Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow3G2867 Salvia bowleyana HOM05D037314 ORTHO05D005012 1.1e-74 283.1 135 100.0
SalBow8G2371 Salvia bowleyana HOM05D037314 ORTHO05D351356 1.5e-39 166.4 82 95.1
SalBow8G3469 Salvia bowleyana HOM05D004167 ORTHO05D005012 2.9e-22 109.0 53 96.2
SalBow3G3756 Salvia bowleyana HOM05D004167 ORTHO05D005012 1.4e-21 106.7 52 96.2
SalBow8G0442 Salvia bowleyana HOM05D037314 ORTHO05D355491 1.4e-13 80.1 67 56.7
SalBow5G0433 Salvia bowleyana HOM05D004167 ORTHO05D005012 3.2e-13 79.0 37 97.3
SalBow6G7174 Salvia bowleyana HOM05D004167 ORTHO05D005012 7.1e-13 77.8 42 85.7
Sabra08G0040300 Salix brachista HOM05D004167 ORTHO05D005012 6.0e-12 74.7 45 75.6
CAN.G1013.26 Capsicum annuum HOM05D004167 ORTHO05D005012 1.8e-11 73.2 36 88.9
Nitab4.5_0006489g0010 Nicotiana tabacum HOM05D004167 ORTHO05D005012 1.8e-11 73.2 35 94.3
Nitab4.5_0010256g0010 Nicotiana tabacum HOM05D004167 ORTHO05D005012 1.8e-11 73.2 35 94.3
Peaxi162Scf00015g01117 Petunia axillaris HOM05D004167 ORTHO05D005012 2.3e-11 72.8 35 91.4
Lalb_Chr10g0091651 Lupinus albus HOM05D004167 ORTHO05D005012 3.0e-11 72.4 36 88.9
Medtr7g026260 Medicago truncatula HOM05D004167 ORTHO05D005012 3.0e-11 72.4 36 86.1
VMungo1383G2822 Vigna mungo HOM05D004167 ORTHO05D005012 3.0e-11 72.4 36 88.9
Potri.008G055700 Populus trichocarpa HOM05D004167 ORTHO05D005012 3.9e-11 72.0 45 73.3
arahy.Tifrunner.gnm1.ann1.A8V5RI Arachis hypogaea HOM05D004167 ORTHO05D005012 5.1e-11 71.6 36 83.3
arahy.Tifrunner.gnm1.ann1.TM884Y Arachis hypogaea HOM05D004167 ORTHO05D005012 5.1e-11 71.6 36 83.3
Cpa.g.sc1.403 Carica papaya HOM05D004167 ORTHO05D005012 5.1e-11 71.6 36 86.1
Dinv26013 Davidia involucrata HOM05D004167 ORTHO05D005012 6.7e-11 71.2 36 83.3
Rhsim09G0165800 Rhododendron simsii HOM05D004167 ORTHO05D005012 6.7e-11 71.2 36 88.9
Solyc05g054460.3 Solanum lycopersicum HOM05D004167 ORTHO05D005012 6.7e-11 71.2 35 88.6
Sopen05g032950 Solanum pennellii HOM05D004167 ORTHO05D005012 6.7e-11 71.2 35 88.6
SGA_v2.0_scaffold108G31010 Striga asiatica HOM05D004167 ORTHO05D005012 6.7e-11 71.2 36 91.7
Cfa001475 Carpinus fangiana HOM05D004167 ORTHO05D005012 8.7e-11 70.9 36 86.1
Ca_07311_v3 Cicer arietinum L. HOM05D004167 ORTHO05D005012 8.7e-11 70.9 36 83.3
Glyma.02G091700 Glycine max HOM05D004167 ORTHO05D005012 8.7e-11 70.9 36 86.1
Glyma.18G291100 Glycine max HOM05D004167 ORTHO05D005012 8.7e-11 70.9 36 86.1
Lj1g0019937 Lotus japonicus HOM05D004167 ORTHO05D005012 8.7e-11 70.9 36 83.3
Oeu064381.1 Olea europaea HOM05D004167 ORTHO05D005012 8.7e-11 70.9 35 91.4
Oeu064382.1 Olea europaea HOM05D004167 ORTHO05D005012 8.7e-11 70.9 35 91.4
Actinidia13047 Actinidia chinensis HOM05D004167 ORTHO05D005012 1.1e-10 70.5 36 86.1
Nn5g26919 Nelumbo nucifera HOM05D004167 ORTHO05D005012 1.1e-10 70.5 36 88.9
