Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow3G2946 Salvia bowleyana HOM05D004657 ORTHO05D005562 3.0e-106 388.7 213 100.0
Cc00_g16220 Coffea canephora HOM05D004657 ORTHO05D005562 2.3e-82 309.3 213 77.9
Gohir.A02G143600 Gossypium hirsutum HOM05D004657 ORTHO05D005562 6.7e-82 307.8 213 75.1
MSTRG.3785 Avicennia marina HOM05D004657 ORTHO05D005562 1.9e-81 306.2 213 77.9
Gorai.003G038700 Gossypium raimondii HOM05D004657 ORTHO05D005562 1.9e-81 306.2 213 74.2
Hma1.2p1_0047F.1_g027890 Hydrangea macrophylla HOM05D004657 ORTHO05D005562 3.3e-81 305.4 213 75.6
Migut.L00115 Erythranthe guttata HOM05D004657 ORTHO05D005562 9.6e-81 303.9 213 76.1
Ciclev10027598m.g Citrus clementina HOM05D004657 ORTHO05D005562 1.6e-80 303.1 213 73.2
Cpa.g.sc621.1 Carica papaya HOM05D004657 ORTHO05D005562 3.7e-80 302.0 213 73.7
Gohir.D03G036900 Gossypium hirsutum HOM05D004657 ORTHO05D005562 4.8e-80 301.6 213 73.7
Potri.005G076500 Populus trichocarpa HOM05D004657 ORTHO05D005562 6.2e-80 301.2 213 74.6
Prupe.6G184700 Prunus persica HOM05D004657 ORTHO05D005562 6.2e-80 301.2 213 74.2
Thecc.01G102700 Theobroma cacao HOM05D004657 ORTHO05D005562 6.2e-80 301.2 213 74.6
TAR381G0611 Trochodendron aralioides HOM05D004657 ORTHO05D005562 1.4e-79 300.1 213 73.7
MSTRG.23340 Avicennia marina HOM05D004657 ORTHO05D005562 1.8e-79 299.7 213 72.8
Manes.12G135900 Manihot esculenta HOM05D004657 ORTHO05D005562 2.4e-79 299.3 213 72.8
unitig_748.g8654 Utricularia gibba HOM05D004657 ORTHO05D005562 2.4e-79 299.3 213 74.2
FAN26G2002 Fragaria x ananassa HOM05D004657 ORTHO05D005562 5.3e-79 298.1 213 72.8
COL.COLO4_09954 Corchorus olitorius HOM05D004657 ORTHO05D005562 9.0e-79 297.4 213 72.8
Eucgr.I00428 Eucalyptus grandis HOM05D004657 ORTHO05D005562 9.0e-79 297.4 213 73.2
FAN19G1231 Fragaria x ananassa HOM05D004657 ORTHO05D005562 9.0e-79 297.4 213 72.8
Sabra05G0063000 Salix brachista HOM05D004657 ORTHO05D005562 9.0e-79 297.4 213 73.7
Haze_24945 Corylus avellana HOM05D004657 ORTHO05D005562 1.2e-78 297.0 213 73.7
Cfa002676 Carpinus fangiana HOM05D004657 ORTHO05D005562 2.0e-78 296.2 213 73.2
Duzib264G0234 Durio zibethinus HOM05D004657 ORTHO05D005562 2.0e-78 296.2 213 71.4
FAN28G0529 Fragaria x ananassa HOM05D004657 ORTHO05D005562 3.4e-78 295.4 213 72.8
Potri.007G091900 Populus trichocarpa HOM05D004657 ORTHO05D005562 4.5e-78 295.0 213 72.3
CiPaw.04G098700 Carya illinoinensis HOM05D004657 ORTHO05D005562 5.8e-78 294.7 213 71.8
DCAR_014230 Daucus carota HOM05D004657 ORTHO05D005562 7.6e-78 294.3 213 72.3
