Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow3G3150 Salvia bowleyana HOM05D005215 ORTHO05D006382 3.2e-121 438.3 210 100.0
Migut.F00868 Erythranthe guttata HOM05D005215 ORTHO05D006382 1.4e-111 406.4 209 91.4
SGA_v2.0_scaffold329G48861 Striga asiatica HOM05D005215 ORTHO05D006382 2.3e-111 405.6 208 91.3
Migut.C00229 Erythranthe guttata HOM05D005215 ORTHO05D006382 3.0e-111 405.2 209 90.9
Migut.B01734 Erythranthe guttata HOM05D005215 ORTHO05D006382 7.5e-110 400.6 209 89.5
TWI15G0816 Tripterygium wilfordii HOM05D005215 ORTHO05D006382 6.3e-109 397.5 209 87.1
Cc02_g09580 Coffea canephora HOM05D005215 ORTHO05D006382 3.1e-108 395.2 208 88.5
Dinv11822 Davidia involucrata HOM05D005215 ORTHO05D006382 5.3e-108 394.4 209 86.1
PGR044G2198 Punica granatum HOM05D005215 ORTHO05D006382 5.3e-108 394.4 209 87.1
Atru.chr12.1046 Acer truncatum HOM05D005215 ORTHO05D006382 4.5e-107 391.3 209 86.1
MSTRG.27562 Avicennia marina HOM05D005215 ORTHO05D006382 1.7e-106 389.4 209 86.1
CAN.G1417.3 Capsicum annuum HOM05D005215 ORTHO05D006382 2.2e-106 389.0 210 85.2
Nitab4.5_0009484g0020 Nicotiana tabacum HOM05D005215 ORTHO05D006382 3.8e-106 388.3 210 85.7
QL04p046761 Quercus lobata HOM05D005215 ORTHO05D006382 8.5e-106 387.1 209 85.2
CiPaw.13G040900 Carya illinoinensis HOM05D005215 ORTHO05D006382 1.1e-105 386.7 209 87.1
Hma1.2p1_0756F.1_g213190 Hydrangea macrophylla HOM05D005215 ORTHO05D006382 1.1e-105 386.7 209 85.2
Actinidia34727 Actinidia chinensis HOM05D005215 ORTHO05D006382 1.5e-105 386.3 209 86.1
Ciclev10016681m.g Citrus clementina HOM05D005215 ORTHO05D006382 1.5e-105 386.3 209 84.7
Nitab4.5_0002586g0020 Nicotiana tabacum HOM05D005215 ORTHO05D006382 1.5e-105 386.3 210 85.7
Solyc11g006770.3 Solanum lycopersicum HOM05D005215 ORTHO05D006382 1.9e-105 386.0 210 85.2
PGSC0003DMG400023967 Solanum tuberosum HOM05D005215 ORTHO05D006382 1.9e-105 386.0 210 85.2
AUR62042083 Chenopodium quinoa HOM05D005215 ORTHO05D006382 4.2e-105 384.8 209 84.2
Peaxi162Scf00125g00233 Petunia axillaris HOM05D005215 ORTHO05D006382 4.2e-105 384.8 210 85.2
Sopen11g002700 Solanum pennellii HOM05D005215 ORTHO05D006382 1.6e-104 382.9 208 85.1
ClCG08G008310 Citrullus lanatus HOM05D005215 ORTHO05D006382 2.1e-104 382.5 208 85.1
MBI01_g04055_MAGBIO Magnolia biondii HOM05D005215 ORTHO05D006382 2.7e-104 382.1 209 83.3
EL10Ac4g07754 Beta vulgaris HOM05D005215 ORTHO05D006382 3.6e-104 381.7 209 83.3
arahy.Tifrunner.gnm1.ann1.E5H8ET Arachis hypogaea HOM05D005215 ORTHO05D006382 8.0e-104 380.6 208 85.1
Thecc.10G114600 Theobroma cacao HOM05D005215 ORTHO05D006382 8.0e-104 380.6 208 86.1
