Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow3G2787 Salvia bowleyana HOM05D001886 ORTHO05D005666 2.8e-236 821.6 436 100.0
Migut.J00351 Erythranthe guttata HOM05D001886 ORTHO05D005666 6.6e-193 677.6 429 83.2
MSTRG.5681 Avicennia marina HOM05D001886 ORTHO05D005666 5.4e-187 657.9 431 81.0
Oeu036169.1 Olea europaea HOM05D001886 ORTHO05D005666 8.1e-167 590.9 428 72.0
Oeu060049.1 Olea europaea HOM05D001886 ORTHO05D005666 1.4e-166 590.1 419 76.8
QL07p047480 Quercus lobata HOM05D001886 ORTHO05D005666 2.2e-164 582.8 431 72.2
QL05p010709 Quercus lobata HOM05D001886 ORTHO05D005666 4.9e-164 581.6 431 71.9
Solyc09g010470.3 Solanum lycopersicum HOM05D001886 ORTHO05D005666 1.4e-163 580.1 432 71.1
Sopen09g005210 Solanum pennellii HOM05D001886 ORTHO05D005666 4.2e-163 578.6 432 70.6
PGSC0003DMG400008924 Solanum tuberosum HOM05D001886 ORTHO05D005666 9.2e-163 577.4 432 70.6
CSS0014030 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 1.2e-162 577.0 430 72.1
DCAR_009246 Daucus carota HOM05D001886 ORTHO05D005666 1.2e-162 577.0 428 70.6
Ciclev10011745m.g Citrus clementina HOM05D001886 ORTHO05D005666 2.1e-162 576.2 428 71.5
Hma1.2p1_1481F.1_g286150 Hydrangea macrophylla HOM05D001886 ORTHO05D005666 1.3e-161 573.5 432 70.8
CAN.G97.10 Capsicum annuum HOM05D001886 ORTHO05D005666 1.7e-161 573.2 431 70.3
Oeu036166.1 Olea europaea HOM05D001886 ORTHO05D005666 1.7e-161 573.2 430 70.7
Cfa017420 Carpinus fangiana HOM05D001886 ORTHO05D005666 3.9e-161 572.0 431 71.2
TAR633G2154 Trochodendron aralioides HOM05D001886 ORTHO05D005666 1.9e-160 569.7 427 71.0
Thecc.05G043700 Theobroma cacao HOM05D001886 ORTHO05D005666 1.3e-159 567.0 428 69.4
CiPaw.09G189500 Carya illinoinensis HOM05D001886 ORTHO05D005666 2.1e-159 566.2 431 71.2
Haze_20750 Corylus avellana HOM05D001886 ORTHO05D005666 2.8e-159 565.8 447 69.4
CSS0019310 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 2.4e-158 562.8 429 70.9
CSS0002297 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 6.9e-158 561.2 432 70.4
Lsat_1_v5_gn_2_111601 Lactuca sativa HOM05D001886 ORTHO05D005666 6.9e-158 561.2 431 69.6
Prupe.6G251100 Prunus persica HOM05D001886 ORTHO05D005666 6.9e-158 561.2 426 71.1
ECA238G4795 Erigeron canadensis HOM05D001886 ORTHO05D005666 9.0e-158 560.8 432 68.8
MD04G1123400 Malus domestica HOM05D001886 ORTHO05D005666 7.6e-157 557.8 427 70.0
COL.COLO4_14849 Corchorus olitorius HOM05D001886 ORTHO05D005666 9.9e-157 557.4 428 68.7
Duzib093G1847 Durio zibethinus HOM05D001886 ORTHO05D005666 1.7e-156 556.6 428 68.5
unitig_578.g15699 Utricularia gibba HOM05D001886 ORTHO05D005666 1.7e-156 556.6 431 68.2
Gohir.A09G158000 Gossypium hirsutum HOM05D001886 ORTHO05D005666 2.2e-156 556.2 427 68.9
FAN05G4892 Fragaria x ananassa HOM05D001886 ORTHO05D005666 2.9e-156 555.8 431 69.4