FAN23G0181 Fragaria x ananassa HOM05D004657 ORTHO05D005562 7.6e-78 294.3 213 72.3
PGR004G1209 Punica granatum HOM05D004657 ORTHO05D005562 7.6e-78 294.3 213 72.8
CANSAT01G2418 Cannabis sativa HOM05D004657 ORTHO05D005562 1.0e-77 293.9 213 71.4
Duzib147G0720 Durio zibethinus HOM05D004657 ORTHO05D005562 1.0e-77 293.9 213 71.8
Sp7g36050 Schrenkiella parvula HOM05D004657 ORTHO05D005562 1.3e-77 293.5 213 72.3
Aa31LG6G15430 Aethionema arabicum HOM05D004657 ORTHO05D005562 2.9e-77 292.4 213 72.8
Sabra07G0075500 Salix brachista HOM05D004657 ORTHO05D005562 2.9e-77 292.4 213 71.8
arahy.Tifrunner.gnm1.ann1.4BU7T8 Arachis hypogaea HOM05D004657 ORTHO05D005562 3.8e-77 292.0 213 70.9
arahy.Tifrunner.gnm1.ann1.Q2VPH2 Arachis hypogaea HOM05D004657 ORTHO05D005562 3.8e-77 292.0 213 70.9
CiPaw.03G141100 Carya illinoinensis HOM05D004657 ORTHO05D005562 3.8e-77 292.0 213 69.5
TAR625G0843 Trochodendron aralioides HOM05D004657 ORTHO05D005562 3.8e-77 292.0 213 72.3
AT4G39840 Arabidopsis thaliana HOM05D004657 ORTHO05D005562 5.0e-77 291.6 213 71.8
Thhalv10026765m.g Eutrema salsugineum HOM05D004657 ORTHO05D005562 5.0e-77 291.6 213 72.3
Lj2P550T25 Lonicera japonica HOM05D004657 ORTHO05D005562 5.0e-77 291.6 214 73.8
Lsat_1_v5_gn_4_142741 Lactuca sativa HOM05D004657 ORTHO05D005562 8.4e-77 290.8 213 73.2
AL7G12070 Arabidopsis lyrata HOM05D004657 ORTHO05D005562 1.1e-76 290.4 213 71.4
RcHm_v2.0_Chr2g0114541 Rosa chinensis HOM05D004657 ORTHO05D005562 1.1e-76 290.4 213 70.9
QL06p049779 Quercus lobata HOM05D004657 ORTHO05D005562 2.5e-76 289.3 212 72.2
Carub.0007s0176 Capsella rubella HOM05D004657 ORTHO05D005562 3.2e-76 288.9 213 70.9
MD15G1325300 Malus domestica HOM05D004657 ORTHO05D005562 4.2e-76 288.5 211 72.0
Manes.13G075300 Manihot esculenta HOM05D004657 ORTHO05D005562 4.2e-76 288.5 213 70.4
Hma1.2p1_0308F.1_g120150 Hydrangea macrophylla HOM05D004657 ORTHO05D005562 5.5e-76 288.1 213 70.4
CARHR246860 Cardamine hirsuta HOM05D004657 ORTHO05D005562 7.2e-76 287.7 213 70.9
unitig_32.g11813 Utricularia gibba HOM05D004657 ORTHO05D005562 9.3e-76 287.3 213 70.4
CSS0006663 Camellia sinensis var. sinensis HOM05D004657 ORTHO05D005562 1.6e-75 286.6 213 70.0
Rhsim10G0161200 Rhododendron simsii HOM05D004657 ORTHO05D005562 1.6e-75 286.6 213 71.8
A01p00750 Brassica napus HOM05D004657 ORTHO05D005562 2.1e-75 286.2 213 70.0
BraA01t00078Z Brassica rapa HOM05D004657 ORTHO05D005562 2.1e-75 286.2 213 70.0
MELO3C007762.2 Cucumis melo HOM05D004657 ORTHO05D005562 2.1e-75 286.2 213 70.0
