Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow3G2368 Salvia bowleyana HOM05D004796 ORTHO05D006527 1.6e-186 656.0 337 100.0
SalBow3G3135 Salvia bowleyana HOM05D004796 ORTHO05D006527 1.6e-186 656.0 337 100.0
SalBow3G1292 Salvia bowleyana HOM05D004796 ORTHO05D006527 4.6e-186 654.4 337 99.4
MSTRG.23646 Avicennia marina HOM05D004796 ORTHO05D006527 1.8e-153 546.2 457 66.1
SGA_v2.0_scaffold121G33084 Striga asiatica HOM05D004796 ORTHO05D006527 1.4e-150 536.6 457 65.6
SGA_v2.0_scaffold269G46256 Striga asiatica HOM05D004796 ORTHO05D006527 2.2e-148 529.3 458 64.4
Oeu014312.1 Olea europaea HOM05D004796 ORTHO05D006527 7.9e-146 520.8 461 62.5
Cc07_g07590 Coffea canephora HOM05D004796 ORTHO05D006527 4.4e-144 515.0 456 63.2
Nitab4.5_0006325g0030 Nicotiana tabacum HOM05D004796 ORTHO05D006527 7.4e-144 514.2 456 61.8
PGSC0003DMG400030629 Solanum tuberosum HOM05D004796 ORTHO05D006527 9.7e-144 513.8 456 61.4
Sopen02g036470 Solanum pennellii HOM05D004796 ORTHO05D006527 1.7e-143 513.1 456 61.8
CAN.G1061.4 Capsicum annuum HOM05D004796 ORTHO05D006527 2.8e-143 512.3 456 61.6
COL.COLO4_11645 Corchorus olitorius HOM05D004796 ORTHO05D006527 1.8e-142 509.6 411 68.1
Aa31LG1G16340 Aethionema arabicum HOM05D004796 ORTHO05D006527 4.2e-139 498.4 463 59.8
Sed0020912 Sechium edule HOM05D004796 ORTHO05D006527 5.5e-139 498.0 460 60.4
Lalb_Chr09g0323791 Lupinus albus HOM05D004796 ORTHO05D006527 2.1e-138 496.1 455 60.7
MELO3C007668.2 Cucumis melo HOM05D004796 ORTHO05D006527 3.6e-138 495.4 458 60.9
Eucgr.I00651 Eucalyptus grandis HOM05D004796 ORTHO05D006527 6.1e-138 494.6 455 60.7
MD15G1303800 Malus domestica HOM05D004796 ORTHO05D006527 8.0e-138 494.2 455 61.1
ClCG01G017940 Citrullus lanatus HOM05D004796 ORTHO05D006527 1.0e-137 493.8 456 60.7
HanXRQChr14g0447651 Helianthus annuus HOM05D004796 ORTHO05D006527 1.0e-137 493.8 457 60.6
TWI63G0151 Tripterygium wilfordii HOM05D004796 ORTHO05D006527 1.8e-137 493.0 458 60.7
PGR004G2229 Punica granatum HOM05D004796 ORTHO05D006527 6.7e-137 491.1 459 60.8
Hma1.2p1_0477F.1_g160960 Hydrangea macrophylla HOM05D004796 ORTHO05D006527 1.1e-136 490.3 455 60.4
Lalb_Chr16g0379061 Lupinus albus HOM05D004796 ORTHO05D006527 1.1e-136 490.3 456 60.3
Psat2g172800 Pisum sativum HOM05D004796 ORTHO05D006527 1.1e-136 490.3 458 60.0
Hma1.2p1_1953F.1_g308840 Hydrangea macrophylla HOM05D004796 ORTHO05D006527 1.5e-136 490.0 455 60.2
Hma1.2p1_0424F.1_g150270 Hydrangea macrophylla HOM05D004796 ORTHO05D006527 3.3e-136 488.8 456 59.6
RcHm_v2.0_Chr2g0109391 Rosa chinensis HOM05D004796 ORTHO05D006527 3.3e-136 488.8 459 60.6
Thecc.01G079500 Theobroma cacao HOM05D004796 ORTHO05D006527 3.3e-136 488.8 441 61.7