Gorai.006G174800 Gossypium raimondii HOM05D001886 ORTHO05D005666 8.4e-156 554.3 427 69.1
Gohir.D09G153300 Gossypium hirsutum HOM05D001886 ORTHO05D005666 1.9e-155 553.1 427 68.9
FvH4_6g14211 Fragaria vesca HOM05D001886 ORTHO05D005666 3.2e-155 552.4 432 69.4
Sabra06G0063300 Salix brachista HOM05D001886 ORTHO05D005666 5.4e-155 551.6 433 68.6
GSVIVG01025523001 Vitis vinifera HOM05D001886 ORTHO05D005666 1.2e-154 550.4 431 68.4
RcHm_v2.0_Chr3g0467171 Rosa chinensis HOM05D001886 ORTHO05D005666 2.1e-154 549.7 429 69.5
Manes.09G087100 Manihot esculenta HOM05D001886 ORTHO05D005666 6.0e-154 548.1 428 68.0
TWI74G1177 Tripterygium wilfordii HOM05D001886 ORTHO05D005666 1.0e-153 547.4 428 68.0
HanXRQChr07g0196201 Helianthus annuus HOM05D001886 ORTHO05D005666 1.3e-153 547.0 435 67.4
Aqoxy2G02037 Aquilegia oxysepala HOM05D001886 ORTHO05D005666 5.1e-153 545.0 411 70.6
MD12G1139300 Malus domestica HOM05D001886 ORTHO05D005666 6.6e-153 544.7 426 68.5
THA.LOC104823252 Tarenaya hassleriana HOM05D001886 ORTHO05D005666 1.9e-152 543.1 428 67.3
CANSAT35G0217 Cannabis sativa HOM05D001886 ORTHO05D005666 5.6e-152 541.6 431 67.5
Carub.0003s0857 Capsella rubella HOM05D001886 ORTHO05D005666 2.1e-151 539.7 429 66.9
Potri.006G083700 Populus trichocarpa HOM05D001886 ORTHO05D005666 3.1e-150 535.8 431 66.8
AL3G20650 Arabidopsis lyrata HOM05D001886 ORTHO05D005666 5.3e-150 535.0 430 66.5
AT3G09470 Arabidopsis thaliana HOM05D001886 ORTHO05D005666 5.3e-150 535.0 430 66.5
MBI14_g24315_MAGBIO Magnolia biondii HOM05D001886 ORTHO05D005666 3.4e-149 532.3 427 66.3
Nitab4.5_0002077g0040 Nicotiana tabacum HOM05D001886 ORTHO05D005666 3.4e-149 532.3 432 66.9
Sc20g0004960 Simmondsia chinensis HOM05D001886 ORTHO05D005666 3.4e-149 532.3 426 65.0
Eucgr.K03155 Eucalyptus grandis HOM05D001886 ORTHO05D005666 5.8e-149 531.6 437 66.6
Thhalv10020764m.g Eutrema salsugineum HOM05D001886 ORTHO05D005666 3.8e-148 528.9 428 66.6
Lj2A99T56 Lonicera japonica HOM05D001886 ORTHO05D005666 1.9e-147 526.6 369 73.2
Aa31LG3G1960 Aethionema arabicum HOM05D001886 ORTHO05D005666 7.1e-147 524.6 434 65.4
C05p58560 Brassica napus HOM05D001886 ORTHO05D005666 1.2e-146 523.9 431 65.4
Sp3g07840 Schrenkiella parvula HOM05D001886 ORTHO05D005666 1.6e-146 523.5 428 65.4
Lalb_Chr01g0019241 Lupinus albus HOM05D001886 ORTHO05D005666 3.5e-146 522.3 431 65.4
Hma1.2p1_1707F.1_g298500 Hydrangea macrophylla HOM05D001886 ORTHO05D005666 4.6e-146 521.9 463 63.7
PGR004G0312 Punica granatum HOM05D001886 ORTHO05D005666 4.6e-146 521.9 431 66.4
Atru.chr8.1947 Acer truncatum HOM05D001886 ORTHO05D005666 6.0e-146 521.5 428 65.7
BolC5t34506H Brassica oleracea HOM05D001886 ORTHO05D005666 1.0e-145 520.8 431 65.4
BraA05t22734Z Brassica rapa HOM05D001886 ORTHO05D005666 1.0e-145 520.8 431 65.4
A05p39530 Brassica napus HOM05D001886 ORTHO05D005666 1.8e-145 520.0 431 65.4