Sed0024330 Sechium edule HOM05D004657 ORTHO05D005562 4.6e-75 285.0 213 70.4
SGA_v2.0_scaffold34G13594 Striga asiatica HOM05D004657 ORTHO05D005562 4.6e-75 285.0 191 78.0
ClCG01G018830 Citrullus lanatus HOM05D004657 ORTHO05D005562 6.1e-75 284.6 213 69.5
Lalb_Chr07g0185151 Lupinus albus HOM05D004657 ORTHO05D005562 1.0e-74 283.9 210 69.5
VMungo1383G1250 Vigna mungo HOM05D004657 ORTHO05D005562 1.0e-74 283.9 213 69.0
CsaV3_6G045490 Cucumis sativus L. HOM05D004657 ORTHO05D005562 1.3e-74 283.5 213 69.0
BcaNung00905 Brassica carinata HOM05D004657 ORTHO05D005562 1.8e-74 283.1 213 69.0
C01p00860 Brassica napus HOM05D004657 ORTHO05D005562 1.8e-74 283.1 213 69.0
BolC1t00087H Brassica oleracea HOM05D004657 ORTHO05D005562 1.8e-74 283.1 213 69.0
PGSC0003DMG400023187 Solanum tuberosum HOM05D004657 ORTHO05D005562 2.3e-74 282.7 213 70.9
Gohir.D11G222100 Gossypium hirsutum HOM05D004657 ORTHO05D005562 3.0e-74 282.3 213 69.5
Nitab4.5_0000897g0030 Nicotiana tabacum HOM05D004657 ORTHO05D005562 3.9e-74 282.0 213 70.0
Sopen03g021540 Solanum pennellii HOM05D004657 ORTHO05D005562 3.9e-74 282.0 213 70.4
THA.LOC104807698 Tarenaya hassleriana HOM05D004657 ORTHO05D005562 5.1e-74 281.6 213 70.0
MSTRG.2565 Avicennia marina HOM05D004657 ORTHO05D005562 6.7e-74 281.2 205 72.2
BcaNung05325 Brassica carinata HOM05D004657 ORTHO05D005562 1.1e-73 280.4 214 69.6
Peaxi162Scf00805g00021 Petunia axillaris HOM05D004657 ORTHO05D005562 1.1e-73 280.4 213 69.5
C03p78370 Brassica napus HOM05D004657 ORTHO05D005562 1.5e-73 280.0 214 69.6
Solyc03g078640.1 Solanum lycopersicum HOM05D004657 ORTHO05D005562 1.9e-73 279.6 213 70.0
BolC3t20095H Brassica oleracea HOM05D004657 ORTHO05D005562 2.5e-73 279.3 214 69.2
PGSC0003DMG400001895 Solanum tuberosum HOM05D004657 ORTHO05D005562 2.5e-73 279.3 213 68.5
Glyma.08G136600 Glycine max HOM05D004657 ORTHO05D005562 3.3e-73 278.9 213 68.1
A08p23310 Brassica napus HOM05D004657 ORTHO05D005562 4.3e-73 278.5 214 69.2
BraA08t34286Z Brassica rapa HOM05D004657 ORTHO05D005562 4.3e-73 278.5 214 69.2
CAN.G480.1 Capsicum annuum HOM05D004657 ORTHO05D005562 4.3e-73 278.5 213 70.4
Phvul.002G255300 Phaseolus vulgaris HOM05D004657 ORTHO05D005562 4.3e-73 278.5 213 68.5
Lsat_1_v5_gn_5_43821 Lactuca sativa HOM05D004657 ORTHO05D005562 5.7e-73 278.1 213 69.5
HanXRQChr17g0543271 Helianthus annuus HOM05D004657 ORTHO05D005562 7.4e-73 277.7 213 71.8
Nitab4.5_0000004g0340 Nicotiana tabacum HOM05D004657 ORTHO05D005562 9.7e-73 277.3 213 69.5
PSO541G4803 Papaver somniferum HOM05D004657 ORTHO05D005562 2.8e-72 275.8 218 67.4