QL08p059807 Quercus lobata HOM05D004167 ORTHO05D005012 1.1e-10 70.5 36 83.3
CSS0037407 Camellia sinensis var. sinensis HOM05D004167 ORTHO05D005012 1.5e-10 70.1 36 88.9
Ciclev10032053m.g Citrus clementina HOM05D004167 ORTHO05D005012 1.5e-10 70.1 36 86.1
CiPaw.02G183800 Carya illinoinensis HOM05D004167 ORTHO05D005012 1.9e-10 69.7 34 91.2
Duzib106G0246 Durio zibethinus HOM05D004167 ORTHO05D005012 1.9e-10 69.7 36 83.3
Manes.07G116100 Manihot esculenta HOM05D004167 ORTHO05D005012 3.3e-10 68.9 36 80.6
Nn2g10367 Nelumbo nucifera HOM05D004167 ORTHO05D005012 3.3e-10 68.9 36 86.1
Phvul.008G010800 Phaseolus vulgaris HOM05D004167 ORTHO05D005012 3.3e-10 68.9 36 86.1
Hund16089 Selenicereus undatus HOM05D004167 ORTHO05D005012 3.3e-10 68.9 35 88.6
TWI15G0568 Tripterygium wilfordii HOM05D004167 ORTHO05D005012 3.3e-10 68.9 36 80.6
TAR627G1156 Trochodendron aralioides HOM05D004167 ORTHO05D005012 3.3e-10 68.9 36 86.1
MSTRG.303 Avicennia marina HOM05D004167 ORTHO05D005012 4.3e-10 68.6 35 88.6
Psat3g163360 Pisum sativum HOM05D004167 ORTHO05D005012 4.3e-10 68.6 36 80.6
Potri.010G204000 Populus trichocarpa HOM05D004167 ORTHO05D005012 4.3e-10 68.6 36 80.6
TPR.G1356 Trifolium pratense HOM05D004167 ORTHO05D005012 4.3e-10 68.6 36 80.6
TAR633G1670 Trochodendron aralioides HOM05D004167 ORTHO05D005012 4.3e-10 68.6 36 86.1
Duzib114G0485 Durio zibethinus HOM05D004167 ORTHO05D005012 5.6e-10 68.2 36 80.6
PGSC0003DMG400023531 Solanum tuberosum HOM05D004167 ORTHO05D005012 5.6e-10 68.2 35 88.6
Dinv03048 Davidia involucrata HOM05D004167 ORTHO05D005012 7.4e-10 67.8 36 80.6
Sabra10G0157600 Salix brachista HOM05D004167 ORTHO05D005012 7.4e-10 67.8 36 80.6
Manes.10G030400 Manihot esculenta HOM05D004167 ORTHO05D005012 9.6e-10 67.4 36 77.8
Nitab4.5_0000065g0050 Nicotiana tabacum HOM05D004167 ORTHO05D005012 9.6e-10 67.4 66 51.5
CARHR134480 Cardamine hirsuta HOM05D004167 ORTHO05D005012 1.6e-09 66.6 36 75.0
Atru.chr12.453 Acer truncatum HOM05D004167 ORTHO05D005012 2.1e-09 66.2 36 83.3
Atru.chr12.475 Acer truncatum HOM05D004167 ORTHO05D005012 2.1e-09 66.2 36 83.3
AUR62039381 Chenopodium quinoa HOM05D004167 ORTHO05D005012 2.1e-09 66.2 37 78.4
Gohir.D05G301300 Gossypium hirsutum HOM05D004167 ORTHO05D005012 2.1e-09 66.2 36 80.6
Gorai.009G319400 Gossypium raimondii HOM05D004167 ORTHO05D005012 2.1e-09 66.2 36 80.6
Carub.0004s2167 Capsella rubella HOM05D004167 ORTHO05D005012 2.8e-09 65.9 35 77.1
Migut.F01510 Erythranthe guttata HOM05D004167 ORTHO05D005012 2.8e-09 65.9 35 85.7
Gohir.A05G301600 Gossypium hirsutum HOM05D004167 ORTHO05D005012 2.8e-09 65.9 36 80.6
Thecc.10G042500 Theobroma cacao HOM05D004167 ORTHO05D005012 2.8e-09 65.9 36 77.8
MBI14_g20108_MAGBIO Magnolia biondii HOM05D004167 ORTHO05D005012 3.7e-09 65.5 36 83.3
PGR142G3800 Punica granatum HOM05D004167 ORTHO05D005012 3.7e-09 65.5 36 72.2