Haze_03962 Corylus avellana HOM05D004796 ORTHO05D006527 4.4e-136 488.4 466 60.1
DCAR_010778 Daucus carota HOM05D004796 ORTHO05D006527 4.4e-136 488.4 457 60.4
Gohir.A05G255700 Gossypium hirsutum HOM05D004796 ORTHO05D006527 4.4e-136 488.4 456 60.5
Gohir.D05G257400 Gossypium hirsutum HOM05D004796 ORTHO05D006527 5.7e-136 488.0 456 60.5
Gorai.009G268800 Gossypium raimondii HOM05D004796 ORTHO05D006527 5.7e-136 488.0 456 60.5
Lj2C425T5 Lonicera japonica HOM05D004796 ORTHO05D006527 5.7e-136 488.0 459 60.3
Duzib187G1710 Durio zibethinus HOM05D004796 ORTHO05D006527 7.4e-136 487.6 456 60.7
Potri.007G000600 Populus trichocarpa HOM05D004796 ORTHO05D006527 7.4e-136 487.6 454 60.6
QL06p038221 Quercus lobata HOM05D004796 ORTHO05D006527 9.7e-136 487.3 456 59.4
Duzib147G0087 Durio zibethinus HOM05D004796 ORTHO05D006527 2.2e-135 486.1 456 60.5
Medtr5g014820 Medicago truncatula HOM05D004796 ORTHO05D006527 2.2e-135 486.1 457 59.1
CSS0047287 Camellia sinensis var. sinensis HOM05D004796 ORTHO05D006527 2.8e-135 485.7 458 60.5
Cfa006794 Carpinus fangiana HOM05D004796 ORTHO05D006527 3.7e-135 485.3 417 63.5
THA.LOC104798404 Tarenaya hassleriana HOM05D004796 ORTHO05D006527 3.7e-135 485.3 457 59.7
TPR.G28859 Trifolium pratense HOM05D004796 ORTHO05D006527 3.7e-135 485.3 461 59.4
Sc07g0000270 Simmondsia chinensis HOM05D004796 ORTHO05D006527 4.8e-135 485.0 444 61.5
TAR628G0926 Trochodendron aralioides HOM05D004796 ORTHO05D006527 1.1e-134 483.8 433 61.9
arahy.Tifrunner.gnm1.ann1.P6WLKW Arachis hypogaea HOM05D004796 ORTHO05D006527 1.4e-134 483.4 459 59.0
arahy.Tifrunner.gnm1.ann1.R82CC3 Arachis hypogaea HOM05D004796 ORTHO05D006527 1.4e-134 483.4 459 59.0
Cpa.g.sc129.49 Carica papaya HOM05D004796 ORTHO05D006527 1.4e-134 483.4 455 60.4
CSS0039666 Camellia sinensis var. sinensis HOM05D004796 ORTHO05D006527 1.8e-134 483.0 458 60.3
Prupe.6G213300 Prunus persica HOM05D004796 ORTHO05D006527 1.8e-134 483.0 458 60.0
Nn5g30704 Nelumbo nucifera HOM05D004796 ORTHO05D006527 3.1e-134 482.3 464 59.9
Gohir.D12G078300 Gossypium hirsutum HOM05D004796 ORTHO05D006527 7.0e-134 481.1 456 60.1
ECA234G3987 Erigeron canadensis HOM05D004796 ORTHO05D006527 1.2e-133 480.3 458 60.3
PSO170G1369 Papaver somniferum HOM05D004796 ORTHO05D006527 1.6e-133 479.9 458 58.7
FvH4_1g18610 Fragaria vesca HOM05D004796 ORTHO05D006527 2.0e-133 479.6 455 59.3
Aqoxy6G02400 Aquilegia oxysepala HOM05D004796 ORTHO05D006527 3.5e-133 478.8 441 60.1
Gohir.A12G081500 Gossypium hirsutum HOM05D004796 ORTHO05D006527 4.5e-133 478.4 456 59.4
PSO063G7095 Papaver somniferum HOM05D004796 ORTHO05D006527 1.0e-132 477.2 454 58.6
Atru.chr3.1085 Acer truncatum HOM05D004796 ORTHO05D006527 1.3e-132 476.9 461 57.0