CiPaw.14G033600 Carya illinoinensis HOM05D005215 ORTHO05D006382 1.0e-103 380.2 209 86.1
CSS0033765 Camellia sinensis var. sinensis HOM05D005215 ORTHO05D006382 1.4e-103 379.8 209 84.7
Lsat_1_v5_gn_2_104201 Lactuca sativa HOM05D005215 ORTHO05D006382 1.4e-103 379.8 208 83.7
Manes.18G138580 Manihot esculenta HOM05D005215 ORTHO05D006382 1.4e-103 379.8 209 84.7
Nn6g34863 Nelumbo nucifera HOM05D005215 ORTHO05D006382 1.8e-103 379.4 208 84.1
TWI63G0161 Tripterygium wilfordii HOM05D005215 ORTHO05D006382 1.8e-103 379.4 208 83.2
CSS0044679 Camellia sinensis var. sinensis HOM05D005215 ORTHO05D006382 2.3e-103 379.0 209 86.1
vmacro07260 Vaccinium macrocarpon HOM05D005215 ORTHO05D006382 2.3e-103 379.0 207 86.0
Aqoxy4G02757 Aquilegia oxysepala HOM05D005215 ORTHO05D006382 3.0e-103 378.6 209 83.7
Potri.010G240000 Populus trichocarpa HOM05D005215 ORTHO05D006382 3.0e-103 378.6 209 84.2
Sc06g0002380 Simmondsia chinensis HOM05D005215 ORTHO05D006382 3.0e-103 378.6 210 83.8
Hund06789 Selenicereus undatus HOM05D005215 ORTHO05D006382 4.0e-103 378.3 209 83.7
Actinidia18624 Actinidia chinensis HOM05D005215 ORTHO05D006382 8.8e-103 377.1 198 88.4
GSVIVG01010684001 Vitis vinifera HOM05D005215 ORTHO05D006382 1.2e-102 376.7 202 85.6
Sed0008445 Sechium edule HOM05D005215 ORTHO05D006382 1.5e-102 376.3 208 84.1
Eucgr.J00268 Eucalyptus grandis HOM05D005215 ORTHO05D006382 2.0e-102 375.9 209 83.3
Lj5g0024589 Lotus japonicus HOM05D005215 ORTHO05D006382 4.4e-102 374.8 208 83.7
CDE06G1220 Ceratophyllum demersum HOM05D005215 ORTHO05D006382 1.3e-101 373.2 209 81.8
TAR623G0377 Trochodendron aralioides HOM05D005215 ORTHO05D006382 2.2e-101 372.5 209 81.8
TAR369G1081 Trochodendron aralioides HOM05D005215 ORTHO05D006382 8.3e-101 370.5 209 81.3
CDE08G0922 Ceratophyllum demersum HOM05D005215 ORTHO05D006382 1.1e-100 370.2 209 80.9
Duzib114G0243 Durio zibethinus HOM05D005215 ORTHO05D006382 1.1e-100 370.2 207 84.5
Gorai.009G303500 Gossypium raimondii HOM05D005215 ORTHO05D006382 1.8e-100 369.4 208 84.1
HanXRQChr11g0321671 Helianthus annuus HOM05D005215 ORTHO05D006382 3.1e-100 368.6 208 82.2
arahy.Tifrunner.gnm1.ann1.KL5LPC Arachis hypogaea HOM05D005215 ORTHO05D006382 4.1e-100 368.2 231 76.6
Potri.008G019200 Populus trichocarpa HOM05D005215 ORTHO05D006382 5.4e-100 367.9 208 81.7
Gohir.D05G288400 Gossypium hirsutum HOM05D005215 ORTHO05D006382 7.0e-100 367.5 208 83.7
Sabra08G0012600 Salix brachista HOM05D005215 ORTHO05D006382 7.0e-100 367.5 208 82.7
Gohir.A05G287300 Gossypium hirsutum HOM05D005215 ORTHO05D006382 1.2e-99 366.7 208 83.7