GSVIVG01016551001 Vitis vinifera HOM05D004167 ORTHO05D005012 3.7e-09 65.5 36 83.3
ClCG09G019760 Citrullus lanatus HOM05D004167 ORTHO05D005012 4.8e-09 65.1 39 74.4
Eucgr.G02933 Eucalyptus grandis HOM05D004167 ORTHO05D005012 4.8e-09 65.1 36 77.8
Gohir.D10G228300 Gossypium hirsutum HOM05D004167 ORTHO05D005012 4.8e-09 65.1 36 77.8
Gorai.011G260700 Gossypium raimondii HOM05D004167 ORTHO05D005012 4.8e-09 65.1 36 77.8
EL10Ac2g04752 Beta vulgaris HOM05D004167 ORTHO05D005012 6.2e-09 64.7 35 80.0
Gohir.A10G218700 Gossypium hirsutum HOM05D004167 ORTHO05D005012 6.2e-09 64.7 36 77.8
TAR381G1570 Trochodendron aralioides HOM05D004167 ORTHO05D005012 6.2e-09 64.7 36 77.8
TAR623G0075 Trochodendron aralioides HOM05D004167 ORTHO05D005012 6.2e-09 64.7 36 80.6
BraA03t11449Z Brassica rapa HOM05D004167 ORTHO05D005012 8.2e-09 64.3 36 75.0
Cc02_g07870 Coffea canephora HOM05D004167 ORTHO05D005012 8.2e-09 64.3 36 80.6
Sc11g0007950 Simmondsia chinensis HOM05D004167 ORTHO05D005012 8.2e-09 64.3 35 77.1
THA.LOC104824275 Tarenaya hassleriana HOM05D004167 ORTHO05D005012 8.2e-09 64.3 36 75.0
CiPaw.01G287300 Carya illinoinensis HOM05D004167 ORTHO05D005012 1.1e-08 63.9 36 80.6
AUR62012082 Chenopodium quinoa HOM05D004167 ORTHO05D005012 1.1e-08 63.9 36 77.8
MD07G1198100 Malus domestica HOM05D004167 ORTHO05D005012 1.1e-08 63.9 36 77.8
Aqoxy5G03379 Aquilegia oxysepala HOM05D004167 ORTHO05D005012 1.4e-08 63.5 36 80.6
BolC4t22416H Brassica oleracea HOM05D004167 ORTHO05D005012 1.4e-08 63.5 36 75.0
AL4G37040 Arabidopsis lyrata HOM05D004167 ORTHO05D005012 1.8e-08 63.2 35 74.3
AT2G39630 Arabidopsis thaliana HOM05D004167 ORTHO05D005012 1.8e-08 63.2 35 74.3
BcaC01g05485 Brassica carinata HOM05D004167 ORTHO05D005012 1.8e-08 63.2 36 72.2
C03p26250 Brassica napus HOM05D004167 ORTHO05D005012 1.8e-08 63.2 36 72.2
BolC3t15010H Brassica oleracea HOM05D004167 ORTHO05D005012 1.8e-08 63.2 36 72.2
MELO3C023850.2 Cucumis melo HOM05D004167 ORTHO05D005012 3.1e-08 62.4 36 80.6
CsaV3_5G008030 Cucumis sativus L. HOM05D004167 ORTHO05D005012 3.1e-08 62.4 36 80.6
Lsat_1_v5_gn_2_119101 Lactuca sativa HOM05D004167 ORTHO05D005012 3.1e-08 62.4 36 80.6
PSO210G2827 Papaver somniferum HOM05D004167 ORTHO05D005012 3.1e-08 62.4 36 80.6
PSO210G3999 Papaver somniferum HOM05D004167 ORTHO05D005012 3.1e-08 62.4 36 80.6
unitig_899.g15067 Utricularia gibba HOM05D004167 ORTHO05D005012 3.1e-08 62.4 35 82.9
HanXRQChr14g0457931 Helianthus annuus HOM05D004167 ORTHO05D005012 4.0e-08 62.0 36 77.8
Lsat_1_v5_gn_9_65421 Lactuca sativa HOM05D004167 ORTHO05D005012 4.0e-08 62.0 35 80.0
Hund13759 Selenicereus undatus HOM05D004167 ORTHO05D005012 4.0e-08 62.0 35 80.0
Aa31LG5G20010 Aethionema arabicum HOM05D004167 ORTHO05D005012 5.3e-08 61.6 35 74.3
SEGI_18748 Sequoiadendron giganteum HOM05D004167 ORTHO05D005012 5.3e-08 61.6 36 77.8
