Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow3G2744 Salvia bowleyana HOM05D007552 ORTHO05D009397 1.8e-198 696.4 559 100.0
SalBow3G0468 Salvia bowleyana HOM05D007552 ORTHO05D009397 3.7e-196 688.7 557 98.0
MSTRG.22501 Avicennia marina HOM05D007552 ORTHO05D009397 1.0e-89 335.1 559 65.3
Haze_13567 Corylus avellana HOM05D007552 ORTHO05D009397 4.8e-71 273.1 412 69.2
Migut.I01195 Erythranthe guttata HOM05D007552 ORTHO05D009397 5.8e-69 266.2 559 61.9
Oeu058208.1 Olea europaea HOM05D007552 ORTHO05D009397 5.8e-69 266.2 560 55.7
Thecc.10G186400 Theobroma cacao HOM05D007552 ORTHO05D009397 2.2e-68 264.2 546 50.4
Duzib128G1161 Durio zibethinus HOM05D007552 ORTHO05D009397 5.5e-67 259.6 490 52.4
Duzib114G0042 Durio zibethinus HOM05D007552 ORTHO05D009397 9.3e-67 258.8 412 59.5
Manes.13G083600 Manihot esculenta HOM05D007552 ORTHO05D009397 8.2e-63 245.7 412 66.3
QL07p010391 Quercus lobata HOM05D007552 ORTHO05D009397 1.8e-57 228.0 370 70.5
Cc02_g21230 Coffea canephora HOM05D007552 ORTHO05D009397 3.9e-57 226.9 343 74.9
THA.LOC104812327 Tarenaya hassleriana HOM05D007552 ORTHO05D009397 6.3e-55 219.5 412 64.1
Sopen01g032250 Solanum pennellii HOM05D007552 ORTHO05D009397 1.1e-54 218.8 349 56.7
Hma1.2p1_0517F.1_g170780 Hydrangea macrophylla HOM05D007552 ORTHO05D009397 1.8e-54 218.0 349 61.9
Sed0018321 Sechium edule HOM05D007552 ORTHO05D009397 1.2e-53 215.3 383 67.4
Solyc01g080450.4 Solanum lycopersicum HOM05D007552 ORTHO05D009397 1.7e-52 211.5 347 56.8
Actinidia38807 Actinidia chinensis HOM05D007552 ORTHO05D009397 1.1e-51 208.8 349 68.5
QL08p045079 Quercus lobata HOM05D007552 ORTHO05D009397 9.4e-51 205.7 347 72.6
CANSAT54G1473 Cannabis sativa HOM05D007552 ORTHO05D009397 3.6e-50 203.8 369 68.6
Actinidia35910 Actinidia chinensis HOM05D007552 ORTHO05D009397 4.7e-50 203.4 345 68.7
Lj5P680T20 Lonicera japonica HOM05D007552 ORTHO05D009397 3.0e-49 200.7 355 63.1
Nitab4.5_0007324g0040 Nicotiana tabacum HOM05D007552 ORTHO05D009397 3.0e-49 200.7 524 49.6
QL93p2016_0066 Quercus lobata HOM05D007552 ORTHO05D009397 3.9e-49 200.3 349 71.3
CSS0020938 Camellia sinensis var. sinensis HOM05D007552 ORTHO05D009397 6.7e-49 199.5 344 62.5
COL.COLO4_19487 Corchorus olitorius HOM05D007552 ORTHO05D009397 1.5e-48 198.4 347 62.2
Sed0019272 Sechium edule HOM05D007552 ORTHO05D009397 1.5e-48 198.4 379 66.8
Nitab4.5_0000059g0200 Nicotiana tabacum HOM05D007552 ORTHO05D009397 2.0e-48 198.0 349 62.5
MELO3C002831.2 Cucumis melo HOM05D007552 ORTHO05D009397 4.4e-48 196.8 388 65.5
