Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow3G3143 Salvia bowleyana HOM05D004255 ORTHO05D004815 1.5e-157 560.5 436 100.0
SalBow2G0953 Salvia bowleyana HOM05D004255 ORTHO05D004815 4.5e-154 548.9 436 98.9
SalBow2G0603 Salvia bowleyana HOM05D004255 ORTHO05D004815 2.2e-153 546.6 436 98.6
DCAR_014992 Daucus carota HOM05D004255 ORTHO05D004815 2.0e-53 214.5 225 51.6
CSS0008426 Camellia sinensis var. sinensis HOM05D004255 ORTHO05D004815 1.3e-52 211.8 223 51.6
Migut.J00519 Erythranthe guttata HOM05D004255 ORTHO05D004815 3.8e-52 210.3 200 58.0
Peaxi162Scf00311g00013 Petunia axillaris HOM05D004255 ORTHO05D004815 6.5e-52 209.5 226 53.1
Oeu047722.1 Olea europaea HOM05D004255 ORTHO05D004815 1.9e-51 208.0 202 54.5
Cc06_g04130 Coffea canephora HOM05D004255 ORTHO05D004815 2.7e-50 204.1 208 51.9
Sopen10g033550 Solanum pennellii HOM05D004255 ORTHO05D004815 1.5e-48 198.4 225 51.1
Nitab4.5_0005518g0020 Nicotiana tabacum HOM05D004255 ORTHO05D004815 4.4e-48 196.8 225 48.9
CAN.G1169.8 Capsicum annuum HOM05D004255 ORTHO05D004815 1.3e-47 195.3 253 45.5
Dinv37304 Davidia involucrata HOM05D004255 ORTHO05D004815 4.8e-47 193.4 191 52.4
QL07p044001 Quercus lobata HOM05D004255 ORTHO05D004815 8.2e-47 192.6 227 47.6
CiPaw.09G173800 Carya illinoinensis HOM05D004255 ORTHO05D004815 1.6e-45 188.3 225 47.6
SGA_v2.0_scaffold75G24836 Striga asiatica HOM05D004255 ORTHO05D004815 4.5e-45 186.8 203 53.2
Manes.13G072800 Manihot esculenta HOM05D004255 ORTHO05D004815 5.9e-45 186.4 255 43.1
Solyc10g084090.3 Solanum lycopersicum HOM05D004255 ORTHO05D004815 7.2e-43 179.5 191 51.3
Nitab4.5_0001297g0100 Nicotiana tabacum HOM05D004255 ORTHO05D004815 1.2e-42 178.7 177 52.0
Rhsim02G0187700 Rhododendron simsii HOM05D004255 ORTHO05D004815 6.1e-42 176.4 208 48.6
Rhsim07G0183700 Rhododendron simsii HOM05D004255 ORTHO05D004815 8.0e-42 176.0 207 48.8
Lj4g0021155 Lotus japonicus HOM05D004255 ORTHO05D004815 1.3e-39 168.7 279 39.1
FAN14G1284 Fragaria x ananassa HOM05D004255 ORTHO05D004815 3.7e-39 167.2 247 39.3
Ah.08g211800 Amaranthus hybridus HOM05D004255 ORTHO05D004815 4.8e-39 166.8 288 36.8
Ciclev10011284m.g Citrus clementina HOM05D004255 ORTHO05D004815 6.3e-39 166.4 222 42.8
FvH4_6g16190 Fragaria vesca HOM05D004255 ORTHO05D004815 1.8e-38 164.9 237 40.5
FAN05G2535 Fragaria x ananassa HOM05D004255 ORTHO05D004815 5.3e-38 163.3 247 39.3
TAR633G2036 Trochodendron aralioides HOM05D004255 ORTHO05D004815 9.1e-38 162.5 250 42.8
Duzib106G1941 Durio zibethinus HOM05D004255 ORTHO05D004815 1.6e-37 161.8 225 40.9
Haze_22852 Corylus avellana HOM05D000010 ORTHO05D000302 3.5e-37 160.6 195 46.2
