Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow3G2801 Salvia bowleyana HOM05D003605 ORTHO05D004292 3.1e-69 265.0 135 100.0
Eucgr.I00463 Eucalyptus grandis HOM05D003605 ORTHO05D004292 6.7e-19 97.8 121 49.6
Atru.chr1.3714 Acer truncatum HOM05D003605 ORTHO05D004292 1.5e-18 96.7 170 39.4
MSTRG.23329 Avicennia marina HOM05D003605 ORTHO05D004292 3.3e-18 95.5 168 38.7
MD15G1329000 Malus domestica HOM05D003605 ORTHO05D004292 3.3e-18 95.5 170 38.8
Oeu053564.1 Olea europaea HOM05D003605 ORTHO05D004292 3.3e-18 95.5 170 38.8
CiPaw.04G096600 Carya illinoinensis HOM05D003605 ORTHO05D004292 7.4e-18 94.4 170 38.2
CsaV3_4G000360 Cucumis sativus L. HOM05D003605 ORTHO05D004292 7.4e-18 94.4 170 38.8
QL93p0171_0010 Quercus lobata HOM05D003605 ORTHO05D004292 7.4e-18 94.4 171 38.6
TWI53G0811 Tripterygium wilfordii HOM05D003605 ORTHO05D004292 9.6e-18 94.0 170 38.8
TAR628G1078 Trochodendron aralioides HOM05D003605 ORTHO05D004292 9.6e-18 94.0 170 38.2
Nitab4.5_0000214g0060 Nicotiana tabacum HOM05D003605 ORTHO05D004292 1.3e-17 93.6 170 38.8
Rhsim08G0008800 Rhododendron simsii HOM05D003605 ORTHO05D004292 1.3e-17 93.6 170 37.1
PGSC0003DMG400027919 Solanum tuberosum HOM05D003605 ORTHO05D004292 1.3e-17 93.6 170 37.6
Solyc04g054710.3 Solanum lycopersicum HOM05D003605 ORTHO05D004292 1.6e-17 93.2 170 38.2
Sopen04g024460 Solanum pennellii HOM05D003605 ORTHO05D004292 1.6e-17 93.2 170 38.2
Peaxi162Scf00183g01421 Petunia axillaris HOM05D003605 ORTHO05D004292 2.1e-17 92.8 170 37.6
Thecc.01G106100 Theobroma cacao HOM05D003605 ORTHO05D004292 2.8e-17 92.4 170 37.1
MD01G1024400 Malus domestica HOM05D003605 ORTHO05D004292 3.6e-17 92.0 169 37.3
QL02p032424 Quercus lobata HOM05D003605 ORTHO05D004292 3.6e-17 92.0 169 38.5
COL.COLO4_09912 Corchorus olitorius HOM05D003605 ORTHO05D004292 4.8e-17 91.7 170 37.6
SGA_v2.0_scaffold34G13608 Striga asiatica HOM05D003605 ORTHO05D004292 4.8e-17 91.7 170 37.6
ClCG07G009440 Citrullus lanatus HOM05D003605 ORTHO05D004292 6.2e-17 91.3 170 37.6
Cc07_g15560 Coffea canephora HOM05D003605 ORTHO05D004292 6.2e-17 91.3 170 38.2
Migut.H02387 Erythranthe guttata HOM05D003605 ORTHO05D004292 6.2e-17 91.3 167 37.7
Gohir.A11G199633 Gossypium hirsutum HOM05D003605 ORTHO05D004292 6.2e-17 91.3 170 37.1
Gohir.D11G224500 Gossypium hirsutum HOM05D003605 ORTHO05D004292 6.2e-17 91.3 170 37.1
Sed0022642 Sechium edule HOM05D003605 ORTHO05D004292 6.2e-17 91.3 169 38.5
CAN.G878.8 Capsicum annuum HOM05D003605 ORTHO05D004292 1.1e-16 90.5 170 37.6
DCAR_032171 Daucus carota HOM05D003605 ORTHO05D004292 1.1e-16 90.5 167 38.3
Nitab4.5_0004386g0030 Nicotiana tabacum HOM05D003605 ORTHO05D004292 1.1e-16 90.5 170 38.2
Hma1.2p1_0011F.1_g007160 Hydrangea macrophylla HOM05D003605 ORTHO05D004292 1.4e-16 90.1 170 37.6