Dinv11901 Davidia involucrata HOM05D007552 ORTHO05D009397 2.2e-47 194.5 345 62.0
QL08p045116 Quercus lobata HOM05D007552 ORTHO05D009397 2.2e-47 194.5 345 71.0
PGSC0003DMG400032099 Solanum tuberosum HOM05D007552 ORTHO05D009397 3.7e-47 193.7 349 61.6
Gorai.012G013300 Gossypium raimondii HOM05D007552 ORTHO05D009397 1.8e-46 191.4 347 61.7
Gohir.D04G011100 Gossypium hirsutum HOM05D007552 ORTHO05D009397 4.1e-46 190.3 347 61.1
Nitab4.5_0007324g0010 Nicotiana tabacum HOM05D007552 ORTHO05D009397 9.1e-46 189.1 349 60.5
Peaxi162Scf00095g00416 Petunia axillaris HOM05D007552 ORTHO05D009397 9.1e-46 189.1 344 62.2
CAN.G889.11 Capsicum annuum HOM05D007552 ORTHO05D009397 1.5e-45 188.3 349 60.5
GSVIVG01029542001 Vitis vinifera HOM05D007552 ORTHO05D009397 2.0e-45 188.0 346 63.3
Sc01g0005200 Simmondsia chinensis HOM05D007552 ORTHO05D009397 3.5e-45 187.2 349 67.6
MD09G1165000 Malus domestica HOM05D007552 ORTHO05D009397 4.5e-45 186.8 349 68.5
Gohir.A05G404600 Gossypium hirsutum HOM05D007552 ORTHO05D009397 5.9e-45 186.4 347 47.6
Prupe.3G022400 Prunus persica HOM05D007552 ORTHO05D009397 2.2e-44 184.5 344 69.2
TAR626G0934 Trochodendron aralioides HOM05D007552 ORTHO05D009397 2.2e-44 184.5 349 59.3
Rhsim08G0249900 Rhododendron simsii HOM05D007552 ORTHO05D009397 2.9e-44 184.1 349 65.3
TWI75G0828 Tripterygium wilfordii HOM05D007552 ORTHO05D009397 2.9e-44 184.1 412 60.4
Ciclev10033432m.g Citrus clementina HOM05D007552 ORTHO05D009397 4.2e-43 180.3 470 52.1
Ciclev10033582m.g Citrus clementina HOM05D007552 ORTHO05D009397 2.0e-40 171.4 470 51.9
CAN.G497.96 Capsicum annuum HOM05D007552 ORTHO05D009397 7.4e-40 169.5 514 30.0
CsaV3_1G037150 Cucumis sativus L. HOM05D007552 ORTHO05D009397 2.8e-39 167.5 361 66.5
Lalb_Chr03g0029771 Lupinus albus HOM05D007552 ORTHO05D009397 6.3e-39 166.4 350 67.7
Eucgr.F04004 Eucalyptus grandis HOM05D007552 ORTHO05D009397 4.1e-38 163.7 345 59.4
MD17G1163100 Malus domestica HOM05D007552 ORTHO05D009397 4.1e-38 163.7 133 57.1
Aa31LG7G1270 Aethionema arabicum HOM05D007552 ORTHO05D009397 7.7e-37 159.5 412 54.4
MBI04_g20974_MAGBIO Magnolia biondii HOM05D007552 ORTHO05D009397 7.2e-35 152.9 345 66.7
vmacro06800 Vaccinium macrocarpon HOM05D007552 ORTHO05D009397 7.2e-35 152.9 346 65.6
CSS0021108 Camellia sinensis var. sinensis HOM05D007552 ORTHO05D009397 9.4e-35 152.5 258 38.4
PGR102G1581 Punica granatum HOM05D007552 ORTHO05D009397 1.6e-34 151.8 346 64.5
CARHR017300 Cardamine hirsuta HOM05D007552 ORTHO05D009397 6.1e-34 149.8 412 54.9
Phvul.005G185300 Phaseolus vulgaris HOM05D007552 ORTHO05D009397 1.0e-33 149.1 369 58.0