CDE09G1012 Ceratophyllum demersum HOM05D004167 ORTHO05D005012 6.9e-08 61.2 47 59.6
ClCG07G003290 Citrullus lanatus HOM05D004167 ORTHO05D005012 6.9e-08 61.2 36 77.8
MD01G1133900 Malus domestica HOM05D004167 ORTHO05D005012 6.9e-08 61.2 36 77.8
vmacro10234 Vaccinium macrocarpon HOM05D004167 ORTHO05D005012 6.9e-08 61.2 28 96.4
DCAR_011694 Daucus carota HOM05D004167 ORTHO05D005012 9.0e-08 60.8 35 71.4
ECA232G2013 Erigeron canadensis HOM05D004167 ORTHO05D005012 9.0e-08 60.8 36 77.8
Thhalv10016901m.g Eutrema salsugineum HOM05D004167 ORTHO05D005012 9.0e-08 60.8 36 69.4
Os03g0821800 Oryza sativa ssp. japonica HOM05D004167 ORTHO05D005012 9.0e-08 60.8 36 80.6
Ah.16g102290 Amaranthus hybridus HOM05D004167 ORTHO05D005012 1.2e-07 60.5 35 77.1
A05p06810 Brassica napus HOM05D004167 ORTHO05D005012 1.2e-07 60.5 36 72.2
BraA05t19647Z Brassica rapa HOM05D004167 ORTHO05D005012 1.2e-07 60.5 36 72.2
CANSAT56G0736 Cannabis sativa HOM05D004167 ORTHO05D005012 1.2e-07 60.5 36 69.4
Zm00001eb062720 Zea mays HOM05D004167 ORTHO05D005012 1.2e-07 60.5 45 62.2
ATR0559G365 Amborella trichopoda HOM05D004167 ORTHO05D005012 1.5e-07 60.1 36 75.0
Sp4g21890 Schrenkiella parvula HOM05D004167 ORTHO05D005012 1.5e-07 60.1 36 72.2
Prupe.2G235200 Prunus persica HOM05D004167 ORTHO05D005012 2.0e-07 59.7 36 75.0
CsaV3_5G026660 Cucumis sativus L. HOM05D004167 ORTHO05D005012 2.6e-07 59.3 36 69.4
ECA238G2661 Erigeron canadensis HOM05D004167 ORTHO05D005012 2.6e-07 59.3 36 77.8
MELO3C021632.2 Cucumis melo HOM05D004167 ORTHO05D005012 3.4e-07 58.9 36 69.4
Sed0025003 Sechium edule HOM05D004167 ORTHO05D005012 3.4e-07 58.9 32 81.2
Sed0027549 Sechium edule HOM05D004167 ORTHO05D005012 3.4e-07 58.9 36 77.8
Sed0007402 Sechium edule HOM05D004167 ORTHO05D005012 1.3e-06 57.0 36 66.7
FvH4_7g22450 Fragaria vesca HOM05D004167 ORTHO05D005012 2.2e-06 56.2 36 72.2
FAN01G0242 Fragaria x ananassa HOM05D004167 ORTHO05D005012 2.2e-06 56.2 36 72.2
FAN01G1831 Fragaria x ananassa HOM05D004167 ORTHO05D005012 2.2e-06 56.2 36 72.2
FAN03G2888 Fragaria x ananassa HOM05D004167 ORTHO05D005012 2.2e-06 56.2 36 72.2
FAN06G2439 Fragaria x ananassa HOM05D004167 ORTHO05D005012 2.2e-06 56.2 36 72.2
FAN06G3201 Fragaria x ananassa HOM05D004167 ORTHO05D005012 2.2e-06 56.2 36 72.2
FAN10G4113 Fragaria x ananassa HOM05D004167 ORTHO05D005012 2.2e-06 56.2 36 72.2
PSO079G0067 Papaver somniferum HOM05D004167 ORTHO05D005012 2.9e-06 55.8 36 69.4
RcHm_v2.0_Chr1g0367061 Rosa chinensis HOM05D004167 ORTHO05D005012 2.9e-06 55.8 36 72.2
BcaC02g12089 Brassica carinata HOM05D004167 ORTHO05D005012 3.8e-06 55.5 36 66.7
C04p07990 Brassica napus HOM05D004167 ORTHO05D005012 3.8e-06 55.5 36 66.7
HPP92_020200 Vanilla planifolia HOM05D004167 ORTHO05D005012 3.8e-06 55.5 45 60.0


User provided reference genes

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