TAR633G1109 Trochodendron aralioides HOM05D004255 ORTHO05D004815 4.5e-37 160.2 207 47.3
Sc20g0005250 Simmondsia chinensis HOM05D004255 ORTHO05D004815 7.7e-37 159.5 224 42.0
Cfa017586 Carpinus fangiana HOM05D004255 ORTHO05D004815 1.0e-36 159.1 195 45.6
Gorai.006G165100 Gossypium raimondii HOM05D004255 ORTHO05D004815 3.8e-36 157.1 225 41.3
Gohir.D09G143800 Gossypium hirsutum HOM05D004255 ORTHO05D004815 1.9e-35 154.8 225 40.9
GSVIVG01025719001 Vitis vinifera HOM05D004255 ORTHO05D004815 9.4e-35 152.5 233 39.1
Thecc.09G346900 Theobroma cacao HOM05D004255 ORTHO05D004815 5.2e-33 146.7 228 39.5
Hund05968 Selenicereus undatus HOM05D004255 ORTHO05D004815 8.8e-33 146.0 184 44.0
Haze_20563 Corylus avellana HOM05D004255 ORTHO05D011583 2.0e-32 144.8 261 37.9
Duzib170G0445 Durio zibethinus HOM05D004255 ORTHO05D004815 3.4e-32 144.1 229 37.6
RcHm_v2.0_Chr3g0470041 Rosa chinensis HOM05D004255 ORTHO05D004815 3.4e-32 144.1 185 42.7
MELO3C009348.2 Cucumis melo HOM05D004255 ORTHO05D004815 5.7e-32 143.3 262 35.5
Glyma.19G000100 Glycine max HOM05D004255 ORTHO05D004815 5.7e-32 143.3 287 35.2
Potri.003G008900 Populus trichocarpa HOM05D004255 ORTHO05D004815 2.8e-31 141.0 196 42.3
TWI75G0856 Tripterygium wilfordii HOM05D004255 ORTHO05D004815 3.7e-31 140.6 228 37.7
VMungo0720G0391 Vigna mungo HOM05D004255 ORTHO05D004815 3.7e-31 140.6 294 34.7
Medtr1g045880 Medicago truncatula HOM05D004255 ORTHO05D004815 4.8e-31 140.2 274 35.4
Thecc.05G064100 Theobroma cacao HOM05D004255 ORTHO05D004815 4.8e-31 140.2 199 41.7
TPR.G23963 Trifolium pratense HOM05D004255 ORTHO05D004815 6.3e-31 139.8 283 35.3
Atru.chr8.1831 Acer truncatum HOM05D004255 ORTHO05D004815 1.1e-30 139.0 200 39.5
Phvul.007G232500 Phaseolus vulgaris HOM05D004255 ORTHO05D004815 1.4e-30 138.7 307 35.2
AUR62040455 Chenopodium quinoa HOM05D004255 ORTHO05D004815 1.8e-30 138.3 190 43.2
Atru.chr12.340 Acer truncatum HOM05D004255 ORTHO05D004815 5.4e-30 136.7 215 38.1
CANSAT80G1593 Cannabis sativa HOM05D004255 ORTHO05D004815 7.0e-30 136.3 177 41.8
EL10Ac7g16556 Beta vulgaris HOM05D004255 ORTHO05D004815 9.1e-30 136.0 182 41.8
Nn2g11560 Nelumbo nucifera HOM05D004255 ORTHO05D004815 9.1e-30 136.0 200 40.5
Duzib168G2269 Durio zibethinus HOM05D004255 ORTHO05D004815 1.6e-29 135.2 252 34.9
CsaV3_3G035890 Cucumis sativus L. HOM05D004255 ORTHO05D004815 2.0e-29 134.8 235 37.4
arahy.Tifrunner.gnm1.ann1.RBUQ0I Arachis hypogaea HOM05D004255 ORTHO05D004815 5.9e-29 133.3 264 34.8
Aa31LG5G4720 Aethionema arabicum HOM05D004255 ORTHO05D004815 1.7e-28 131.7 207 37.2
CANSAT54G2410 Cannabis sativa HOM05D004255 ORTHO05D004815 2.3e-28 131.3 234 33.8