Ca_24663_v3 Cicer arietinum L. HOM05D004796 ORTHO05D006527 1.7e-132 476.5 458 59.0
FAN26G2906 Fragaria x ananassa HOM05D004796 ORTHO05D006527 2.2e-132 476.1 455 59.6
Lsat_1_v5_gn_2_81541 Lactuca sativa HOM05D004796 ORTHO05D006527 2.2e-132 476.1 451 59.6
Manes.12G119000 Manihot esculenta HOM05D004796 ORTHO05D006527 2.9e-132 475.7 460 59.1
PSO782G2535 Papaver somniferum HOM05D004796 ORTHO05D006527 2.9e-132 475.7 455 58.0
Aqoxy5G00233 Aquilegia oxysepala HOM05D004796 ORTHO05D006527 5.0e-132 474.9 434 60.4
CANSAT01G0390 Cannabis sativa HOM05D004796 ORTHO05D006527 5.0e-132 474.9 459 58.8
CiPaw.07G039300 Carya illinoinensis HOM05D004796 ORTHO05D006527 5.0e-132 474.9 467 58.5
CAN.G529.24 Capsicum annuum HOM05D004796 ORTHO05D006527 1.1e-131 473.8 410 62.4
Sabra08G0002600 Salix brachista HOM05D004796 ORTHO05D006527 1.1e-131 473.8 456 58.3
Nn4g24745 Nelumbo nucifera HOM05D004796 ORTHO05D006527 1.5e-131 473.4 414 62.8
Lj2g0010705 Lotus japonicus HOM05D004796 ORTHO05D006527 1.9e-131 473.0 459 57.3
AUR62007967 Chenopodium quinoa HOM05D004796 ORTHO05D006527 3.2e-131 472.2 457 58.4
FAN23G2833 Fragaria x ananassa HOM05D004796 ORTHO05D006527 3.2e-131 472.2 455 59.1
MBI11_g39360_MAGBIO Magnolia biondii HOM05D004796 ORTHO05D006527 3.2e-131 472.2 455 57.8
Glyma.11G044600 Glycine max HOM05D004796 ORTHO05D006527 5.5e-131 471.5 460 58.7
PSO210G2597 Papaver somniferum HOM05D004796 ORTHO05D006527 1.6e-130 469.9 459 57.7
ATR1120G045 Amborella trichopoda HOM05D004796 ORTHO05D006527 2.7e-130 469.2 463 57.2
FAN28G1552 Fragaria x ananassa HOM05D004796 ORTHO05D006527 2.7e-130 469.2 455 58.5
Glyma.01G197100 Glycine max HOM05D004796 ORTHO05D006527 2.7e-130 469.2 460 58.3
Ciclev10025572m.g Citrus clementina HOM05D004796 ORTHO05D006527 6.1e-130 468.0 458 56.1
Sabra07G0000600 Salix brachista HOM05D004796 ORTHO05D006527 1.0e-129 467.2 401 64.8
Phvul.002G008200 Phaseolus vulgaris HOM05D004796 ORTHO05D006527 1.8e-129 466.5 458 57.6
VMungo1215G0536 Vigna mungo HOM05D004796 ORTHO05D006527 3.0e-129 465.7 457 57.8
Ah.03g139580 Amaranthus hybridus HOM05D004796 ORTHO05D006527 2.0e-128 463.0 460 57.2
Dinv23067 Davidia involucrata HOM05D004796 ORTHO05D006527 2.6e-128 462.6 444 59.7
HPP92_019516 Vanilla planifolia HOM05D004796 ORTHO05D006527 3.4e-128 462.2 467 56.7
Gorai.008G087200 Gossypium raimondii HOM05D004796 ORTHO05D006527 7.0e-126 454.5 440 59.5
Actinidia36405 Actinidia chinensis HOM05D004796 ORTHO05D006527 9.1e-126 454.1 405 62.0
HanXRQChr14g0461401 Helianthus annuus HOM05D004796 ORTHO05D006527 1.2e-125 453.8 455 55.8
Sp2g28820 Schrenkiella parvula HOM05D004796 ORTHO05D006527 1.2e-125 453.8 461 55.7
