zm00001eb042940 Zea mays HOM05D006042 ORTHO05D007658 1.6e-91 340.1 263 69.2
Solyc03g034170.4 Solanum lycopersicum HOM05D006042 ORTHO05D007658 2.1e-91 339.7 245 74.3
Aqoxy3G03922 Aquilegia oxysepala HOM05D006042 ORTHO05D007658 2.8e-91 339.3 242 72.7
Sopen03g006950 Solanum pennellii HOM05D006042 ORTHO05D007658 2.8e-91 339.3 244 73.4
PSO063G0034 Papaver somniferum HOM05D006042 ORTHO05D007658 4.7e-91 338.6 281 66.9
Actinidia26288 Actinidia chinensis HOM05D006042 ORTHO05D007658 8.1e-91 337.8 237 74.7
Eucgr.F02481 Eucalyptus grandis HOM05D006042 ORTHO05D007658 8.1e-91 337.8 223 76.7
PSO782G1563 Papaver somniferum HOM05D006042 ORTHO05D007658 1.4e-90 337.0 281 67.3
MD09G1084900 Malus domestica HOM05D006042 ORTHO05D007658 2.4e-90 336.3 238 73.9
ClCG11G005350 Citrullus lanatus HOM05D006042 ORTHO05D007658 3.1e-90 335.9 220 79.1
Ciclev10012434m.g Citrus clementina HOM05D006042 ORTHO05D007658 5.2e-90 335.1 223 77.1
MD17G1074400 Malus domestica HOM05D006042 ORTHO05D007658 8.9e-90 334.3 227 77.1
Carub.0007s3720 Capsella rubella HOM05D006042 ORTHO05D007658 2.0e-89 333.2 221 78.7
arahy.Tifrunner.gnm1.ann1.TWH6SW Arachis hypogaea HOM05D006042 ORTHO05D007658 3.4e-89 332.4 226 73.9
AL7G51880 Arabidopsis lyrata HOM05D006042 ORTHO05D007658 4.4e-89 332.0 222 77.9
Glyma.19G045600 Glycine max HOM05D006042 ORTHO05D007658 4.4e-89 332.0 210 78.1
Potri.004G102100 Populus trichocarpa HOM05D006042 ORTHO05D007658 4.4e-89 332.0 255 67.8
Ca_30067_v3 Cicer arietinum L. HOM05D006042 ORTHO05D007658 9.9e-89 330.9 281 64.1
CsaV3_5G039130 Cucumis sativus L. HOM05D006042 ORTHO05D007658 1.7e-88 330.1 237 73.8
PGR004G1523 Punica granatum HOM05D006042 ORTHO05D007658 1.7e-88 330.1 257 70.0
CARHR214100 Cardamine hirsuta HOM05D006042 ORTHO05D007658 2.2e-88 329.7 234 73.1
Thhalv10027870m.g Eutrema salsugineum HOM05D006042 ORTHO05D007658 2.2e-88 329.7 237 73.8
Sp1g29720 Schrenkiella parvula HOM05D006042 ORTHO05D007658 2.2e-88 329.7 230 73.5
ECA232G3341 Erigeron canadensis HOM05D006042 ORTHO05D007658 3.8e-88 328.9 226 74.8
BcaC08g44400 Brassica carinata HOM05D006042 ORTHO05D007658 4.9e-88 328.6 223 74.9
TPR.G32447 Trifolium pratense HOM05D006042 ORTHO05D007658 6.4e-88 328.2 271 65.3
MBI09_g41181_MAGBIO Magnolia biondii HOM05D006042 ORTHO05D007658 8.4e-88 327.8 303 62.4
Potri.017G112700 Populus trichocarpa HOM05D006042 ORTHO05D007658 8.4e-88 327.8 254 69.3
Lsat_1_v5_gn_4_153081 Lactuca sativa HOM05D006042 ORTHO05D007658 1.1e-87 327.4 247 70.4
Phvul.004G063000 Phaseolus vulgaris HOM05D006042 ORTHO05D007658 1.1e-87 327.4 272 65.4
C06p18330 Brassica napus HOM05D006042 ORTHO05D007658 1.9e-87 326.6 223 74.4
BolC6t37045H Brassica oleracea HOM05D006042 ORTHO05D007658 1.9e-87 326.6 223 74.4
BraA07t29682Z Brassica rapa HOM05D006042 ORTHO05D007658 2.4e-87 326.2 223 74.9
VMungo0464G1707 Vigna mungo HOM05D006042 ORTHO05D007658 3.2e-87 325.9 272 64.3
A07p19810 Brassica napus HOM05D006042 ORTHO05D007658 5.4e-87 325.1 223 74.4
FvH4_6g45340 Fragaria vesca HOM05D006042 ORTHO05D007658 5.4e-87 325.1 247 69.2
FAN14G4491 Fragaria x ananassa HOM05D006042 ORTHO05D007658 5.4e-87 325.1 247 69.2
Gohir.A11G162500 Gossypium hirsutum HOM05D006042 ORTHO05D007658 9.3e-87 324.3 247 68.4
