Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow3G2736 Salvia bowleyana HOM05D007041 ORTHO05D008036 2.5e-74 282.0 134 100.0
Nitab4.5_0000305g0050 Nicotiana tabacum HOM05D007041 ORTHO05D008036 2.4e-13 79.3 105 42.9
Oeu007855.1 Olea europaea HOM05D007041 ORTHO05D008036 7.1e-13 77.8 97 42.3
vmacro22517 Vaccinium macrocarpon HOM05D007041 ORTHO05D008036 9.2e-13 77.4 133 36.1
Nitab4.5_0007594g0010 Nicotiana tabacum HOM05D007041 ORTHO05D008036 1.2e-12 77.0 122 34.4
Manes.05G025400 Manihot esculenta HOM05D007041 ORTHO05D008036 1.6e-12 76.6 94 41.5
Oeu007854.1 Olea europaea HOM05D007041 ORTHO05D008036 6.0e-12 74.7 106 40.6
Thecc.01G346300 Theobroma cacao HOM05D007041 ORTHO05D008036 6.0e-12 74.7 115 37.4
CiPaw.02G039100 Carya illinoinensis HOM05D007041 ORTHO05D008036 5.1e-11 71.6 106 41.5
Migut.B01841 Erythranthe guttata HOM05D007041 ORTHO05D008036 1.9e-10 69.7 53 56.6
Rhsim01G0170500 Rhododendron simsii HOM05D007041 ORTHO05D008036 2.5e-10 69.3 125 32.0
FAN03G1744 Fragaria x ananassa HOM05D007041 ORTHO05D008036 5.6e-10 68.2 58 58.6
MD07G1146000 Malus domestica HOM05D007041 ORTHO05D008036 5.6e-10 68.2 101 41.6
Peaxi162Scf00843g00001 Petunia axillaris HOM05D007041 ORTHO05D008036 7.3e-10 67.8 105 39.0
FvH4_7g16050 Fragaria vesca HOM05D007041 ORTHO05D008036 1.6e-09 66.6 58 56.9
FAN10G1361 Fragaria x ananassa HOM05D007041 ORTHO05D008036 1.6e-09 66.6 58 56.9
FAN10G2988 Fragaria x ananassa HOM05D007041 ORTHO05D008036 1.6e-09 66.6 58 56.9
CSS0039531 Camellia sinensis var. sinensis HOM05D007041 ORTHO05D008036 2.1e-09 66.2 68 47.1
Actinidia28494 Actinidia chinensis HOM05D000017 ORTHO05D008036 2.8e-09 65.9 48 58.3
CSS0019600 Camellia sinensis var. sinensis HOM05D007041 ORTHO05D008036 2.8e-09 65.9 99 39.4
CSS0049473 Camellia sinensis var. sinensis HOM05D007041 ORTHO05D008036 3.6e-09 65.5 101 39.6
Gohir.A07G139300 Gossypium hirsutum HOM05D007041 ORTHO05D008036 4.7e-09 65.1 97 38.1
Nn2g15118 Nelumbo nucifera HOM05D007041 ORTHO05D008036 4.7e-09 65.1 96 35.4
Rhsim01G0170200 Rhododendron simsii HOM05D007041 ORTHO05D008036 4.7e-09 65.1 44 56.8
TAR629G2489 Trochodendron aralioides HOM05D007041 ORTHO05D008036 4.7e-09 65.1 135 32.6
vmacro22515 Vaccinium macrocarpon HOM05D007041 ORTHO05D008036 4.7e-09 65.1 99 36.4
FAN06G3979 Fragaria x ananassa HOM05D007041 ORTHO05D008036 6.2e-09 64.7 59 54.2
Gohir.D08G147100 Gossypium hirsutum HOM05D007041 ORTHO05D008036 6.2e-09 64.7 88 42.0
Gorai.004G152600 Gossypium raimondii HOM05D007041 ORTHO05D008036 6.2e-09 64.7 88 42.0
