Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow3G2874 Salvia bowleyana HOM05D006243 ORTHO05D007688 6.2e-231 803.9 447 100.0
MSTRG.23392 Avicennia marina HOM05D006243 ORTHO05D007688 4.1e-150 535.4 434 73.3
Oeu012257.1 Olea europaea HOM05D006243 ORTHO05D007688 7.3e-147 524.6 429 72.7
Migut.H02264 Erythranthe guttata HOM05D006243 ORTHO05D007688 9.9e-144 514.2 426 72.5
Oeu032326.2 Olea europaea HOM05D006243 ORTHO05D007688 1.3e-143 513.8 434 71.2
CAN.G222.23 Capsicum annuum HOM05D006243 ORTHO05D007688 1.7e-140 503.4 429 70.4
Cc07_g13520 Coffea canephora HOM05D006243 ORTHO05D007688 1.7e-140 503.4 428 70.1
PGSC0003DMG402015686 Solanum tuberosum HOM05D006243 ORTHO05D007688 2.3e-140 503.1 426 70.7
Sopen11g005930 Solanum pennellii HOM05D006243 ORTHO05D007688 3.6e-138 495.7 426 70.0
Peaxi162Scf00305g00613 Petunia axillaris HOM05D006243 ORTHO05D007688 4.7e-138 495.4 426 70.2
Solyc11g011170.2 Solanum lycopersicum HOM05D006243 ORTHO05D007688 8.1e-138 494.6 426 70.0
GSVIVG01030779001 Vitis vinifera HOM05D006243 ORTHO05D007688 2.4e-137 493.0 433 67.9
CSS0038083 Camellia sinensis var. sinensis HOM05D006243 ORTHO05D007688 9.9e-136 487.6 429 68.3
DCAR_014173 Daucus carota HOM05D006243 ORTHO05D007688 1.9e-131 473.4 432 65.7
Rhsim10G0177000 Rhododendron simsii HOM05D006243 ORTHO05D007688 9.6e-131 471.1 428 66.6
Haze_14258 Corylus avellana HOM05D006243 ORTHO05D007688 1.4e-129 467.2 430 67.4
Atru.chr1.1900 Acer truncatum HOM05D006243 ORTHO05D007688 2.4e-129 466.5 439 67.7
Ciclev10011587m.g Citrus clementina HOM05D006243 ORTHO05D007688 3.1e-129 466.1 441 66.9
Cfa007817 Carpinus fangiana HOM05D006243 ORTHO05D007688 9.0e-129 464.5 433 66.7
vmacro07692 Vaccinium macrocarpon HOM05D006243 ORTHO05D007688 3.4e-128 462.6 466 59.2
Actinidia06497 Actinidia chinensis HOM05D006243 ORTHO05D007688 4.4e-128 462.2 377 71.9
Thecc.04G115200 Theobroma cacao HOM05D006243 ORTHO05D007688 7.6e-128 461.5 420 66.9
TAR629G1693 Trochodendron aralioides HOM05D006243 ORTHO05D007688 3.8e-127 459.1 453 63.8
CiPaw.03G071500 Carya illinoinensis HOM05D006243 ORTHO05D007688 8.4e-127 458.0 432 65.7
Lsat_1_v5_gn_3_64500 Lactuca sativa HOM05D006243 ORTHO05D007688 8.4e-127 458.0 439 60.6
ECA246G3278 Erigeron canadensis HOM05D006243 ORTHO05D007688 1.4e-126 457.2 435 63.9
Potri.017G129100 Populus trichocarpa HOM05D006243 ORTHO05D007688 2.4e-126 456.4 435 64.8
HanXRQChr13g0418351 Helianthus annuus HOM05D006243 ORTHO05D007688 3.2e-126 456.1 439 64.0
Manes.01G117900 Manihot esculenta HOM05D006243 ORTHO05D007688 3.2e-126 456.1 439 64.5
TWI53G0799 Tripterygium wilfordii HOM05D006243 ORTHO05D007688 4.6e-125 452.2 434 65.0