Gorai.007G241800 Gossypium raimondii HOM05D003605 ORTHO05D004292 1.8e-16 89.7 170 37.1
TAR376G0746 Trochodendron aralioides HOM05D003605 ORTHO05D004292 1.8e-16 89.7 170 37.1
CiPaw.03G138800 Carya illinoinensis HOM05D003605 ORTHO05D004292 2.4e-16 89.4 170 37.6
Manes.12G138300 Manihot esculenta HOM05D003605 ORTHO05D004292 2.4e-16 89.4 170 37.6
QL06p050316 Quercus lobata HOM05D003605 ORTHO05D004292 2.4e-16 89.4 168 37.5
Rhsim04G0097000 Rhododendron simsii HOM05D003605 ORTHO05D004292 2.4e-16 89.4 170 37.1
RhsimUnG0212800 Rhododendron simsii HOM05D003605 ORTHO05D004292 2.4e-16 89.4 170 37.1
GSVIVG01022163001 Vitis vinifera HOM05D003605 ORTHO05D004292 2.4e-16 89.4 170 38.2
Duzib147G1273 Durio zibethinus HOM05D003605 ORTHO05D004292 3.1e-16 89.0 170 37.1
Duzib264G0977 Durio zibethinus HOM05D003605 ORTHO05D004292 3.1e-16 89.0 170 36.5
Prupe.6G179700 Prunus persica HOM05D003605 ORTHO05D004292 3.1e-16 89.0 164 38.4
ECA232G1065 Erigeron canadensis HOM05D003605 ORTHO05D004292 4.0e-16 88.6 170 37.1
Sabra07G0072900 Salix brachista HOM05D003605 ORTHO05D004292 4.0e-16 88.6 170 37.6
PSO210G3598 Papaver somniferum HOM05D003605 ORTHO05D004292 6.9e-16 87.8 170 35.3
RcHm_v2.0_Chr2g0115381 Rosa chinensis HOM05D003605 ORTHO05D004292 6.9e-16 87.8 166 36.1
Glyma.05G181000 Glycine max HOM05D003605 ORTHO05D004292 9.0e-16 87.4 170 37.6
Psat7g053000 Pisum sativum HOM05D003605 ORTHO05D004292 9.0e-16 87.4 170 36.5
PGR004G1268 Punica granatum HOM05D003605 ORTHO05D004292 9.0e-16 87.4 170 35.9
Migut.L00103 Erythranthe guttata HOM05D003605 ORTHO05D004292 1.2e-15 87.0 165 37.0
FvH4_1g21500 Fragaria vesca HOM05D003605 ORTHO05D004292 1.2e-15 87.0 166 36.1
FAN19G1223 Fragaria x ananassa HOM05D003605 ORTHO05D004292 1.2e-15 87.0 166 36.1
Gohir.A13G028300 Gossypium hirsutum HOM05D003605 ORTHO05D004292 1.2e-15 87.0 170 35.3
Gohir.D13G027000 Gossypium hirsutum HOM05D003605 ORTHO05D004292 1.2e-15 87.0 170 35.3
Phvul.002G262100 Phaseolus vulgaris HOM05D003605 ORTHO05D004292 1.2e-15 87.0 170 37.1
Potri.005G079200 Populus trichocarpa HOM05D003605 ORTHO05D004292 1.2e-15 87.0 170 37.6
VMungo0251G1785 Vigna mungo HOM05D003605 ORTHO05D004292 1.2e-15 87.0 170 37.1
Ciclev10025279m.g Citrus clementina HOM05D003605 ORTHO05D004292 1.5e-15 86.7 170 36.5
Glyma.08G138800 Glycine max HOM05D003605 ORTHO05D004292 1.5e-15 86.7 170 36.5
Nn5g29013 Nelumbo nucifera HOM05D003605 ORTHO05D004292 2.0e-15 86.3 170 36.5
TWI77G0071 Tripterygium wilfordii HOM05D003605 ORTHO05D004292 2.0e-15 86.3 170 37.1
CDE03G0458 Ceratophyllum demersum HOM05D003605 ORTHO05D004292 2.6e-15 85.9 170 35.3
MELO3C017998.2 Cucumis melo HOM05D003605 ORTHO05D004292 2.6e-15 85.9 190 34.7
Ah.04g164730 Amaranthus hybridus HOM05D003605 ORTHO05D004292 3.4e-15 85.5 170 35.9