AL1G29000 Arabidopsis lyrata HOM05D007552 ORTHO05D009397 2.3e-33 147.9 412 41.3
Glyma.17G219900 Glycine max HOM05D007552 ORTHO05D009397 5.2e-33 146.7 383 54.6
Psat3g178720 Pisum sativum HOM05D007552 ORTHO05D009397 2.0e-32 144.8 522 47.1
ATR0776G035 Amborella trichopoda HOM05D007552 ORTHO05D009397 1.1e-30 139.0 127 49.6
Ca_26412_v3 Cicer arietinum L. HOM05D007552 ORTHO05D009397 1.4e-30 138.7 454 49.8
TAR626G0440 Trochodendron aralioides HOM05D007552 ORTHO05D009397 9.1e-30 136.0 143 46.9
Carub.0001s1657 Capsella rubella HOM05D007552 ORTHO05D009397 5.9e-29 133.3 362 43.9
Ca_25555_v3 Cicer arietinum L. HOM05D007552 ORTHO05D009397 7.7e-29 132.9 467 47.8
Cpa.g.sc155.17 Carica papaya HOM05D007552 ORTHO05D009397 2.2e-28 131.3 115 53.9
VMungo1080G1651 Vigna mungo HOM05D007552 ORTHO05D009397 2.2e-28 131.3 359 48.2
HPP92_024564 Vanilla planifolia HOM05D007552 ORTHO05D009397 3.8e-28 130.6 137 43.8
Thhalv10007086m.g Eutrema salsugineum HOM05D007552 ORTHO05D009397 5.0e-28 130.2 414 31.4
Hund18597 Selenicereus undatus HOM05D007552 ORTHO05D009397 6.5e-28 129.8 126 47.6
Nn1g09670 Nelumbo nucifera HOM05D007552 ORTHO05D009397 3.2e-27 127.5 140 45.7
Glyma.19G019400 Glycine max HOM05D007552 ORTHO05D009397 5.5e-27 126.7 369 49.9
Lj5g0015623 Lotus japonicus HOM05D007552 ORTHO05D009397 2.1e-26 124.8 347 48.4
Medtr7g025610 Medicago truncatula HOM05D007552 ORTHO05D009397 2.1e-26 124.8 240 32.9
BcaC05g25539 Brassica carinata HOM05D007552 ORTHO05D009397 1.5e-24 118.6 414 28.7
BolC5t30220H Brassica oleracea HOM05D007552 ORTHO05D009397 1.5e-24 118.6 414 28.7
AT1G16830 Arabidopsis thaliana HOM05D007552 ORTHO05D009397 7.5e-24 116.3 362 47.5
C05p15050 Brassica napus HOM05D007552 ORTHO05D009397 9.8e-24 115.9 415 24.8
Os10g0578500 Oryza sativa ssp. japonica HOM05D007552 ORTHO05D009397 1.3e-23 115.5 347 48.7
BraA06t24434Z Brassica rapa HOM05D007552 ORTHO05D009397 1.7e-23 115.2 414 22.9
A06p12740 Brassica napus HOM05D007552 ORTHO05D009397 6.3e-23 113.2 414 22.7
TPR.G37558 Trifolium pratense HOM05D007552 ORTHO05D009397 2.4e-22 111.3 568 34.0
Zm00001eb025110 Zea mays HOM05D007552 ORTHO05D009397 7.0e-22 109.8 345 53.9
Sp1g14970 Schrenkiella parvula HOM05D007552 ORTHO05D009397 9.1e-22 109.4 413 42.1
BcaB02g06673 Brassica carinata HOM05D007552 ORTHO05D009397 4.5e-21 107.1 413 42.1
Actinidia21884 Actinidia chinensis HOM05D007552 ORTHO05D009397 7.2e-19 99.8 65 66.2
TPR.G20566 Trifolium pratense HOM05D007552 ORTHO05D009397 6.8e-17 93.2 140 37.9