Duzib133G1335 Durio zibethinus HOM05D006243 ORTHO05D007688 3.0e-124 449.5 422 66.1
CANSAT64G2718 Cannabis sativa HOM05D006243 ORTHO05D007688 1.9e-123 446.8 436 63.5
Sabra17G0107600 Salix brachista HOM05D006243 ORTHO05D007688 1.3e-122 444.1 450 63.3
Nn4g24254 Nelumbo nucifera HOM05D006243 ORTHO05D007688 1.6e-122 443.7 439 64.0
Cpa.g.sc67.47 Carica papaya HOM05D006243 ORTHO05D007688 2.1e-122 443.4 434 64.5
Nitab4.5_0000201g0240 Nicotiana tabacum HOM05D006243 ORTHO05D007688 8.1e-122 441.4 420 65.5
Prupe.3G161300 Prunus persica HOM05D006243 ORTHO05D007688 2.4e-121 439.9 440 63.9
Gohir.A07G078300 Gossypium hirsutum HOM05D006243 ORTHO05D007688 1.2e-120 437.6 409 66.3
Eucgr.J01597 Eucalyptus grandis HOM05D006243 ORTHO05D007688 4.5e-120 435.6 419 65.9
MD09G1263800 Malus domestica HOM05D006243 ORTHO05D007688 9.9e-120 434.5 433 62.6
Gorai.001G088700 Gossypium raimondii HOM05D006243 ORTHO05D007688 1.3e-119 434.1 412 66.0
Lj4A263G87 Lonicera japonica HOM05D006243 ORTHO05D007688 2.2e-119 433.3 342 76.0
Gohir.D07G083100 Gossypium hirsutum HOM05D006243 ORTHO05D007688 4.2e-118 429.1 412 65.3
MD17G1259100 Malus domestica HOM05D006243 ORTHO05D007688 5.4e-118 428.7 450 62.4
SGA_v2.0_scaffold108G30955 Striga asiatica HOM05D006243 ORTHO05D007688 1.2e-117 427.6 435 64.6
PSO017G3733 Papaver somniferum HOM05D006243 ORTHO05D007688 1.3e-116 424.1 433 63.3
Sc10g0004760 Simmondsia chinensis HOM05D006243 ORTHO05D007688 1.3e-114 417.5 421 64.4
PSO478G0940 Papaver somniferum HOM05D006243 ORTHO05D007688 1.6e-114 417.2 430 62.6
Aa31LG2G3000 Aethionema arabicum HOM05D006243 ORTHO05D007688 2.1e-114 416.8 428 63.1
FAN28G0309 Fragaria x ananassa HOM05D006243 ORTHO05D007688 2.1e-114 416.8 444 61.0
Aqoxy3G00051 Aquilegia oxysepala HOM05D006243 ORTHO05D007688 8.1e-114 414.8 424 63.0
Carub.0002s1234 Capsella rubella HOM05D006243 ORTHO05D007688 1.1e-113 414.5 377 67.4
FAN26G0580 Fragaria x ananassa HOM05D006243 ORTHO05D007688 1.1e-113 414.5 438 60.5
RcHm_v2.0_Chr3g0493131 Rosa chinensis HOM05D006243 ORTHO05D007688 1.1e-113 414.5 442 61.3
FvH4_1g28740 Fragaria vesca HOM05D006243 ORTHO05D007688 2.4e-113 413.3 438 60.5
AT1G66330 Arabidopsis thaliana HOM05D006243 ORTHO05D007688 4.0e-113 412.5 373 68.6
EL10Ac2g03168 Beta vulgaris HOM05D006243 ORTHO05D007688 4.0e-113 412.5 402 62.7
FAN19G0552 Fragaria x ananassa HOM05D006243 ORTHO05D007688 4.0e-113 412.5 438 60.5
Lalb_Chr10g0104381 Lupinus albus HOM05D006243 ORTHO05D007688 2.0e-112 410.2 374 67.4
CARHR058210 Cardamine hirsuta HOM05D006243 ORTHO05D007688 4.5e-112 409.1 369 68.6
Sp5g21350 Schrenkiella parvula HOM05D006243 ORTHO05D007688 4.5e-112 409.1 371 68.2
AL2G24050 Arabidopsis lyrata HOM05D006243 ORTHO05D007688 7.6e-112 408.3 373 68.6