MELO3C009272.2 Cucumis melo HOM05D001886 ORTHO05D005666 4.3e-144 515.4 429 64.1
ClCG10G020980 Citrullus lanatus HOM05D001886 ORTHO05D005666 7.4e-144 514.6 429 65.0
Medtr7g099890 Medicago truncatula HOM05D001886 ORTHO05D005666 7.4e-144 514.6 429 66.0
ClCG00G003200 Citrullus lanatus HOM05D001886 ORTHO05D005666 9.6e-144 514.2 429 64.8
PGR004G0538 Punica granatum HOM05D001886 ORTHO05D005666 1.3e-143 513.8 431 65.4
PSO339G5853 Papaver somniferum HOM05D001886 ORTHO05D005666 2.8e-143 512.7 439 63.6
Hund10629 Selenicereus undatus HOM05D001886 ORTHO05D005666 3.7e-143 512.3 428 63.1
Cc06_g02890 Coffea canephora HOM05D001886 ORTHO05D005666 6.2e-143 511.5 437 63.6
CsaV3_3G035030 Cucumis sativus L. HOM05D001886 ORTHO05D005666 8.1e-143 511.1 429 63.9
BcaC05g29675 Brassica carinata HOM05D001886 ORTHO05D005666 1.8e-142 510.0 435 65.1
Prupe.6G251000 Prunus persica HOM05D001886 ORTHO05D005666 3.1e-142 509.2 429 63.6
FAN09G1438 Fragaria x ananassa HOM05D001886 ORTHO05D005666 5.3e-142 508.4 514 57.4
TPR.G21472 Trifolium pratense HOM05D002608 ORTHO05D005666 1.5e-141 506.9 411 65.7
Ca_08782_v3 Cicer arietinum L. HOM05D001886 ORTHO05D005666 2.6e-141 506.1 429 64.1
Sed0005778 Sechium edule HOM05D001886 ORTHO05D005666 2.6e-141 506.1 427 64.2
THA.LOC104816289 Tarenaya hassleriana HOM05D001886 ORTHO05D005666 4.5e-141 505.4 424 63.2
ATR0559G352 Amborella trichopoda HOM05D001886 ORTHO05D005666 1.0e-140 504.2 423 63.1
AUR62041035 Chenopodium quinoa HOM05D001886 ORTHO05D005666 6.4e-140 501.5 429 62.5
Lj1g0000746 Lotus japonicus HOM05D001886 ORTHO05D005666 6.4e-140 501.5 431 63.3
Dinv35628 Davidia involucrata HOM05D001886 ORTHO05D005666 1.4e-139 500.4 424 66.5
PSO339G4978 Papaver somniferum HOM05D001886 ORTHO05D005666 4.2e-139 498.8 424 63.9
PSO339G5613 Papaver somniferum HOM05D001886 ORTHO05D005666 4.2e-139 498.8 424 63.9
Phvul.001G169800 Phaseolus vulgaris HOM05D001886 ORTHO05D005666 1.2e-138 497.3 428 62.6
VMungo1383G3275 Vigna mungo HOM05D001886 ORTHO05D005666 1.2e-138 497.3 428 62.6
Hma1.2p1_1065F.1_g253710 Hydrangea macrophylla HOM05D001886 ORTHO05D005666 1.6e-138 496.9 440 64.3
MD04G1123300 Malus domestica HOM05D001886 ORTHO05D005666 2.1e-138 496.5 426 62.9
Medtr7g099870 Medicago truncatula HOM05D001886 ORTHO05D005666 4.6e-138 495.4 414 64.0
arahy.Tifrunner.gnm1.ann1.LM62V2 Arachis hypogaea HOM05D001886 ORTHO05D005666 1.3e-137 493.8 429 63.2
FAN09G0883 Fragaria x ananassa HOM05D002354 ORTHO05D005666 2.3e-137 493.0 434 61.3
Glyma.03G172100 Glycine max HOM05D001886 ORTHO05D005666 2.3e-137 493.0 430 61.6
FvH4_6g14220 Fragaria vesca HOM05D001886 ORTHO05D005666 5.1e-137 491.9 432 61.3
Medtr7g099910 Medicago truncatula HOM05D001886 ORTHO05D005666 8.7e-137 491.1 432 61.3
Glyma.19G173000 Glycine max HOM05D001886 ORTHO05D005666 1.1e-136 490.7 430 62.3