Nitab4.5_0002731g0040 Nicotiana tabacum HOM05D007552 ORTHO05D009397 7.5e-16 89.7 290 28.3
MD17G1163200 Malus domestica HOM05D007552 ORTHO05D009397 1.6e-13 82.0 76 44.7
TAR362G0754 Trochodendron aralioides HOM05D007552 ORTHO05D009397 9.5e-11 72.8 60 50.0
arahy.Tifrunner.gnm1.ann1.AR053R Arachis hypogaea HOM05D000001 ORTHO05D000003 1.5e-08 65.5 105 28.6
arahy.Tifrunner.gnm1.ann1.GET2P3 Arachis hypogaea HOM05D000001 ORTHO05D000003 1.5e-08 65.5 105 27.6
Sabra17G0080600 Salix brachista HOM05D000001 ORTHO05D009545 2.0e-08 65.1 102 32.4
RcHm_v2.0_Chr2g0089161 Rosa chinensis HOM05D000001 ORTHO05D000003 4.4e-08 63.9 111 36.0
Cc07_g05680 Coffea canephora HOM05D000001 ORTHO05D009545 7.5e-08 63.2 94 33.0
VMungo1080G1417 Vigna mungo HOM05D000001 ORTHO05D009545 7.5e-08 63.2 95 34.7
MD17G1163000 Malus domestica HOM05D007552 ORTHO05D009397 9.8e-08 62.8 51 51.0
CiPaw.02G010800 Carya illinoinensis HOM05D000001 ORTHO05D009545 1.3e-07 62.4 108 31.5
Lsat_1_v5_gn_2_86820 Lactuca sativa HOM05D000001 ORTHO05D009545 1.7e-07 62.0 100 31.0
Lj6C66G1 Lonicera japonica HOM05D007552 ORTHO05D009397 1.7e-07 62.0 52 53.8
Eucgr.B03180 Eucalyptus grandis HOM05D000001 ORTHO05D000003 2.2e-07 61.6 98 34.7
Glyma.13G332400 Glycine max HOM05D000001 ORTHO05D009545 2.2e-07 61.6 97 33.0
Actinidia10043 Actinidia chinensis HOM05D000001 ORTHO05D000003 2.9e-07 61.2 124 29.0
Lj7C45G14 Lonicera japonica HOM05D000001 ORTHO05D009545 2.9e-07 61.2 108 31.5
Medtr8g089960 Medicago truncatula HOM05D000001 ORTHO05D000003 2.9e-07 61.2 122 26.2
COL.COLO4_05756 Corchorus olitorius HOM05D000001 ORTHO05D000003 3.7e-07 60.8 101 32.7
Psat0s1625g0080 Pisum sativum HOM05D000001 ORTHO05D009545 3.7e-07 60.8 100 31.0
arahy.Tifrunner.gnm1.ann1.D1PR60 Arachis hypogaea HOM05D000001 ORTHO05D009545 4.9e-07 60.5 100 33.0
Cpa.g.sc59.24 Carica papaya HOM05D000001 ORTHO05D010218 6.4e-07 60.1 108 32.4
A05p18370 Brassica napus HOM05D002753 ORTHO05D003097 8.3e-07 59.7 110 25.5
BraA05t20727Z Brassica rapa HOM05D002753 ORTHO05D003097 8.3e-07 59.7 110 25.5
FvH4_1g20280 Fragaria vesca HOM05D000001 ORTHO05D000003 8.3e-07 59.7 95 29.5
FAN19G1185 Fragaria x ananassa HOM05D002324 ORTHO05D002380 8.3e-07 59.7 95 29.5
FAN28G2428 Fragaria x ananassa HOM05D000001 ORTHO05D000003 8.3e-07 59.7 95 29.5
Phvul.002G261100 Phaseolus vulgaris HOM05D000001 ORTHO05D000003 8.3e-07 59.7 101 26.7
MSTRG.846 Avicennia marina HOM05D000001 ORTHO05D009584 1.1e-06 59.3 98 28.6
FAN26G1097 Fragaria x ananassa HOM05D000001 ORTHO05D004838 1.1e-06 59.3 95 29.5