HanXRQChr07g0206501 Helianthus annuus HOM05D004255 ORTHO05D004815 8.6e-28 129.4 225 37.3
Sopen10g033540 Solanum pennellii HOM05D004255 ORTHO05D004815 1.5e-27 128.6 162 42.6
Prupe.6G234000 Prunus persica HOM05D004255 ORTHO05D004815 1.9e-27 128.3 170 42.9
Cfa011366 Carpinus fangiana HOM05D004255 ORTHO05D004815 3.3e-27 127.5 228 36.4
Atru.chr12.311 Acer truncatum HOM05D004255 ORTHO05D004815 4.2e-27 127.1 199 38.7
AUR62041993 Chenopodium quinoa HOM05D004255 ORTHO05D004815 5.5e-27 126.7 148 47.3
Lsat_1_v5_gn_2_106641 Lactuca sativa HOM05D004255 ORTHO05D004815 7.2e-27 126.3 207 37.7
AL4G22170 Arabidopsis lyrata HOM05D004255 ORTHO05D004815 1.2e-26 125.6 246 31.7
PGR083G1347 Punica granatum HOM05D004255 ORTHO05D004815 1.2e-26 125.6 263 34.6
ClCG10G020210 Citrullus lanatus HOM05D004255 ORTHO05D004815 3.6e-26 124.0 187 39.6
Lsat_1_v5_gn_2_99540 Lactuca sativa HOM05D004255 ORTHO05D004815 6.1e-26 123.2 245 31.4
RcHm_v2.0_Chr5g0058011 Rosa chinensis HOM05D004255 ORTHO05D004815 8.0e-26 122.9 237 31.2
COL.COLO4_18281 Corchorus olitorius HOM05D004255 ORTHO05D004815 1.4e-25 122.1 195 38.5
Gorai.009G110100 Gossypium raimondii HOM05D004255 ORTHO05D004815 1.8e-25 121.7 211 36.5
CARHR004520 Cardamine hirsuta HOM05D004255 ORTHO05D004815 2.3e-25 121.3 208 34.6
Carub.0004s0880 Capsella rubella HOM05D004255 ORTHO05D004815 4.0e-25 120.6 239 30.5
FAN09G2699 Fragaria x ananassa HOM05D004255 ORTHO05D004815 5.2e-25 120.2 190 35.8
Hma1.2p1_0297F.1_g117010 Hydrangea macrophylla HOM05D004255 ORTHO05D004815 5.2e-25 120.2 212 34.9
AT2G28050 Arabidopsis thaliana HOM05D004255 ORTHO05D004815 6.8e-25 119.8 269 30.9
CARHR120730 Cardamine hirsuta HOM05D004255 ORTHO05D004815 6.8e-25 119.8 253 32.0
Gohir.A05G106000 Gossypium hirsutum HOM05D004255 ORTHO05D004815 8.9e-25 119.4 211 36.5
Aqoxy1G01172 Aquilegia oxysepala HOM05D004255 ORTHO05D004815 3.4e-24 117.5 176 40.9
Prupe.6G107000 Prunus persica HOM05D004255 ORTHO05D004815 4.4e-24 117.1 195 36.9
Lj1A198G34 Lonicera japonica HOM05D004255 ORTHO05D004815 1.7e-23 115.2 202 37.1
Cpa.g.sc65.27 Carica papaya HOM05D004255 ORTHO05D004815 3.7e-23 114.0 192 37.0
Thhalv10017786m.g Eutrema salsugineum HOM05D004255 ORTHO05D004815 1.1e-22 112.5 183 37.2
MD04G1094800 Malus domestica HOM05D004255 ORTHO05D004815 1.1e-22 112.5 178 39.9
Sp4g14950 Schrenkiella parvula HOM05D004255 ORTHO05D004815 1.1e-22 112.5 183 39.3
Rhsim04G0144500 Rhododendron simsii HOM05D004255 ORTHO05D004815 1.4e-22 112.1 130 45.4
AUR62022768 Chenopodium quinoa HOM05D004255 ORTHO05D004815 1.8e-22 111.7 237 31.2
Oeu034113.1 Olea europaea HOM05D004255 ORTHO05D004815 3.1e-22 110.9 210 34.8
Haze_23917 Corylus avellana HOM05D004255 ORTHO05D004815 4.1e-22 110.5 211 35.5