THA.LOC104805550 Tarenaya hassleriana HOM05D006042 ORTHO05D007658 9.3e-87 324.3 256 68.4
BcaB02g07998 Brassica carinata HOM05D006042 ORTHO05D007658 1.2e-86 323.9 223 75.8
Duzib138G1312 Durio zibethinus HOM05D006042 ORTHO05D007658 1.2e-86 323.9 224 74.1
FAN09G0627 Fragaria x ananassa HOM05D006042 ORTHO05D007658 1.6e-86 323.6 274 65.0
ATR0589G121 Amborella trichopoda HOM05D006042 ORTHO05D007658 2.1e-86 323.2 249 71.1
Gorai.007G180300 Gossypium raimondii HOM05D006042 ORTHO05D007658 2.7e-86 322.8 222 73.9
TWI53G1226 Tripterygium wilfordii HOM05D006042 ORTHO05D007658 2.7e-86 322.8 222 73.9
FAN05G0122 Fragaria x ananassa HOM05D006042 ORTHO05D007658 3.5e-86 322.4 275 64.7
Gohir.D11G168732 Gossypium hirsutum HOM05D006042 ORTHO05D007658 3.5e-86 322.4 222 73.4
Thecc.04G137400 Theobroma cacao HOM05D006042 ORTHO05D007658 4.6e-86 322.0 224 73.7
Lalb_Chr06g0174661 Lupinus albus HOM05D006042 ORTHO05D007658 6.0e-86 321.6 276 62.7
HanXRQChr14g0438681 Helianthus annuus HOM05D006042 ORTHO05D007658 1.7e-85 320.1 225 72.9
Medtr6g017260 Medicago truncatula HOM05D006042 ORTHO05D007658 1.7e-85 320.1 279 63.1
Psat1g013000 Pisum sativum HOM05D006042 ORTHO05D007658 2.3e-85 319.7 283 62.5
DCAR_009854 Daucus carota HOM05D006042 ORTHO05D007658 5.1e-85 318.5 254 69.7
RcHm_v2.0_Chr2g0163121 Rosa chinensis HOM05D006042 ORTHO05D007658 6.6e-85 318.2 273 64.5
AT5G38660 Arabidopsis thaliana HOM05D006042 ORTHO05D007658 5.6e-84 315.1 208 77.9
Sc10g0001330 Simmondsia chinensis HOM05D006042 ORTHO05D007658 5.6e-84 315.1 276 61.2
COL.COLO4_16190 Corchorus olitorius HOM05D002377 ORTHO05D007658 1.6e-83 313.5 232 71.1
Hund16127 Selenicereus undatus HOM05D006042 ORTHO05D007658 6.2e-83 311.6 214 73.8
SGA_v2.0_scaffold49G18090 Striga asiatica HOM05D006042 ORTHO05D007658 3.1e-82 309.3 256 69.9
HPP92_008047 Vanilla planifolia HOM05D006042 ORTHO05D007658 2.6e-81 306.2 233 69.1
Sed0018352 Sechium edule HOM05D006042 ORTHO05D007658 4.4e-81 305.4 206 76.7
AUR62008965 Chenopodium quinoa HOM05D006042 ORTHO05D007658 1.3e-80 303.9 189 78.3
AUR62014538 Chenopodium quinoa HOM05D006042 ORTHO05D007658 1.7e-80 303.5 235 67.2
FAN02G0945 Fragaria x ananassa HOM05D006042 ORTHO05D007658 2.9e-80 302.8 275 62.5
vmacro18106 Vaccinium macrocarpon HOM05D006042 ORTHO05D007658 8.4e-80 301.2 176 87.5
SEGI_07967 Sequoiadendron giganteum HOM05D006042 ORTHO05D007658 1.4e-79 300.4 219 68.9
Rhsim08G0079500 Rhododendron simsii HOM05D006042 ORTHO05D007658 4.2e-79 298.9 322 57.5
Mapoly0019s0052 Marchantia polymorpha HOM05D006042 ORTHO05D007658 9.3e-79 297.7 260 59.6
Lj2C447G3 Lonicera japonica HOM05D006042 ORTHO05D007658 5.1e-77 292.0 210 71.9
arahy.Tifrunner.gnm1.ann1.4I03R9 Arachis hypogaea HOM05D006042 ORTHO05D007658 8.1e-75 284.6 220 65.9
Ca_26178_v3 Cicer arietinum L. HOM05D006042 ORTHO05D007658 2.0e-73 280.0 250 62.4
Aa31LG9G16960 Aethionema arabicum HOM05D006042 ORTHO05D007658 9.9e-73 277.7 221 67.9
Sabra04G0078300 Salix brachista HOM05D006042 ORTHO05D007658 3.8e-72 275.8 327 51.4
SMO232G0004 Selaginella moellendorffii HOM05D006042 ORTHO05D007658 8.4e-72 274.6 202 68.8
EL10Ac2g04605 Beta vulgaris HOM05D006042 ORTHO05D007658 1.1e-71 274.2 193 71.5