Gohir.D07G144400 Gossypium hirsutum HOM05D007041 ORTHO05D008036 8.1e-09 64.3 97 36.1
Gorai.001G156400 Gossypium raimondii HOM05D007041 ORTHO05D008036 8.1e-09 64.3 97 36.1
Lalb_Chr17g0342361 Lupinus albus HOM05D007041 ORTHO05D008036 8.1e-09 64.3 88 37.5
Rhsim07G0006100 Rhododendron simsii HOM05D000337 ORTHO05D000297 8.1e-09 64.3 73 43.8
FAN06G2039 Fragaria x ananassa HOM05D007041 ORTHO05D008036 1.1e-08 63.9 58 55.2
Lj3g0003817 Lotus japonicus HOM05D007041 ORTHO05D008036 1.1e-08 63.9 103 34.0
Prupe.2G184300 Prunus persica HOM05D007041 ORTHO05D008036 1.4e-08 63.5 48 56.2
Atru.chr5.628 Acer truncatum HOM05D007041 ORTHO05D008036 1.8e-08 63.2 98 35.7
EL10Ac1g00306 Beta vulgaris HOM05D007041 ORTHO05D008036 1.8e-08 63.2 40 60.0
SalBow8G1472 Salvia bowleyana HOM05D009660 ORTHO05D008036 1.8e-08 63.2 41 65.9
vmacro22516 Vaccinium macrocarpon HOM05D007041 ORTHO05D008036 2.4e-08 62.8 103 34.0
COL.COLO4_06320 Corchorus olitorius HOM05D007041 ORTHO05D008036 3.1e-08 62.4 115 35.7
Medtr8g027905 Medicago truncatula HOM05D001941 ORTHO05D008036 3.1e-08 62.4 104 39.4
TAR636G2915 Trochodendron aralioides HOM05D007041 ORTHO05D008036 3.1e-08 62.4 119 34.5
CiPaw.01G073300 Carya illinoinensis HOM05D007041 ORTHO05D008036 4.0e-08 62.0 88 40.9
TPR.G7661 Trifolium pratense HOM05D007041 ORTHO05D008036 4.0e-08 62.0 94 37.2
C08p36510 Brassica napus HOM05D007041 ORTHO05D008036 5.2e-08 61.6 93 37.6
BolC8t51234H Brassica oleracea HOM05D007041 ORTHO05D008036 5.2e-08 61.6 93 37.6
QL02p031389 Quercus lobata HOM05D007041 ORTHO05D008036 5.2e-08 61.6 95 33.7
RcHm_v2.0_Chr1g0358991 Rosa chinensis HOM05D007041 ORTHO05D008036 5.2e-08 61.6 47 57.4
Glyma.07G057800 Glycine max HOM05D007041 ORTHO05D008036 6.8e-08 61.2 130 29.2
Carub.0005s2835 Capsella rubella HOM05D007041 ORTHO05D008036 8.9e-08 60.8 100 36.0
SalBow1G6262 Salvia bowleyana HOM05D002583 ORTHO05D002776 8.9e-08 60.8 30 80.0
SGA_v2.0_scaffold11G05722 Striga asiatica HOM05D007041 ORTHO05D008036 8.9e-08 60.8 38 71.1
Potri.014G095600 Populus trichocarpa HOM05D007041 ORTHO05D008036 1.2e-07 60.5 45 55.6
Sabra14G0070100 Salix brachista HOM05D007041 ORTHO05D008036 1.2e-07 60.5 83 42.2
AL5G44060 Arabidopsis lyrata HOM05D007041 ORTHO05D008036 1.5e-07 60.1 110 36.4
A09p53730 Brassica napus HOM05D007041 ORTHO05D008036 1.5e-07 60.1 98 34.7
BraA09t40795Z Brassica rapa HOM05D007041 ORTHO05D008036 1.5e-07 60.1 98 34.7
Medtr8g027915 Medicago truncatula HOM05D007041 ORTHO05D008036 1.5e-07 60.1 91 36.3
AT3G61660 Arabidopsis thaliana HOM05D007041 ORTHO05D008036 2.0e-07 59.7 105 35.2