Prupe.2G069900 Prunus persica HOM05D005215 ORTHO05D006382 1.6e-99 366.3 209 81.3
Lsat_1_v5_gn_0_8140 Lactuca sativa HOM05D005215 ORTHO05D006382 2.0e-99 365.9 208 82.7
TPR.G2443 Trifolium pratense HOM05D005215 ORTHO05D006382 2.7e-99 365.5 208 80.8
AL4G36010 Arabidopsis lyrata HOM05D005215 ORTHO05D006382 3.5e-99 365.2 206 80.6
THA.LOC104801304 Tarenaya hassleriana HOM05D005215 ORTHO05D006382 4.5e-99 364.8 209 81.8
CARHR133400 Cardamine hirsuta HOM05D005215 ORTHO05D006382 7.7e-99 364.0 207 80.7
CANSAT56G3442 Cannabis sativa HOM05D005215 ORTHO05D006382 1.0e-98 363.6 209 80.4
MD02G1262000 Malus domestica HOM05D005215 ORTHO05D006382 1.0e-98 363.6 208 79.8
HanXRQChr07g0194041 Helianthus annuus HOM05D005215 ORTHO05D006382 1.3e-98 363.2 208 79.3
Oeu030225.2 Olea europaea HOM05D005215 ORTHO05D006382 1.3e-98 363.2 217 81.1
Psat0s1904g0160 Pisum sativum HOM05D005215 ORTHO05D006382 1.7e-98 362.8 208 80.3
ECA232G3141 Erigeron canadensis HOM05D005215 ORTHO05D006382 2.3e-98 362.5 208 81.2
AT2G38710 Arabidopsis thaliana HOM05D005215 ORTHO05D006382 2.9e-98 362.1 207 80.2
Sp4g21070 Schrenkiella parvula HOM05D005215 ORTHO05D006382 5.0e-98 361.3 206 79.6
Cpa.g.sc704.2 Carica papaya HOM05D005215 ORTHO05D006382 6.6e-98 360.9 193 86.0
Medtr1g111860 Medicago truncatula HOM05D005215 ORTHO05D006382 8.6e-98 360.5 208 80.3
PSO339G4522 Papaver somniferum HOM05D005215 ORTHO05D006382 8.6e-98 360.5 208 80.3
HPP92_020962 Vanilla planifolia HOM05D005215 ORTHO05D006382 8.6e-98 360.5 209 78.0
Carub.0004s2071 Capsella rubella HOM05D005215 ORTHO05D006382 1.1e-97 360.1 206 79.1
RcHm_v2.0_Chr7g0197741 Rosa chinensis HOM05D005215 ORTHO05D006382 3.3e-97 358.6 201 82.1
AUR62041518 Chenopodium quinoa HOM05D005215 ORTHO05D006382 4.2e-97 358.2 229 74.2
THA.LOC104811337 Tarenaya hassleriana HOM05D005215 ORTHO05D006382 5.5e-97 357.8 209 78.5
C03p25540 Brassica napus HOM05D005215 ORTHO05D006382 7.2e-97 357.5 208 79.3
BcaC02g07452 Brassica carinata HOM05D005215 ORTHO05D006382 9.5e-97 357.1 210 77.6
Thhalv10017213m.g Eutrema salsugineum HOM05D005215 ORTHO05D006382 9.5e-97 357.1 206 78.6
DCAR_006336 Daucus carota HOM05D005215 ORTHO05D006382 1.2e-96 356.7 202 81.2
ATR0776G030 Amborella trichopoda HOM05D005215 ORTHO05D006382 2.1e-96 355.9 208 80.3
BraA03t11391Z Brassica rapa HOM05D005215 ORTHO05D006382 2.1e-96 355.9 208 79.3
Sed0014754 Sechium edule HOM05D005215 ORTHO05D006382 2.1e-96 355.9 208 77.9
BolC3t14941H Brassica oleracea HOM05D005215 ORTHO05D006382 2.8e-96 355.5 208 78.8