CBR_g44937 Chara braunii HOM05D006042 ORTHO05D007658 3.5e-70 269.2 206 64.1
AagrBONN_evm.TU.Sc2ySwM_340.223 Anthoceros agrestis HOM05D000513 ORTHO05D003825 2.3e-69 266.5 198 66.7
Pp3c4_3720 Physcomitrium patens HOM05D006042 ORTHO05D007658 3.3e-68 262.7 236 60.6
Nn3g17761 Nelumbo nucifera HOM05D006042 ORTHO05D007658 4.3e-68 262.3 251 62.2
CDE09G0042 Ceratophyllum demersum HOM05D006042 ORTHO05D007658 5.6e-68 261.9 234 62.4
Dinv34847 Davidia involucrata HOM05D006042 ORTHO05D007658 7.6e-65 251.5 259 59.5
Hma1.2p1_0550F.1_g177260 Hydrangea macrophylla HOM05D006042 ORTHO05D007658 7.6e-65 251.5 164 79.9
MELO3C022088.2 Cucumis melo HOM05D006042 ORTHO05D007658 7.2e-55 218.4 225 57.8
Peaxi162Scf00751g00624 Petunia axillaris HOM05D006042 ORTHO05D007658 3.7e-51 206.1 127 80.3
Cpa.g.sc179.22 Carica papaya HOM05D006042 ORTHO05D007658 3.8e-48 196.1 224 51.3
MBI09_g40289_MAGBIO Magnolia biondii HOM05D006042 ORTHO05D007658 3.8e-48 196.1 141 73.0
MCO16G088 Micromonas commoda HOM05D006042 ORTHO05D007658 3.2e-47 193.0 216 48.6
BcaC02g09662 Brassica carinata HOM05D006042 ORTHO05D007658 3.0e-45 186.4 224 53.6
PRCOL_00000779 Prasinoderma coloniale HOM05D006042 ORTHO05D007658 3.3e-44 183.0 223 45.7
Cre16.g665250 Chlamydomonas reinhardtii HOM05D006042 ORTHO05D007658 9.1e-42 174.9 203 47.8
TAR278G0002 Trochodendron aralioides HOM05D006042 ORTHO05D007658 7.2e-39 165.2 155 60.0
BolC3t18613H Brassica oleracea HOM05D006042 ORTHO05D032368 3.9e-37 159.5 103 76.7
GSVIVG01026074001 Vitis vinifera HOM05D006042 ORTHO05D007658 6.7e-37 158.7 127 67.7
BolC5t30891H Brassica oleracea HOM05D006042 ORTHO05D007658 2.6e-36 156.8 103 75.7
C04p45290 Brassica napus HOM05D006042 ORTHO05D007658 3.5e-33 146.4 278 40.3
BolC4t26112H Brassica oleracea HOM05D006042 ORTHO05D007658 1.7e-32 144.1 186 49.5
Haze_14131 Corylus avellana HOM05D006042 ORTHO05D007658 1.9e-31 140.6 118 66.1
unitig_0.g9 Utricularia gibba HOM05D006042 ORTHO05D007658 3.0e-29 133.3 86 75.6
Haze_14130 Corylus avellana HOM05D006042 ORTHO05D007658 2.2e-27 127.1 78 78.2
Cpa.g.sc179.23 Carica papaya HOM05D006042 ORTHO05D007658 2.8e-27 126.7 74 79.7
GSVIVG01027526001 Vitis vinifera HOM05D006042 ORTHO05D007658 1.1e-23 114.8 84 71.4
CARHR262580 Cardamine hirsuta HOM05D006042 ORTHO05D007658 7.0e-18 95.5 144 51.4
Sabra17G0093400 Salix brachista HOM05D006042 ORTHO05D007658 6.5e-16 89.0 84 59.5
Ah.16g101960 Amaranthus hybridus HOM05D000095 ORTHO05D000330 8.5e-16 88.6 52 76.9
QL02p057613 Quercus lobata HOM05D006042 ORTHO05D007658 2.1e-14 84.0 55 70.9
BcaC05g29172 Brassica carinata HOM05D006042 ORTHO05D032368 2.3e-13 80.5 56 69.6
C02p54890 Brassica napus HOM05D006042 ORTHO05D032368 3.0e-13 80.1 57 68.4
Phvul.004G063200 Phaseolus vulgaris HOM05D002377 ORTHO05D002656 3.7e-11 73.2 47 70.2
Phvul.004G063400 Phaseolus vulgaris HOM05D002377 ORTHO05D002656 3.7e-11 73.2 47 70.2
Peaxi162Scf00104g00074 Petunia axillaris HOM05D006042 ORTHO05D007658 4.1e-10 69.7 46 69.6
unitig_0.g10 Utricularia gibba HOM05D006042 ORTHO05D007658 2.9e-08 63.5 50 66.0
VMungo0464G0819 Vigna mungo HOM05D006042 ORTHO05D007658 4.3e-07 59.7 39 66.7


User provided reference genes

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