Phvul.001G251700 Phaseolus vulgaris HOM05D004657 ORTHO05D005562 2.8e-72 275.8 213 68.5
Lj4g0007261 Lotus japonicus HOM05D004657 ORTHO05D005562 3.7e-72 275.4 214 69.6
Lj6g0008145 Lotus japonicus HOM05D004657 ORTHO05D005562 3.7e-72 275.4 213 67.6
Gohir.A11G200900 Gossypium hirsutum HOM05D004657 ORTHO05D005562 4.8e-72 275.0 213 68.1
Sopen04g024940 Solanum pennellii HOM05D004657 ORTHO05D005562 6.3e-72 274.6 213 68.5
TWI77G0153 Tripterygium wilfordii HOM05D004657 ORTHO05D005562 6.3e-72 274.6 213 68.1
Glyma.11G239700 Glycine max HOM05D004657 ORTHO05D005562 8.2e-72 274.2 213 67.1
Gorai.007G239400 Gossypium raimondii HOM05D004657 ORTHO05D005562 8.2e-72 274.2 213 68.1
THA.LOC104824872 Tarenaya hassleriana HOM05D004657 ORTHO05D005562 1.1e-71 273.9 213 66.2
Atru.chr4.84 Acer truncatum HOM05D004657 ORTHO05D005562 1.4e-71 273.5 214 66.8
Psat7g054320 Pisum sativum HOM05D004657 ORTHO05D005562 1.4e-71 273.5 213 65.7
Aqoxy6G00812 Aquilegia oxysepala HOM05D004657 ORTHO05D005562 1.8e-71 273.1 213 65.3
VMungo0251G2127 Vigna mungo HOM05D004657 ORTHO05D005562 1.8e-71 273.1 213 67.1
Solyc04g055090.1 Solanum lycopersicum HOM05D004657 ORTHO05D005562 2.4e-71 272.7 213 67.6
Psat5g089640 Pisum sativum HOM05D004657 ORTHO05D005562 3.1e-71 272.3 213 66.2
Glyma.18G017700 Glycine max HOM05D004657 ORTHO05D005562 6.9e-71 271.2 213 65.7
Medtr3g087360 Medicago truncatula HOM05D004657 ORTHO05D005562 6.9e-71 271.2 213 65.7
PSO781G0272 Papaver somniferum HOM05D004657 ORTHO05D005562 6.9e-71 271.2 218 66.5
TPR.G6250 Trifolium pratense HOM05D004657 ORTHO05D005562 1.2e-70 270.4 213 65.7
Medtr8g090265 Medicago truncatula HOM05D004657 ORTHO05D005562 2.6e-70 269.2 213 65.3
SGA_v2.0_scaffold47G17783 Striga asiatica HOM05D004657 ORTHO05D005562 3.4e-70 268.9 196 70.4
TWI53G1309 Tripterygium wilfordii HOM05D004657 ORTHO05D005562 3.4e-70 268.9 213 66.2
Sc16g0005630 Simmondsia chinensis HOM05D004657 ORTHO05D005562 1.6e-67 260.0 213 65.7
DCAR_011511 Daucus carota HOM05D004657 ORTHO05D005562 1.1e-65 253.8 211 64.9
Glyma.05G179100 Glycine max HOM05D004657 ORTHO05D005562 1.5e-65 253.4 213 63.8
unitig_88.g27724 Utricularia gibba HOM05D004657 ORTHO05D005562 1.4e-63 246.9 199 64.3
MBI02_g08733_MAGBIO Magnolia biondii HOM05D004657 ORTHO05D005562 1.5e-62 243.4 215 61.9
DCAR_001485 Daucus carota HOM05D004657 ORTHO05D005562 6.1e-59 231.5 211 58.8
Lj4g0017498 Lotus japonicus HOM05D004657 ORTHO05D005562 2.2e-56 223.0 207 59.9