FAN26G2714 Fragaria x ananassa HOM05D003605 ORTHO05D004292 4.5e-15 85.1 171 35.1
Sc04g0003290 Simmondsia chinensis HOM05D003605 ORTHO05D004292 5.8e-15 84.7 170 35.9
Sed0024954 Sechium edule HOM05D003605 ORTHO05D004292 7.6e-15 84.3 170 37.1
GSVIVG01008982001 Vitis vinifera HOM05D003605 ORTHO05D004292 1.3e-14 83.6 169 35.5
Lj4g0017562 Lotus japonicus HOM05D003605 ORTHO05D004292 1.7e-14 83.2 170 35.3
TPR.G2157 Trifolium pratense HOM05D003605 ORTHO05D004292 1.7e-14 83.2 170 34.7
HanXRQChr15g0484161 Helianthus annuus HOM05D003605 ORTHO05D004292 2.2e-14 82.8 170 35.3
arahy.Tifrunner.gnm1.ann1.RRG4JE Arachis hypogaea HOM05D003605 ORTHO05D004292 2.9e-14 82.4 170 35.3
AUR62000485 Chenopodium quinoa HOM05D003605 ORTHO05D004292 2.9e-14 82.4 166 35.5
Medtr7g106830 Medicago truncatula HOM05D003605 ORTHO05D004292 2.9e-14 82.4 165 35.8
EL10Ac5g11501 Beta vulgaris HOM05D003605 ORTHO05D004292 3.8e-14 82.0 170 35.3
Rhsim08G0008700 Rhododendron simsii HOM05D003605 ORTHO05D004292 3.8e-14 82.0 169 34.9
Lsat_1_v5_gn_4_141440 Lactuca sativa HOM05D003605 ORTHO05D004292 4.9e-14 81.6 164 35.4
PSO447G0276 Papaver somniferum HOM05D003605 ORTHO05D004292 4.9e-14 81.6 170 34.1
Potri.007G088426 Populus trichocarpa HOM05D003605 ORTHO05D004292 4.9e-14 81.6 170 35.9
arahy.Tifrunner.gnm1.ann1.8A1TPW Arachis hypogaea HOM05D003605 ORTHO05D004292 6.4e-14 81.3 170 35.3
AUR62033748 Chenopodium quinoa HOM05D003605 ORTHO05D004292 6.4e-14 81.3 169 34.9
ECA232G4497 Erigeron canadensis HOM05D003605 ORTHO05D004292 6.4e-14 81.3 165 35.2
Medtr8g091280 Medicago truncatula HOM05D003605 ORTHO05D004292 6.4e-14 81.3 170 35.3
Eucgr.I00395 Eucalyptus grandis HOM05D003605 ORTHO05D004292 8.4e-14 80.9 170 34.1
ATR0564G471 Amborella trichopoda HOM05D003605 ORTHO05D004292 1.1e-13 80.5 170 33.5
arahy.Tifrunner.gnm1.ann1.28TKL1 Arachis hypogaea HOM05D003605 ORTHO05D004292 1.1e-13 80.5 166 34.9
Hund02342 Selenicereus undatus HOM05D003605 ORTHO05D004292 1.1e-13 80.5 170 35.3
HPP92_016106 Vanilla planifolia HOM05D003605 ORTHO05D004292 1.1e-13 80.5 187 33.7
Lj6g0022585 Lotus japonicus HOM05D003605 ORTHO05D004292 1.4e-13 80.1 165 34.5
Lalb_Chr07g0185001 Lupinus albus HOM05D003605 ORTHO05D004292 1.9e-13 79.7 163 35.6
VMungo1383G1191 Vigna mungo HOM05D003605 ORTHO05D004292 1.9e-13 79.7 162 34.0
Eucgr.I00398 Eucalyptus grandis HOM05D003605 ORTHO05D004292 2.4e-13 79.3 177 34.5
VMungo1383G3703 Vigna mungo HOM05D003605 ORTHO05D004292 2.4e-13 79.3 165 34.5
Os01g0871300 Oryza sativa ssp. japonica HOM05D003605 ORTHO05D004292 7.1e-13 77.8 167 32.9
AUR62006827 Chenopodium quinoa HOM05D003605 ORTHO05D004292 9.3e-13 77.4 167 32.9
AUR62029939 Chenopodium quinoa HOM05D003605 ORTHO05D004292 9.3e-13 77.4 169 34.3