AUR62038703 Chenopodium quinoa HOM05D006243 ORTHO05D007688 3.8e-111 406.0 421 60.1
arahy.Tifrunner.gnm1.ann1.Y3W4B5 Arachis hypogaea HOM05D006243 ORTHO05D007688 1.9e-110 403.7 327 75.2
AUR62018213 Chenopodium quinoa HOM05D006243 ORTHO05D007688 1.9e-110 403.7 423 59.6
BcaB05g24167 Brassica carinata HOM05D006243 ORTHO05D007688 3.2e-110 402.9 378 66.9
Nitab4.5_0009518g0020 Nicotiana tabacum HOM05D006243 ORTHO05D007688 3.2e-110 402.9 420 62.1
THA.LOC104805617 Tarenaya hassleriana HOM05D006243 ORTHO05D007688 4.2e-110 402.5 365 68.5
BcaB03g15275 Brassica carinata HOM05D006243 ORTHO05D007688 7.1e-110 401.7 364 69.8
ClCG05G011500 Citrullus lanatus HOM05D006243 ORTHO05D007688 4.6e-109 399.1 410 62.7
LjContig00141g0011202 Lotus japonicus HOM05D006243 ORTHO05D007688 6.0e-109 398.7 414 60.9
COL.COLO4_10159 Corchorus olitorius HOM05D006243 ORTHO05D007688 2.3e-108 396.7 467 55.0
BraA07t30960Z Brassica rapa HOM05D006243 ORTHO05D007688 3.0e-108 396.4 355 70.1
Glyma.02G245300 Glycine max HOM05D006243 ORTHO05D007688 3.0e-108 396.4 413 61.3
CsaV3_3G020810 Cucumis sativus L. HOM05D006243 ORTHO05D007688 5.1e-108 395.6 395 63.0
ATR0317G069 Amborella trichopoda HOM05D006243 ORTHO05D007688 8.7e-108 394.8 444 56.3
BcaC08g46068 Brassica carinata HOM05D006243 ORTHO05D007688 1.9e-107 393.7 356 69.4
BcaC03g14742 Brassica carinata HOM05D006243 ORTHO05D007688 5.6e-107 392.1 374 67.6
BolC2t08324H Brassica oleracea HOM05D006243 ORTHO05D007688 5.6e-107 392.1 374 67.6
A07p33290 Brassica napus HOM05D006243 ORTHO05D007688 7.4e-107 391.7 356 69.9
BraA02t06418Z Brassica rapa HOM05D006243 ORTHO05D007688 7.4e-107 391.7 365 69.3
C06p39620 Brassica napus HOM05D006243 ORTHO05D007688 4.8e-106 389.0 357 69.2
BolC6t39055H Brassica oleracea HOM05D006243 ORTHO05D007688 4.8e-106 389.0 357 69.2
Phvul.008G235800 Phaseolus vulgaris HOM05D006243 ORTHO05D007688 4.0e-105 386.0 413 60.8
MELO3C020192.2 Cucumis melo HOM05D006243 ORTHO05D007688 9.0e-105 384.8 402 61.2
C02p21930 Brassica napus HOM05D006243 ORTHO05D007688 7.6e-104 381.7 351 68.4
Medtr5g078290 Medicago truncatula HOM05D006243 ORTHO05D007688 3.8e-103 379.4 370 64.9
Lalb_Chr17g0346141 Lupinus albus HOM05D006243 ORTHO05D007688 4.9e-103 379.0 405 62.0
A02p13590 Brassica napus HOM05D006243 ORTHO05D007688 1.4e-102 377.5 342 70.5
Os05g0148700 Oryza sativa ssp. japonica HOM05D006243 ORTHO05D007688 7.1e-102 375.2 362 65.2
Zm00001eb165460 Zea mays HOM05D006243 ORTHO05D007688 1.6e-101 374.0 366 64.2
HPP92_027416 Vanilla planifolia HOM05D006243 ORTHO05D007688 3.9e-100 369.4 458 54.8
PGR004G2672 Punica granatum HOM05D006243 ORTHO05D007688 5.7e-99 365.5 316 72.5