RcHm_v2.0_Chr5g0057961 Rosa chinensis HOM05D004255 ORTHO05D004815 4.1e-22 110.5 191 34.0
SHI12481 Sapria himalayana HOM05D004255 ORTHO05D004815 4.1e-22 110.5 192 33.9
PGSC0003DMG401010456 Solanum tuberosum HOM05D004255 ORTHO05D004815 4.1e-22 110.5 125 45.6
RcHm_v2.0_Chr5g0057911 Rosa chinensis HOM05D004255 ORTHO05D004815 5.4e-22 110.2 191 34.0
BcaC01g05901 Brassica carinata HOM05D004255 ORTHO05D004815 7.0e-22 109.8 165 39.4
BraA03t11081Z Brassica rapa HOM05D004255 ORTHO05D004815 7.0e-22 109.8 165 40.0
A03p18210 Brassica napus HOM05D004255 ORTHO05D004815 9.2e-22 109.4 165 40.0
Carub.0004s1396 Capsella rubella HOM05D004255 ORTHO05D004815 1.2e-21 109.0 188 35.6
CiPaw.14G077900 Carya illinoinensis HOM05D004255 ORTHO05D004815 1.2e-21 109.0 185 34.6
MBI19_g30280_MAGBIO Magnolia biondii HOM05D004255 ORTHO05D004815 1.6e-21 108.6 201 33.8
Manes.11G149500 Manihot esculenta HOM05D004255 ORTHO05D004815 1.6e-21 108.6 196 33.7
BolC3t14507H Brassica oleracea HOM05D004255 ORTHO05D004815 2.7e-21 107.8 165 39.4
TWI74G0375 Tripterygium wilfordii HOM05D004255 ORTHO05D004815 2.7e-21 107.8 165 38.8
Cc01_g10670 Coffea canephora HOM05D004255 ORTHO05D004815 3.5e-21 107.5 182 33.5
Thhalv10016624m.g Eutrema salsugineum HOM05D004255 ORTHO05D004815 3.5e-21 107.5 252 30.2
AT2G32630 Arabidopsis thaliana HOM05D004255 ORTHO05D004815 4.5e-21 107.1 178 37.6
C03p21260 Brassica napus HOM05D004255 ORTHO05D004815 5.9e-21 106.7 165 38.8
MD03G1124300 Malus domestica HOM05D004255 ORTHO05D004815 5.9e-21 106.7 162 39.5
BcaB01g03971 Brassica carinata HOM05D004255 ORTHO05D004815 8.6e-20 102.8 167 38.3
QL01p037114 Quercus lobata HOM05D004255 ORTHO05D004815 8.6e-20 102.8 198 36.4
Nitab4.5_0001297g0090 Nicotiana tabacum HOM05D004255 ORTHO05D004815 1.9e-19 101.7 135 43.7
THA.LOC104816036 Tarenaya hassleriana HOM05D004255 ORTHO05D004815 2.5e-19 101.3 174 36.2
PGSC0003DMG400010458 Solanum tuberosum HOM05D004255 ORTHO05D004815 4.3e-19 100.5 78 61.5
Sc15g0001630 Simmondsia chinensis HOM05D004255 ORTHO05D004815 5.6e-19 100.1 207 33.8
BcaB02g10133 Brassica carinata HOM05D004255 ORTHO05D004815 1.2e-18 99.0 275 29.5
Sp4g10830 Schrenkiella parvula HOM05D004255 ORTHO05D004815 1.2e-18 99.0 246 27.6
CARHR126490 Cardamine hirsuta HOM05D004255 ORTHO05D004815 4.7e-18 97.1 175 34.9
TAR633G0618 Trochodendron aralioides HOM05D004255 ORTHO05D004815 6.1e-18 96.7 116 46.6
Sopen06g005230 Solanum pennellii HOM05D004255 ORTHO05D004815 1.0e-17 95.9 180 32.8
Solyc06g010275.1 Solanum lycopersicum HOM05D004255 ORTHO05D004815 5.2e-17 93.6 202 31.2
PSO063G1866 Papaver somniferum HOM05D004255 ORTHO05D004815 1.5e-16 92.0 250 31.2