AT5G65720 Arabidopsis thaliana HOM05D004796 ORTHO05D006527 3.5e-125 452.2 455 56.0
Solyc02g091900.4 Solanum lycopersicum HOM05D004796 ORTHO05D006527 2.2e-124 449.5 344 69.2
BcaB04g20026 Brassica carinata HOM05D004796 ORTHO05D006527 8.5e-124 447.6 457 55.6
A09p09140 Brassica napus HOM05D004796 ORTHO05D006527 1.1e-123 447.2 458 55.2
Zm00001eb310290 Zea mays HOM05D004796 ORTHO05D006527 1.1e-123 447.2 453 54.7
CARHR279720 Cardamine hirsuta HOM05D004796 ORTHO05D006527 1.5e-123 446.8 463 55.9
BolC9t53963H Brassica oleracea HOM05D004796 ORTHO05D006527 1.9e-123 446.4 457 55.4
BraA09t36565Z Brassica rapa HOM05D004796 ORTHO05D006527 2.5e-123 446.0 458 55.2
CDE02G1131 Ceratophyllum demersum HOM05D004796 ORTHO05D006527 2.5e-123 446.0 417 57.3
SEGI_09827 Sequoiadendron giganteum HOM05D004796 ORTHO05D006527 3.2e-123 445.7 446 55.4
AL8G43440 Arabidopsis lyrata HOM05D004796 ORTHO05D006527 4.2e-123 445.3 455 55.6
C09p10650 Brassica napus HOM05D004796 ORTHO05D006527 5.5e-123 444.9 457 55.1
BcaC04g23250 Brassica carinata HOM05D004796 ORTHO05D006527 1.2e-122 443.7 457 55.1
Thhalv10004176m.g Eutrema salsugineum HOM05D004796 ORTHO05D006527 1.6e-122 443.4 460 54.6
Nitab4.5_0000396g0100 Nicotiana tabacum HOM05D004796 ORTHO05D006527 4.7e-122 441.8 391 63.2
Carub.0008s2662 Capsella rubella HOM05D004796 ORTHO05D006527 4.0e-121 438.7 459 54.7
CDE01G0270 Ceratophyllum demersum HOM05D004796 ORTHO05D006527 4.0e-121 438.7 384 61.5
Migut.H00312 Erythranthe guttata HOM05D004796 ORTHO05D006527 4.0e-121 438.7 427 60.7
Os09g0338400 Oryza sativa ssp. japonica HOM05D004796 ORTHO05D006527 1.5e-120 436.8 459 53.4
Pp3c2_20850 Physcomitrium patens HOM05D004796 ORTHO05D006527 4.9e-119 431.8 440 53.9
CsaV3_6G044470 Cucumis sativus L. HOM05D004796 ORTHO05D006527 1.4e-118 430.3 460 55.2
Peaxi162Scf00096g01526 Petunia axillaris HOM05D004796 ORTHO05D006527 9.1e-118 427.6 338 66.9
SMO172G0132 Selaginella moellendorffii HOM05D004796 ORTHO05D006527 9.1e-118 427.6 410 57.1
CBR_g17082 Chara braunii HOM05D004796 ORTHO05D006527 2.0e-117 426.4 444 52.9
Pp3c1_20380 Physcomitrium patens HOM05D004796 ORTHO05D006527 3.5e-117 425.6 432 53.9
CBR_g17075 Chara braunii HOM05D004796 ORTHO05D006527 4.5e-117 425.2 444 52.9
GSVIVG01008311001 Vitis vinifera HOM05D004796 ORTHO05D006527 5.0e-116 421.8 377 64.5
Mapoly0184s0007 Marchantia polymorpha HOM05D004796 ORTHO05D006527 8.9e-113 411.0 411 54.5
PRCOL_00005106 Prasinoderma coloniale HOM05D004796 ORTHO05D006527 3.9e-108 395.6 343 56.9
Aa31LG11G11240 Aethionema arabicum HOM05D004796 ORTHO05D006527 5.0e-108 395.2 382 56.8
Cre02.g146250 Chlamydomonas reinhardtii HOM05D004796 ORTHO05D006527 7.5e-104 381.3 455 46.8