arahy.Tifrunner.gnm1.ann1.JU2T19 Arachis hypogaea HOM05D007041 ORTHO05D008036 2.0e-07 59.7 35 57.1
arahy.Tifrunner.gnm1.ann1.LKBY4F Arachis hypogaea HOM05D007041 ORTHO05D008036 2.0e-07 59.7 35 57.1
CANSAT56G1227 Cannabis sativa HOM05D007041 ORTHO05D008036 2.0e-07 59.7 126 32.5
CiPaw.12G084900 Carya illinoinensis HOM05D007041 ORTHO05D008036 2.0e-07 59.7 43 53.5
Glyma.16G026800 Glycine max HOM05D007041 ORTHO05D008036 2.6e-07 59.3 39 56.4
CARHR171970 Cardamine hirsuta HOM05D007041 ORTHO05D008036 3.4e-07 58.9 118 31.4
Cpa.g.sc2382.1 Carica papaya HOM05D007041 ORTHO05D008036 3.4e-07 58.9 34 67.6
Thhalv10006386m.g Eutrema salsugineum HOM05D007041 ORTHO05D008036 4.4e-07 58.5 101 32.7
Sp5g01745 Schrenkiella parvula HOM05D007041 ORTHO05D008036 4.4e-07 58.5 34 64.7
Zm00001eb310140 Zea mays HOM05D007041 ORTHO05D008036 4.4e-07 58.5 52 48.1
Zm00001eb441140 Zea mays HOM05D007041 ORTHO05D008036 4.4e-07 58.5 52 48.1
Lsat_1_v5_gn_7_2180 Lactuca sativa HOM05D007041 ORTHO05D008036 5.8e-07 58.2 41 56.1
Oeu009948.1 Olea europaea HOM05D007041 ORTHO05D008036 9.9e-07 57.4 40 55.0
Sopen08g030330 Solanum pennellii HOM05D002045 ORTHO05D002014 1.3e-06 57.0 29 75.9
PGSC0003DMG400012302 Solanum tuberosum HOM05D007041 ORTHO05D008036 1.3e-06 57.0 29 75.9
Nn1g01816 Nelumbo nucifera HOM05D007041 ORTHO05D008036 1.7e-06 56.6 98 32.7
Glyma.19G254100 Glycine max HOM05D007041 ORTHO05D008036 2.9e-06 55.8 93 35.5
Gohir.A12G234950 Gossypium hirsutum HOM05D007041 ORTHO05D008036 3.8e-06 55.5 105 34.3
Prupe.5G115500 Prunus persica HOM05D007041 ORTHO05D008036 3.8e-06 55.5 84 34.5
Thecc.03G293400 Theobroma cacao HOM05D007041 ORTHO05D008036 3.8e-06 55.5 45 48.9
CsaV3_3G008250 Cucumis sativus L. HOM05D007041 ORTHO05D008036 4.9e-06 55.1 39 53.8
VMungo0331G1585 Vigna mungo HOM05D007041 ORTHO05D008036 4.9e-06 55.1 38 55.3
AUR62023489 Chenopodium quinoa HOM05D007041 ORTHO05D008036 6.4e-06 54.7 38 60.5
ECA236G3839 Erigeron canadensis HOM05D007041 ORTHO05D008036 6.4e-06 54.7 44 54.5
Phvul.010G111500 Phaseolus vulgaris HOM05D007041 ORTHO05D008036 6.4e-06 54.7 38 52.6
Potri.002G168300 Populus trichocarpa HOM05D007041 ORTHO05D008036 6.4e-06 54.7 46 50.0
Potri.003G137600 Populus trichocarpa HOM05D007041 ORTHO05D008036 6.4e-06 54.7 88 37.5
Medtr7g117120 Medicago truncatula HOM05D007041 ORTHO05D008036 8.4e-06 54.3 76 36.8
Medtr8g027305 Medicago truncatula HOM05D007041 ORTHO05D008036 8.4e-06 54.3 45 48.9


User provided reference genes

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