PGR102G0358 Punica granatum HOM05D004255 ORTHO05D004815 3.4e-16 90.9 213 31.0
HanXRQChr09g0259341 Helianthus annuus HOM05D004255 ORTHO05D004815 4.9e-15 87.0 195 29.7
Aa31LG5G8100 Aethionema arabicum HOM05D004255 ORTHO05D004815 1.1e-14 85.9 217 25.8
PSO339G5596 Papaver somniferum HOM05D004255 ORTHO05D004815 1.4e-14 85.5 227 30.0
Eucgr.K03591 Eucalyptus grandis HOM05D004255 ORTHO05D004815 3.2e-14 84.3 115 40.0
Solyc06g010270.1 Solanum lycopersicum HOM05D004255 ORTHO05D004815 3.2e-14 84.3 254 26.8
PGSC0003DMG400015738 Solanum tuberosum HOM05D004255 ORTHO05D004815 4.1e-14 84.0 208 29.3
Sed0023037 Sechium edule HOM05D004255 ORTHO05D004815 7.0e-14 83.2 163 31.9
QL09p049934 Quercus lobata HOM05D004255 ORTHO05D004815 2.0e-13 81.6 126 38.9
CDE02G3824 Ceratophyllum demersum HOM05D004255 ORTHO05D004815 6.0e-13 80.1 221 29.4
Ah.01g003110 Amaranthus hybridus HOM05D004255 ORTHO05D004815 2.3e-12 78.2 204 27.0
COL.COLO4_30932 Corchorus olitorius HOM05D000090 ORTHO05D004815 2.3e-12 78.2 121 36.4
Atru.chr8.977 Acer truncatum HOM05D004255 ORTHO05D004815 8.6e-12 76.3 88 44.3
ClCG02G021360 Citrullus lanatus HOM05D004255 ORTHO05D004815 1.5e-11 75.5 123 35.8
FAN02G2222 Fragaria x ananassa HOM05D004255 ORTHO05D004815 1.5e-11 75.5 96 43.8
Lj2P116T30 Lonicera japonica HOM05D004255 ORTHO05D004815 3.3e-11 74.3 52 65.4
ECA238G3169 Erigeron canadensis HOM05D004255 ORTHO05D004815 4.3e-11 73.9 92 42.4
Gohir.D05G106066 Gossypium hirsutum HOM05D004255 ORTHO05D004815 4.3e-11 73.9 159 34.0
RcHm_v2.0_Chr5g0058061 Rosa chinensis HOM05D004255 ORTHO05D004815 9.5e-11 72.8 134 39.6
Atru.chr13.2607 Acer truncatum HOM05D004255 ORTHO05D004815 3.6e-10 70.9 87 39.1
Glyma.20G081700 Glycine max HOM05D004255 ORTHO05D004815 8.9e-09 66.2 192 30.2
Ca_11878_v3 Cicer arietinum L. HOM05D004255 ORTHO05D004815 2.6e-08 64.7 171 30.4
BraA07t29569Z Brassica rapa HOM05D004255 ORTHO05D004815 3.4e-08 64.3 173 31.8
AL4G28030 Arabidopsis lyrata HOM05D004255 ORTHO05D004815 7.5e-08 63.2 58 50.0
Sabra03G0004500 Salix brachista HOM05D004255 ORTHO05D004815 6.4e-07 60.1 125 31.2
HPP92_026817 Vanilla planifolia HOM05D004255 ORTHO05D004815 1.9e-06 58.5 138 29.7
A06p06540 Brassica napus HOM05D006888 ORTHO05D008371 2.4e-06 58.2 195 25.1
BolC5t29545H Brassica oleracea HOM05D006888 ORTHO05D008371 2.4e-06 58.2 198 24.2
BcaC05g24842 Brassica carinata HOM05D006888 ORTHO05D008371 3.2e-06 57.8 183 25.1
C05p07930 Brassica napus HOM05D006888 ORTHO05D008371 5.4e-06 57.0 198 23.7
AL1G20420 Arabidopsis lyrata HOM05D006888 ORTHO05D008371 9.2e-06 56.2 189 22.8


User provided reference genes

Program Settings