SEGI_31864 Sequoiadendron giganteum HOM05D003605 ORTHO05D004292 9.3e-13 77.4 168 32.1
Aa31LG7G14510 Aethionema arabicum HOM05D003605 ORTHO05D004292 1.2e-12 77.0 170 34.1
THA.LOC104824869 Tarenaya hassleriana HOM05D003605 ORTHO05D004292 1.2e-12 77.0 169 32.5
Phvul.001G250500 Phaseolus vulgaris HOM05D003605 ORTHO05D004292 1.6e-12 76.6 159 34.6
vmacro09115 Vaccinium macrocarpon HOM05D003605 ORTHO05D004292 1.6e-12 76.6 49 75.5
Lsat_1_v5_gn_4_141381 Lactuca sativa HOM05D003605 ORTHO05D004292 2.1e-12 76.3 165 33.9
Sabra05G0065200 Salix brachista HOM05D006521 ORTHO05D004292 2.1e-12 76.3 50 78.0
CANSAT01G2754 Cannabis sativa HOM05D003605 ORTHO05D004292 2.7e-12 75.9 164 32.9
Phvul.001G250600 Phaseolus vulgaris HOM05D003605 ORTHO05D004292 2.7e-12 75.9 162 33.3
Carub.0004s0139 Capsella rubella HOM05D003605 ORTHO05D004292 4.6e-12 75.1 170 32.9
Glyma.11G238300 Glycine max HOM05D003605 ORTHO05D004292 4.6e-12 75.1 162 34.0
Duzib187G1314 Durio zibethinus HOM05D003605 ORTHO05D004292 6.0e-12 74.7 47 76.6
FAN23G1157 Fragaria x ananassa HOM05D003605 ORTHO05D004292 6.0e-12 74.7 46 78.3
Oeu034199.1 Olea europaea HOM05D003605 ORTHO05D004292 7.9e-12 74.3 50 72.0
AL4G11730 Arabidopsis lyrata HOM05D003605 ORTHO05D004292 1.0e-11 73.9 170 32.4
AT2G22250 Arabidopsis thaliana HOM05D003605 ORTHO05D004292 1.0e-11 73.9 170 32.4
HanXRQChr09g0260211 Helianthus annuus HOM05D003605 ORTHO05D004292 1.3e-11 73.6 163 31.9
SHI11587 Sapria himalayana HOM05D003605 ORTHO05D004292 1.3e-11 73.6 167 33.5
BcaC02g08723 Brassica carinata HOM05D003605 ORTHO05D004292 1.8e-11 73.2 170 32.9
CARHR113480 Cardamine hirsuta HOM05D003605 ORTHO05D004292 2.3e-11 72.8 170 32.4
Thhalv10000093m.g Eutrema salsugineum HOM05D003605 ORTHO05D004292 3.0e-11 72.4 170 31.8
arahy.Tifrunner.gnm1.ann1.T2CRY6 Arachis hypogaea HOM05D003605 ORTHO05D004292 3.9e-11 72.0 163 31.9
BcaB08g35052 Brassica carinata HOM05D003605 ORTHO05D004292 3.9e-11 72.0 170 31.8
BcaC02g08676 Brassica carinata HOM05D003605 ORTHO05D004292 3.9e-11 72.0 170 32.4
A04p16770 Brassica napus HOM05D003605 ORTHO05D004292 3.9e-11 72.0 170 32.4
BraA04t17309Z Brassica rapa HOM05D003605 ORTHO05D004292 3.9e-11 72.0 170 32.4
Zm00001eb348660 Zea mays HOM05D003605 ORTHO05D004292 3.9e-11 72.0 170 31.8
Sp4g01300 Schrenkiella parvula HOM05D003605 ORTHO05D004292 5.1e-11 71.6 170 31.8
EL10Ac4g09572 Beta vulgaris HOM05D003605 ORTHO05D004292 8.7e-11 70.9 183 30.6
BcaC07g41087 Brassica carinata HOM05D003605 ORTHO05D004292 1.1e-10 70.5 170 31.2
CARHR231470 Cardamine hirsuta HOM05D003605 ORTHO05D004292 7.4e-10 67.8 163 31.3
Aqoxy5G00902 Aquilegia oxysepala HOM05D003605 ORTHO05D004292 9.6e-10 67.4 50 66.0
CANSAT01G1177 Cannabis sativa HOM05D003605 ORTHO05D004292 2.8e-09 65.9 164 29.3