MD12G1221500 Malus domestica HOM05D000001 ORTHO05D000003 1.1e-06 59.3 98 36.7
Sp7g34620 Schrenkiella parvula HOM05D000001 ORTHO05D009545 1.1e-06 59.3 93 29.0
Hma1.2p1_0321F.1_g124340 Hydrangea macrophylla HOM05D000001 ORTHO05D010070 1.4e-06 58.9 99 28.3
Thecc.09G122700 Theobroma cacao HOM05D000001 ORTHO05D000003 1.4e-06 58.9 101 32.7
HPP92_021762 Vanilla planifolia HOM05D000001 ORTHO05D009545 1.4e-06 58.9 96 28.1
A08p37330 Brassica napus HOM05D000001 ORTHO05D000003 1.9e-06 58.5 108 28.7
BraA08t35630Z Brassica rapa HOM05D000001 ORTHO05D000003 1.9e-06 58.5 108 28.7
CDE11G0777 Ceratophyllum demersum HOM05D000001 ORTHO05D000003 1.9e-06 58.5 128 29.7
Ca_03399_v3 Cicer arietinum L. HOM05D000001 ORTHO05D009790 1.9e-06 58.5 96 29.2
Ca_17759_v3 Cicer arietinum L. HOM05D000001 ORTHO05D000003 1.9e-06 58.5 101 25.7
ECA238G0365 Erigeron canadensis HOM05D000001 ORTHO05D009545 1.9e-06 58.5 94 30.9
Glyma.08G133500 Glycine max HOM05D000001 ORTHO05D000003 1.9e-06 58.5 116 25.9
HanXRQChr13g0403081 Helianthus annuus HOM05D000001 ORTHO05D009545 1.9e-06 58.5 99 29.3
Phvul.L001943 Phaseolus vulgaris HOM05D000001 ORTHO05D009545 1.9e-06 58.5 95 33.7
TPR.G6231 Trifolium pratense HOM05D000001 ORTHO05D000003 1.9e-06 58.5 95 25.3
Migut.A00737 Erythranthe guttata HOM05D000001 ORTHO05D000003 2.4e-06 58.2 128 30.5
Lalb_Chr12g0203961 Lupinus albus HOM05D000001 ORTHO05D000003 2.4e-06 58.2 116 24.1
Psat1g022040 Pisum sativum HOM05D000001 ORTHO05D000003 2.4e-06 58.2 99 32.3
RcHm_v2.0_Chr2g0112421 Rosa chinensis HOM05D000001 ORTHO05D000003 2.4e-06 58.2 96 28.1
TPR.G33453 Trifolium pratense HOM05D000001 ORTHO05D009236 2.4e-06 58.2 104 29.8
CARHR043560 Cardamine hirsuta HOM05D002453 ORTHO05D008746 3.2e-06 57.8 110 24.5
Eucgr.H01992 Eucalyptus grandis HOM05D000001 ORTHO05D009545 3.2e-06 57.8 98 30.6
Thhalv10019618m.g Eutrema salsugineum HOM05D000001 ORTHO05D000003 3.2e-06 57.8 109 29.4
Lsat_1_v5_gn_6_32900 Lactuca sativa HOM05D000001 ORTHO05D009784 3.2e-06 57.8 94 33.0
Lj4g0010528 Lotus japonicus HOM05D000001 ORTHO05D000003 3.2e-06 57.8 101 26.7
Prupe.6G192600 Prunus persica HOM05D000001 ORTHO05D000003 3.2e-06 57.8 109 27.5
VMungo0251G3679 Vigna mungo HOM05D000001 ORTHO05D000003 3.2e-06 57.8 101 25.7
AUR62040432 Chenopodium quinoa HOM05D000001 ORTHO05D009069 4.1e-06 57.4 107 29.9
MD17G1054700 Malus domestica HOM05D000001 ORTHO05D009236 4.1e-06 57.4 104 28.8
Prupe.3G261400 Prunus persica HOM05D000001 ORTHO05D009236 4.1e-06 57.4 104 28.8
THA.LOC104826538 Tarenaya hassleriana HOM05D000001 ORTHO05D000003 4.1e-06 57.4 128 29.7