PSO384G1677 Papaver somniferum HOM05D005215 ORTHO05D006382 4.7e-96 354.8 208 79.3
MD07G1058400 Malus domestica HOM05D005215 ORTHO05D006382 6.1e-96 354.4 207 78.7
Aa31LG5G21000 Aethionema arabicum HOM05D005215 ORTHO05D006382 8.0e-96 354.0 208 77.4
A03p21550 Brassica napus HOM05D005215 ORTHO05D006382 8.0e-96 354.0 208 78.8
FAN13G0513 Fragaria x ananassa HOM05D005215 ORTHO05D006382 8.0e-96 354.0 199 82.4
BraA04t18418Z Brassica rapa HOM05D005215 ORTHO05D006382 1.0e-95 353.6 210 76.7
FvH4_5g02370 Fragaria vesca HOM05D005215 ORTHO05D006382 2.3e-95 352.4 198 82.8
Glyma.20G074500 Glycine max HOM05D005215 ORTHO05D006382 2.3e-95 352.4 209 78.0
C04p66830 Brassica napus HOM05D005215 ORTHO05D006382 4.0e-95 351.7 210 76.2
BolC4t28184H Brassica oleracea HOM05D005215 ORTHO05D006382 5.2e-95 351.3 210 76.2
VMungo0720G2906 Vigna mungo HOM05D005215 ORTHO05D006382 5.2e-95 351.3 209 77.0
FAN18G1091 Fragaria x ananassa HOM05D005215 ORTHO05D006382 6.8e-95 350.9 198 82.3
FAN04G2904 Fragaria x ananassa HOM05D005215 ORTHO05D006382 8.9e-95 350.5 198 82.3
Phvul.007G235600 Phaseolus vulgaris HOM05D005215 ORTHO05D006382 8.9e-95 350.5 208 77.4
Glyma.10G123100 Glycine max HOM05D005215 ORTHO05D006382 2.0e-94 349.4 209 77.0
Oeu026607.3 Olea europaea HOM05D005215 ORTHO05D006382 2.0e-94 349.4 295 61.0
Os10g0573100 Oryza sativa ssp. japonica HOM05D005215 ORTHO05D006382 1.7e-93 346.3 207 77.3
SEGI_01358 Sequoiadendron giganteum HOM05D005215 ORTHO05D006382 2.2e-93 345.9 208 77.9
Zm00001eb390460 Zea mays HOM05D005215 ORTHO05D006382 1.6e-91 339.7 209 75.6
Haze_03299 Corylus avellana HOM05D005215 ORTHO05D006382 7.8e-91 337.4 249 68.7
PSO339G6572 Papaver somniferum HOM05D005215 ORTHO05D006382 8.6e-90 334.0 209 72.7
Pp3c3_21710 Physcomitrium patens HOM05D005215 ORTHO05D006382 2.5e-89 332.4 202 75.7
Mapoly0059s0056 Marchantia polymorpha HOM05D005215 ORTHO05D006382 5.6e-89 331.3 205 72.7
SMO331G0011 Selaginella moellendorffii HOM05D005215 ORTHO05D006382 5.6e-89 331.3 204 73.0
Ah.11g047220 Amaranthus hybridus HOM05D005215 ORTHO05D006382 1.2e-88 330.1 209 75.1
PSO801G0072 Papaver somniferum HOM05D005215 ORTHO05D006382 1.6e-88 329.7 209 71.8
Dinv10934 Davidia involucrata HOM05D005215 ORTHO05D006382 6.8e-87 324.3 166 88.0
AagrBONN_evm.TU.Sc2ySwM_117.3510 Anthoceros agrestis HOM05D005215 ORTHO05D006382 4.4e-86 321.6 201 71.6
Lj3A925G70 Lonicera japonica HOM05D005215 ORTHO05D006382 1.3e-85 320.1 174 87.4
FAN08G2650 Fragaria x ananassa HOM05D005215 ORTHO05D006382 1.3e-82 310.1 199 74.4
MELO3C019899.2 Cucumis melo HOM05D005215 ORTHO05D006382 2.5e-81 305.8 173 83.2