Lalb_Chr13g0296061 Lupinus albus HOM05D003605 ORTHO05D004292 2.8e-09 65.9 43 76.7
FAN23G2759 Fragaria x ananassa HOM05D003605 ORTHO05D004292 4.8e-09 65.1 38 76.3
CBR_g81019 Chara braunii HOM05D003605 ORTHO05D004292 8.2e-09 64.3 170 29.4
RhsimUnG0163700 Rhododendron simsii HOM05D003605 ORTHO05D004292 1.1e-08 63.9 28 100.0
HanXRQChr09g0260231 Helianthus annuus HOM05D003605 ORTHO05D004292 1.8e-08 63.2 44 65.9
arahy.Tifrunner.gnm1.ann1.K33YLS Arachis hypogaea HOM05D003605 ORTHO05D004292 2.4e-08 62.8 33 81.8
CSS0014678 Camellia sinensis var. sinensis HOM05D003605 ORTHO05D004292 2.4e-08 62.8 28 96.4
Oeu032173.1 Olea europaea HOM05D003605 ORTHO05D004292 2.4e-08 62.8 28 96.4
Pp3c1_16910 Physcomitrium patens HOM05D003605 ORTHO05D004292 2.4e-08 62.8 165 29.1
CSS0003079 Camellia sinensis var. sinensis HOM05D003605 ORTHO05D004292 4.0e-08 62.0 30 86.7
Hma1.2p1_0614F.1_g189540 Hydrangea macrophylla HOM05D003605 ORTHO05D004292 4.0e-08 62.0 28 92.9
SGA_v2.0_scaffold47G17751 Striga asiatica HOM05D003605 ORTHO05D004292 4.0e-08 62.0 28 92.9
Atru.chr4.227 Acer truncatum HOM05D003605 ORTHO05D004292 6.9e-08 61.2 29 89.7
Cpa.g.sc20.227 Carica papaya HOM05D003605 ORTHO05D004292 6.9e-08 61.2 29 89.7
vmacro18616 Vaccinium macrocarpon HOM05D003605 ORTHO05D004292 1.2e-07 60.5 28 92.9
Zm00001eb146400 Zea mays HOM05D003605 ORTHO05D004292 1.2e-07 60.5 28 92.9
AL5G24220 Arabidopsis lyrata HOM05D003605 ORTHO05D004292 2.0e-07 59.7 31 80.6
GSVIVG01015252001 Vitis vinifera HOM05D003605 ORTHO05D004292 5.8e-07 58.2 27 88.9
SMO351G0219 Selaginella moellendorffii HOM05D003605 ORTHO05D004292 7.6e-07 57.8 163 27.0
Glyma.11G238200 Glycine max HOM05D003605 ORTHO05D004292 1.0e-06 57.4 27 88.9
Mapoly0058s0104 Marchantia polymorpha HOM05D003605 ORTHO05D004292 1.0e-06 57.4 163 29.4
AagrBONN_evm.TU.Sc2ySwM_344.2348 Anthoceros agrestis HOM05D003605 ORTHO05D004292 1.3e-06 57.0 88 44.3
Sabra18G0053200 Salix brachista HOM05D003605 ORTHO05D004078 1.3e-06 57.0 29 86.2
Sabra18G0053400 Salix brachista HOM05D003605 ORTHO05D004078 1.3e-06 57.0 29 86.2
Gorai.013G030300 Gossypium raimondii HOM05D003605 ORTHO05D004292 1.7e-06 56.6 28 82.1
Sabra18G0053700 Salix brachista HOM05D003605 ORTHO05D004078 1.7e-06 56.6 28 89.3
arahy.Tifrunner.gnm1.ann1.0BA9QN Arachis hypogaea HOM05D003605 ORTHO05D004292 2.2e-06 56.2 32 71.9
Sabra18G0053800 Salix brachista HOM05D003605 ORTHO05D004292 2.2e-06 56.2 29 86.2
HanXRQChr06g0177451 Helianthus annuus HOM05D000518 ORTHO05D000737 4.9e-06 55.1 39 64.1
GSVIVG01020940001 Vitis vinifera HOM05D003605 ORTHO05D004292 4.9e-06 55.1 27 85.2
MELO3C030491.2 Cucumis melo HOM05D003605 ORTHO05D004292 6.5e-06 54.7 37 67.6


User provided reference genes

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