FAN14G0919 Fragaria x ananassa HOM05D001886 ORTHO05D005666 1.3e-135 487.3 432 60.9
RcHm_v2.0_Chr3g0467181 Rosa chinensis HOM05D001886 ORTHO05D005666 1.6e-135 486.9 432 60.4
Ah.12g062350 Amaranthus hybridus HOM05D001886 ORTHO05D005666 3.7e-135 485.7 429 60.6
PSO648G0053 Papaver somniferum HOM05D001886 ORTHO05D005666 6.2e-135 485.0 423 61.9
SGA_v2.0_scaffold126G33811 Striga asiatica HOM05D001886 ORTHO05D005666 3.1e-134 482.6 436 63.3
Psat3g049200 Pisum sativum HOM05D001886 ORTHO05D005666 1.2e-133 480.7 413 63.0
Peaxi162Scf00039g01233 Petunia axillaris HOM05D001886 ORTHO05D005666 2.6e-133 479.6 425 63.3
Lj1g0019565 Lotus japonicus HOM05D001886 ORTHO05D005666 5.8e-133 478.4 413 62.5
Lj1g0014450 Lotus japonicus HOM05D001886 ORTHO05D005666 1.7e-132 476.9 431 60.1
Rhsim04G0155900 Rhododendron simsii HOM05D001886 ORTHO05D005666 3.8e-132 475.7 472 58.5
Sed0018380 Sechium edule HOM05D001886 ORTHO05D005666 6.5e-132 474.9 388 63.7
Lalb_Chr20g0113251 Lupinus albus HOM05D001886 ORTHO05D005666 2.1e-130 469.9 432 58.6
Nn2g10428 Nelumbo nucifera HOM05D001886 ORTHO05D005666 6.1e-130 468.4 431 61.7
Os12g0566900 Oryza sativa ssp. japonica HOM05D001886 ORTHO05D005666 1.3e-129 467.2 405 62.5
Zm00001eb028780 Zea mays HOM05D001886 ORTHO05D005666 2.3e-129 466.5 430 60.0
FAN09G1880 Fragaria x ananassa HOM05D001886 ORTHO05D005666 6.7e-129 464.9 434 59.2
arahy.Tifrunner.gnm1.ann1.QN2KEZ Arachis hypogaea HOM05D001886 ORTHO05D005666 1.3e-127 460.7 429 60.6
CDE07G1313 Ceratophyllum demersum HOM05D001886 ORTHO05D005666 7.2e-123 444.9 431 55.7
HPP92_018059 Vanilla planifolia HOM05D001886 ORTHO05D005666 1.2e-122 444.1 437 57.2
CSS0035971 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 2.4e-118 429.9 433 59.8
Actinidia05302 Actinidia chinensis HOM05D001886 ORTHO05D005666 9.1e-118 427.9 431 57.1
AUR62041759 Chenopodium quinoa HOM05D001886 ORTHO05D005666 1.9e-115 420.2 430 55.6
Nitab4.5_0003267g0040 Nicotiana tabacum HOM05D001886 ORTHO05D005666 2.0e-112 410.2 431 55.9
Dinv37200 Davidia involucrata HOM05D001886 ORTHO05D005666 2.6e-109 399.8 313 70.6
vmacro08662 Vaccinium macrocarpon HOM05D001886 ORTHO05D005666 5.5e-107 392.1 509 48.1
Lj2A2G29 Lonicera japonica HOM05D001886 ORTHO05D005666 2.6e-104 383.3 379 59.9
TPR.G21468 Trifolium pratense HOM05D001886 ORTHO05D005666 1.2e-101 374.4 344 60.5
EL10As1g23100 Beta vulgaris HOM05D001886 ORTHO05D005666 3.5e-101 372.9 318 62.9
Psat3g049040 Pisum sativum HOM05D001886 ORTHO05D005666 4.7e-98 362.5 300 64.7
Migut.O00944 Erythranthe guttata HOM05D001886 ORTHO05D005666 2.2e-92 343.6 321 62.0
Mapoly0179s0003 Marchantia polymorpha HOM05D001886 ORTHO05D005666 2.8e-87 326.6 405 44.0
Pp3c8_1230 Physcomitrium patens HOM05D001886 ORTHO05D005666 3.1e-86 323.2 406 44.8
SEGI_05360 Sequoiadendron giganteum HOM05D001886 ORTHO05D005666 8.6e-84 315.1 276 59.8