COL.COLO4_05151 Corchorus olitorius HOM05D005215 ORTHO05D006382 7.8e-75 284.3 424 42.5
Lalb_Chr02g0146211 Lupinus albus HOM05D005215 ORTHO05D006382 6.8e-71 271.2 145 82.8
Lalb_Chr06g0166341 Lupinus albus HOM05D005215 ORTHO05D006382 8.9e-71 270.8 145 82.8
Nn2g14190 Nelumbo nucifera HOM05D005215 ORTHO05D006382 4.1e-68 261.9 208 63.5
A04p29510 Brassica napus HOM05D005215 ORTHO05D006382 7.8e-67 257.7 145 77.2
Pp3c4_19060 Physcomitrium patens HOM05D005215 ORTHO05D006382 6.6e-66 254.6 171 70.8
CsaV3_6G004280 Cucumis sativus L. HOM05D005215 ORTHO05D006382 4.0e-55 218.8 113 85.8
CBR_g39962 Chara braunii HOM05D005215 ORTHO05D006382 9.9e-54 214.2 140 70.7
Cre03.g146687 Chlamydomonas reinhardtii HOM05D005215 ORTHO05D006382 2.5e-49 199.5 188 51.1
Ca_25655_v3 Cicer arietinum L. HOM05D000113 ORTHO05D001798 3.6e-48 195.7 125 72.8
Haze_26289 Corylus avellana HOM05D005215 ORTHO05D006382 6.9e-47 191.4 196 49.5
Potri.008G019325 Populus trichocarpa HOM05D005215 ORTHO05D006382 1.2e-46 190.7 109 82.6
unitig_88.g27810 Utricularia gibba HOM05D005215 ORTHO05D006382 9.6e-41 171.0 88 86.4
MCO01G395 Micromonas commoda HOM05D005215 ORTHO05D006382 6.2e-40 168.3 195 43.6
Sc06g0000010 Simmondsia chinensis HOM05D005215 ORTHO05D006382 1.8e-39 166.8 98 81.6
PRCOL_00005793 Prasinoderma coloniale HOM05D005215 ORTHO05D006382 1.1e-36 157.5 143 55.9
Dinv02216 Davidia involucrata HOM05D005215 ORTHO05D006382 3.5e-35 152.5 74 87.8
BcaNung04832 Brassica carinata HOM05D005215 ORTHO05D006382 1.1e-33 147.5 99 73.7
Cfa010328 Carpinus fangiana HOM05D005215 ORTHO05D006382 3.7e-32 142.5 79 86.1
unitig_88.g27811 Utricularia gibba HOM05D005215 ORTHO05D006382 1.1e-23 114.4 65 84.6
Lalb_Chr06g0166351 Lupinus albus HOM05D005215 ORTHO05D006382 5.5e-20 102.1 74 66.2
Sabra16G0322800 Salix brachista HOM05D005215 ORTHO05D006382 3.6e-19 99.4 72 68.1
Actinidia27053 Actinidia chinensis HOM05D005215 ORTHO05D006382 1.0e-18 97.8 60 80.0
Lalb_Chr02g0146221 Lupinus albus HOM05D005215 ORTHO05D006382 6.7e-18 95.1 63 73.0
Migut.F00867 Erythranthe guttata HOM05D012249 ORTHO05D014194 1.8e-10 70.5 35 88.6
Peaxi162Scf00959g00417 Petunia axillaris HOM05D005215 ORTHO05D306904 2.3e-10 70.1 60 65.0
Peaxi162Scf00959g00416 Petunia axillaris HOM05D005215 ORTHO05D006382 5.1e-10 68.9 40 77.5
GSVIVG01037606001 Vitis vinifera HOM05D005215 ORTHO05D014194 2.6e-09 66.6 35 77.1
THA.LOC104824416 Tarenaya hassleriana HOM05D006718 ORTHO05D008492 9.7e-09 64.7 32 90.6


User provided reference genes

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