CAN.G206.105 Capsicum annuum HOM05D000001 ORTHO05D010262 5.4e-06 57.0 96 29.2
Gohir.A08G204300 Gossypium hirsutum HOM05D000001 ORTHO05D000003 5.4e-06 57.0 98 23.5
MBI05_g22325_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D000003 5.4e-06 57.0 96 27.1
MBI06_g27490_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D010923 5.4e-06 57.0 101 27.7
Psat7g056880 Pisum sativum HOM05D000001 ORTHO05D000003 5.4e-06 57.0 109 27.5
Sopen09g033730 Solanum pennellii HOM05D000001 ORTHO05D010218 5.4e-06 57.0 96 27.1
TPR.G18575 Trifolium pratense HOM05D000001 ORTHO05D010218 5.4e-06 57.0 105 26.7
AagrBONN_evm.TU.Sc2ySwM_344.4827 Anthoceros agrestis HOM05D006556 ORTHO05D008146 7.0e-06 56.6 106 29.2
MSTRG.3025 Avicennia marina HOM05D000001 ORTHO05D009236 7.0e-06 56.6 95 28.4
EL10Ac1g01810 Beta vulgaris HOM05D007938 ORTHO05D009069 7.0e-06 56.6 105 29.5
C08p00670 Brassica napus HOM05D000001 ORTHO05D000003 7.0e-06 56.6 99 27.3
BolC8t46865H Brassica oleracea HOM05D000001 ORTHO05D000003 7.0e-06 56.6 109 26.6
AUR62024044 Chenopodium quinoa HOM05D000001 ORTHO05D009069 7.0e-06 56.6 105 28.6
Thhalv10000094m.g Eutrema salsugineum HOM05D000001 ORTHO05D000003 7.0e-06 56.6 99 28.3
Gorai.001G040600 Gossypium raimondii HOM05D000001 ORTHO05D000003 7.0e-06 56.6 101 33.7
Nitab4.5_0020250g0010 Nicotiana tabacum HOM05D000001 ORTHO05D013582 7.0e-06 56.6 103 25.2
Psat0s3812g0040 Pisum sativum HOM05D000446 ORTHO05D000003 7.0e-06 56.6 115 27.8
RcHm_v2.0_Chr2g0164221 Rosa chinensis HOM05D000001 ORTHO05D000003 7.0e-06 56.6 89 32.6
Sp1g02470 Schrenkiella parvula HOM05D000001 ORTHO05D000003 7.0e-06 56.6 99 28.3
PGSC0003DMG400001505 Solanum tuberosum HOM05D000001 ORTHO05D010218 7.0e-06 56.6 96 27.1
BcaNung03847 Brassica carinata HOM05D000001 ORTHO05D000003 9.2e-06 56.2 98 28.6
CsaV3_7G006520 Cucumis sativus L. HOM05D000001 ORTHO05D000003 9.2e-06 56.2 93 25.8
Gorai.004G235300 Gossypium raimondii HOM05D000001 ORTHO05D000003 9.2e-06 56.2 98 25.5
Gorai.013G086000 Gossypium raimondii HOM05D000001 ORTHO05D000003 9.2e-06 56.2 111 32.4
Nn3g20303 Nelumbo nucifera HOM05D000001 ORTHO05D009790 9.2e-06 56.2 94 28.7
SalBow6G1733 Salvia bowleyana HOM05D000001 ORTHO05D010176 9.2e-06 56.2 99 34.3
Solyc02g087610.1 Solanum lycopersicum HOM05D000001 ORTHO05D010262 9.2e-06 56.2 96 30.2
Solyc09g090780.1 Solanum lycopersicum HOM05D000001 ORTHO05D010218 9.2e-06 56.2 96 26.0
TWI15G0229 Tripterygium wilfordii HOM05D000001 ORTHO05D000003 9.2e-06 56.2 92 31.5


User provided reference genes

Program Settings