Gohir.D04G119800 Gossypium hirsutum HOM05D001886 ORTHO05D005666 8.9e-73 278.5 415 44.3
CARHR083880 Cardamine hirsuta HOM05D001886 ORTHO05D005666 2.2e-71 273.9 248 60.9
Actinidia13133 Actinidia chinensis HOM05D001886 ORTHO05D005666 1.1e-70 271.6 178 74.7
Actinidia13134 Actinidia chinensis HOM05D001886 ORTHO05D005666 1.5e-67 261.2 197 70.6
CARHR083890 Cardamine hirsuta HOM05D001886 ORTHO05D005666 1.9e-67 260.8 177 75.1
HPP92_018052 Vanilla planifolia HOM05D001886 ORTHO05D005666 1.1e-59 235.0 192 63.0
Os12g0566800 Oryza sativa ssp. japonica HOM05D001886 ORTHO05D005666 5.8e-56 222.6 176 61.9
ATR0559G335 Amborella trichopoda HOM05D001886 ORTHO05D005666 1.5e-51 208.0 151 68.9
CSS0044683 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 2.8e-50 203.8 162 68.5
CSS0017297 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 2.8e-42 177.2 149 67.1
AagrBONN_evm.TU.Sc2ySwM_362.1966 Anthoceros agrestis HOM05D001886 ORTHO05D005666 1.2e-40 171.8 139 57.6
MD12G1139200 Malus domestica HOM05D001886 ORTHO05D005666 3.5e-37 160.2 241 44.4
Psat3g053880 Pisum sativum HOM05D000335 ORTHO05D005666 6.9e-33 146.0 120 67.5
BcaC05g29677 Brassica carinata HOM05D001886 ORTHO05D005666 2.1e-29 134.4 112 63.4
MD12G1139100 Malus domestica HOM05D001886 ORTHO05D005666 1.5e-27 128.3 131 53.4
Os12g0567000 Oryza sativa ssp. japonica HOM05D001886 ORTHO05D005666 9.3e-22 109.0 113 52.2
FAN11G3241 Fragaria x ananassa HOM05D001164 ORTHO05D001031 3.9e-20 103.6 79 72.2
FAN02G0854 Fragaria x ananassa HOM05D001886 ORTHO05D005666 8.7e-20 102.4 125 49.6
AagrBONN_evm.TU.Sc2ySwM_362.1965 Anthoceros agrestis HOM05D001886 ORTHO05D005666 3.1e-17 94.0 129 45.0
TAR636G1555 Trochodendron aralioides HOM05D001886 ORTHO05D005666 6.1e-13 79.7 324 26.5
Mapoly0174s0006 Marchantia polymorpha HOM05D001886 ORTHO05D005666 2.5e-11 74.3 442 25.8
SMO197G0098 Selaginella moellendorffii HOM05D001886 ORTHO05D005666 1.4e-09 68.6 439 25.5
Pp3c23_3660 Physcomitrium patens HOM05D004143 ORTHO05D004816 4.1e-09 67.0 231 26.8
Lsat_1_v5_gn_7_25540 Lactuca sativa HOM05D001886 ORTHO05D005666 1.3e-07 62.0 51 64.7
AUR62005954 Chenopodium quinoa HOM05D004143 ORTHO05D004816 2.2e-07 61.2 219 26.5
PSO782G2863 Papaver somniferum HOM05D004143 ORTHO05D004816 3.8e-07 60.5 203 27.6
Hund09750 Selenicereus undatus HOM05D004143 ORTHO05D004816 3.8e-07 60.5 218 26.6
AUR62028110 Chenopodium quinoa HOM05D004143 ORTHO05D004816 1.9e-06 58.2 219 26.5
Mapoly0086s0058 Marchantia polymorpha HOM05D004143 ORTHO05D004816 3.2e-06 57.4 449 22.3
FAN05G0933 Fragaria x ananassa HOM05D001164 ORTHO05D001031 4.2e-06 57.0 38 73.7
PSO063G4813 Papaver somniferum HOM05D004143 ORTHO05D004816 7.2e-06 56.2 196 27.0
Lsat_1_v5_gn_2_4320 Lactuca sativa HOM05D001886 ORTHO05D005666 9.4e-06 55.8 50 54.0


User provided reference genes

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