Haze_27134 Corylus avellana HOM05D004796 ORTHO05D006527 2.9e-103 379.4 330 57.9
MCO07G690 Micromonas commoda HOM05D004796 ORTHO05D006527 1.1e-102 377.5 410 49.5
Peaxi162Scf00854g00110 Petunia axillaris HOM05D004796 ORTHO05D006527 2.4e-102 376.3 338 63.6
EL10Ac6g14948 Beta vulgaris HOM05D004796 ORTHO05D006527 5.4e-102 375.2 372 56.5
AagrBONN_evm.TU.Sc2ySwM_228.3102 Anthoceros agrestis HOM05D004796 ORTHO05D006527 3.1e-97 359.4 412 49.0
GSVIVG01003606001 Vitis vinifera HOM05D004796 ORTHO05D006527 2.2e-95 353.2 305 64.9
Cfa026265 Carpinus fangiana HOM05D004796 ORTHO05D006527 1.6e-82 310.5 404 43.8
TAR381G1547 Trochodendron aralioides HOM05D004796 ORTHO05D006527 8.9e-81 304.7 341 53.7
THA.LOC104817643 Tarenaya hassleriana HOM05D004796 ORTHO05D006527 8.1e-66 255.0 316 49.1
Dinv26978 Davidia involucrata HOM05D004796 ORTHO05D016811 6.7e-60 235.3 161 78.9
MBI11_g19461_MAGBIO Magnolia biondii HOM05D004796 ORTHO05D006527 9.6e-59 231.5 278 48.6
HanXRQChr14g0447641 Helianthus annuus HOM05D004796 ORTHO05D006527 3.1e-57 226.5 154 76.0
THA.LOC104800063 Tarenaya hassleriana HOM05D004796 ORTHO05D016811 5.3e-49 199.1 112 87.5
ECA240G3001 Erigeron canadensis HOM05D004796 ORTHO05D006527 6.3e-42 175.6 98 89.8
FAN04G2432 Fragaria x ananassa HOM05D004796 ORTHO05D016811 2.0e-40 170.6 99 85.9
FvH4_3g39110 Fragaria vesca HOM05D004796 ORTHO05D016811 8.8e-36 155.2 91 84.6
FvH4_4g11530 Fragaria vesca HOM05D004796 ORTHO05D016811 2.0e-35 154.1 91 85.7
FAN11G3064 Fragaria x ananassa HOM05D004796 ORTHO05D016811 4.1e-33 146.4 83 88.0
HPP92_019568 Vanilla planifolia HOM05D004796 ORTHO05D016811 4.2e-30 136.3 84 79.8
CAN.G541.23 Capsicum annuum HOM05D004796 ORTHO05D006527 8.2e-26 122.1 94 73.4
RcHm_v2.0_Chr5g0045361 Rosa chinensis HOM05D004796 ORTHO05D006527 2.0e-24 117.5 83 71.1
CBR_g8345 Chara braunii HOM05D004796 ORTHO05D034338 7.7e-24 115.5 386 25.4
Duzib160G0718 Durio zibethinus HOM05D004796 ORTHO05D006527 4.4e-19 99.8 93 51.6
BcaC01g02817 Brassica carinata HOM05D004796 ORTHO05D016811 3.2e-14 83.6 55 81.8
C03p59950 Brassica napus HOM05D004796 ORTHO05D016811 3.4e-11 73.6 42 85.7
BolC3t18259H Brassica oleracea HOM05D004796 ORTHO05D016811 3.4e-11 73.6 42 85.7
Cre07.g322000 Chlamydomonas reinhardtii HOM05D004796 ORTHO05D034338 9.8e-11 72.0 238 28.6
MCO10G007 Micromonas commoda HOM05D004796 ORTHO05D034338 2.8e-10 70.5 116 33.6
RcHm_v2.0_Chr2g0109351 Rosa chinensis HOM05D004796 ORTHO05D006527 1.4e-09 68.2 74 48.6
CAN.G212.10 Capsicum annuum HOM05D000007 ORTHO05D000039 1.3e-07 61.6 54 61.1
HPP92_019567 Vanilla planifolia HOM05D004796 ORTHO05D006527 6.5e-07 59.3 107 40.2


User provided reference genes

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