CDE04G1800 Ceratophyllum demersum HOM05D006243 ORTHO05D007688 8.2e-98 361.7 334 68.3
unitig_736.g22596 Utricularia gibba HOM05D006243 ORTHO05D007688 3.1e-97 359.8 255 74.9
TPR.G8275 Trifolium pratense HOM05D006243 ORTHO05D007688 1.0e-95 354.8 299 64.5
Hund13108 Selenicereus undatus HOM05D006243 ORTHO05D007688 9.4e-94 348.2 255 71.0
arahy.Tifrunner.gnm1.ann1.SFD8TD Arachis hypogaea HOM05D006243 ORTHO05D007688 1.5e-91 340.9 322 68.3
SEGI_26344 Sequoiadendron giganteum HOM05D006243 ORTHO05D007688 1.1e-89 334.7 320 65.0
Ca_05826_v3 Cicer arietinum L. HOM05D006243 ORTHO05D007688 1.0e-84 318.2 423 52.2
Glyma.14G215400 Glycine max HOM05D006243 ORTHO05D007688 3.0e-84 316.6 359 60.4
Thhalv10018612m.g Eutrema salsugineum HOM05D006243 ORTHO05D007688 2.2e-82 310.5 297 68.4
Sed0013436 Sechium edule HOM05D006243 ORTHO05D007688 7.4e-75 285.4 298 63.4
Actinidia17213 Actinidia chinensis HOM05D006243 ORTHO05D007688 8.8e-68 261.9 195 72.8
Dinv28209 Davidia involucrata HOM05D006243 ORTHO05D007688 3.5e-64 250.0 254 65.4
Ah.10g032360 Amaranthus hybridus HOM05D006243 ORTHO05D007688 1.5e-62 244.6 413 41.4
MD17G1258600 Malus domestica HOM05D006243 ORTHO05D007688 9.1e-57 225.3 228 59.2
Mapoly0055s0114 Marchantia polymorpha HOM05D006243 ORTHO05D007688 6.6e-55 219.2 325 46.8
AagrBONN_evm.TU.Sc2ySwM_117.2468 Anthoceros agrestis HOM05D006243 ORTHO05D007688 4.7e-53 213.0 315 46.7
Pp3c5_8230 Physcomitrium patens HOM05D006243 ORTHO05D007688 1.8e-49 201.1 300 49.3
VMungo0647G1521 Vigna mungo HOM05D006243 ORTHO05D007688 2.4e-49 200.7 130 78.5
Psat2g047960 Pisum sativum HOM05D006243 ORTHO05D007688 3.2e-49 200.3 336 48.5
Pp3c16_1710 Physcomitrium patens HOM05D006243 ORTHO05D007688 4.5e-48 196.4 237 47.7
Pp3c25_7980 Physcomitrium patens HOM05D006243 ORTHO05D007688 1.9e-46 191.0 225 47.6
VMungo0647G1427 Vigna mungo HOM05D006243 ORTHO05D007688 3.1e-44 183.7 303 48.2
QL02p058075 Quercus lobata HOM05D006243 ORTHO05D007688 8.9e-44 182.2 219 59.8
SMO238G0021 Selaginella moellendorffii HOM05D006243 ORTHO05D007688 1.2e-35 155.2 270 36.7
Lsat_1_v5_gn_2_20381 Lactuca sativa HOM05D006243 ORTHO05D007688 2.2e-34 151.0 109 72.5
CBR_g27960 Chara braunii HOM05D006243 ORTHO05D007688 6.4e-34 149.4 237 40.1
RcHm_v2.0_Chr7g0216651 Rosa chinensis HOM05D006243 ORTHO05D007688 2.6e-27 127.5 77 85.7
Actinidia17214 Actinidia chinensis HOM05D006243 ORTHO05D007688 1.3e-23 115.2 160 53.1
Lsat_1_v5_gn_9_50281 Lactuca sativa HOM05D006243 ORTHO05D007688 5.4e-17 93.2 60 78.3
unitig_736.g22595 Utricularia gibba HOM05D006243 ORTHO05D007688 3.6e-13 80.5 137 40.9
Lsat_1_v5_gn_9_64341 Lactuca sativa HOM05D000326 ORTHO05D000312 2.4e-09 67.8 101 46.5


User provided reference genes

Program Settings