SHI11535 Sapria himalayana HOM05D004657 ORTHO05D000023 9.4e-52 207.6 213 53.1
HPP92_016347 Vanilla planifolia HOM05D004657 ORTHO05D008789 2.9e-45 186.0 214 49.5
Actinidia36592 Actinidia chinensis HOM05D004657 ORTHO05D005562 8.3e-40 167.9 111 76.6
SEGI_28024 Sequoiadendron giganteum HOM05D004657 ORTHO05D005562 1.3e-37 160.6 215 41.9
Os08g0411300 Oryza sativa ssp. japonica HOM05D004657 ORTHO05D005562 3.8e-37 159.1 217 43.8
Zm00001eb001010 Zea mays HOM05D004657 ORTHO05D005562 1.0e-34 151.0 224 42.9
ATR0564G070 Amborella trichopoda HOM05D004657 ORTHO05D005562 3.4e-33 146.0 203 40.4
Mapoly0036s0106 Marchantia polymorpha HOM05D004657 ORTHO05D005562 7.5e-33 144.8 211 39.8
SMO012G0039 Selaginella moellendorffii HOM05D004657 ORTHO05D005562 5.9e-30 135.2 203 39.9
AagrBONN_evm.TU.Sc2ySwM_368.2671 Anthoceros agrestis HOM05D004657 ORTHO05D005562 1.3e-29 134.0 194 39.7
TPR.G17843 Trifolium pratense HOM05D004657 ORTHO05D005562 2.1e-27 126.7 89 67.4
Pp3c24_14210 Physcomitrium patens HOM05D004657 ORTHO05D005562 2.8e-27 126.3 201 38.3
Pp3c8_17900 Physcomitrium patens HOM05D004657 ORTHO05D005562 1.0e-26 124.4 201 35.8
Nitab4.5_0000104g0160 Nicotiana tabacum HOM05D004657 ORTHO05D005562 1.8e-26 123.6 86 68.6
Zm00001eb119110 Zea mays HOM05D004657 ORTHO05D005562 1.8e-26 123.6 224 37.9
Zm00001eb272140 Zea mays HOM05D004657 ORTHO05D005562 5.9e-22 108.6 161 42.2
CDE12G0473 Ceratophyllum demersum HOM05D001805 ORTHO05D001734 4.3e-20 102.4 96 56.2
Zm00001eb168110 Zea mays HOM05D004657 ORTHO05D005562 4.3e-20 102.4 217 35.0
CBR_g45841 Chara braunii HOM05D004657 ORTHO05D005562 2.1e-19 100.1 192 31.8
CBR_g57642 Chara braunii HOM05D004657 ORTHO05D005562 6.8e-18 95.1 184 30.4
Zm00001eb024090 Zea mays HOM05D004657 ORTHO05D005562 3.9e-13 79.3 108 45.4
Zm00001eb030060 Zea mays HOM05D004657 ORTHO05D005562 6.2e-11 72.0 91 47.3
Zm00001eb342170 Zea mays HOM05D004657 ORTHO05D005562 1.1e-10 71.2 105 42.9
Oeu002176.1 Olea europaea HOM05D004657 ORTHO05D005562 1.5e-09 67.4 43 62.8
Zm00001eb210920 Zea mays HOM05D004657 ORTHO05D005562 1.3e-08 64.3 183 31.1
Zm00001eb332070 Zea mays HOM05D004657 ORTHO05D005562 2.2e-08 63.5 55 50.9
Oeu054841.2 Olea europaea HOM05D004657 ORTHO05D005562 3.7e-08 62.8 35 80.0
Zm00001eb008600 Zea mays HOM05D004657 ORTHO05D005562 8.3e-08 61.6 211 28.9
MD01G1028100 Malus domestica HOM05D004657 ORTHO05D005562 5.4e-07 58.9 49 61.2
MCO08G346 Micromonas commoda HOM05D004657 ORTHO05D005562 7.8e-06 55.1 126 28.6


User provided reference genes

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