Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow3G2669 Salvia bowleyana HOM05D005647 ORTHO05D006968 0.0e+00 1524.2 768 100.0
SalBow3G1239 Salvia bowleyana HOM05D005647 ORTHO05D006968 0.0e+00 1516.1 768 99.5
MSTRG.21166 Avicennia marina HOM05D005647 ORTHO05D006968 4.0e-185 652.5 711 53.7
SGA_v2.0_scaffold61G21232 Striga asiatica HOM05D005647 ORTHO05D006968 2.8e-154 550.1 697 47.8
Migut.D02155 Erythranthe guttata HOM05D005647 ORTHO05D006968 1.2e-144 518.1 704 46.9
Oeu058515.3 Olea europaea HOM05D005647 ORTHO05D006968 1.9e-139 500.7 807 42.1
Cc01_g12040 Coffea canephora HOM05D005647 ORTHO05D006968 2.9e-127 460.3 574 46.9
Lj1A178T39 Lonicera japonica HOM05D005647 ORTHO05D006968 9.0e-121 438.7 397 57.9
Nitab4.5_0000022g0330 Nicotiana tabacum HOM05D005647 ORTHO05D006968 4.5e-120 436.4 397 59.2
Sopen06g001190 Solanum pennellii HOM05D005647 ORTHO05D006968 8.5e-119 432.2 459 54.2
Solyc06g005200.3 Solanum lycopersicum HOM05D005647 ORTHO05D006968 1.1e-118 431.8 388 60.6
Nitab4.5_0008854g0020 Nicotiana tabacum HOM05D005647 ORTHO05D006968 7.2e-118 429.1 397 58.2
PGSC0003DMG400033668 Solanum tuberosum HOM05D005647 ORTHO05D006968 5.1e-116 422.9 547 47.7
Actinidia00810 Actinidia chinensis HOM05D005647 ORTHO05D006968 1.7e-114 417.9 383 56.4
Rhsim01G0223800 Rhododendron simsii HOM05D005647 ORTHO05D006968 4.8e-114 416.4 576 44.6
unitig_736.g22430 Utricularia gibba HOM05D005647 ORTHO05D006968 1.2e-112 411.8 625 41.6
CiPaw.13G102300 Carya illinoinensis HOM05D005647 ORTHO05D006968 4.2e-110 403.3 484 47.7
Lsat_1_v5_gn_5_167021 Lactuca sativa HOM05D005647 ORTHO05D006968 4.2e-110 403.3 408 54.9
Cfa011418 Carpinus fangiana HOM05D005647 ORTHO05D006968 1.0e-108 398.7 475 48.0
QL03p069904 Quercus lobata HOM05D005647 ORTHO05D006968 2.3e-108 397.5 385 55.3
Duzib150G0770 Durio zibethinus HOM05D005647 ORTHO05D006968 6.7e-108 396.0 382 55.5
TAR623G0344 Trochodendron aralioides HOM05D005647 ORTHO05D006968 6.7e-108 396.0 557 44.2
COL.COLO4_18417 Corchorus olitorius HOM05D005647 ORTHO05D006968 8.8e-108 395.6 381 55.1
Hund18946 Selenicereus undatus HOM05D005647 ORTHO05D006968 1.1e-107 395.2 373 56.0
Gohir.A05G099200 Gossypium hirsutum HOM05D005647 ORTHO05D006968 1.5e-107 394.8 384 53.9
GSVIVG01025064001 Vitis vinifera HOM05D005647 ORTHO05D006968 1.5e-107 394.8 393 55.2
TWI75G1819 Tripterygium wilfordii HOM05D005647 ORTHO05D006968 1.3e-106 391.7 395 51.6
Thecc.09G331200 Theobroma cacao HOM05D005647 ORTHO05D006968 1.7e-106 391.3 440 50.7
Gorai.009G103000 Gossypium raimondii HOM05D005647 ORTHO05D006968 2.8e-106 390.6 384 53.1
Gohir.D05G099100 Gossypium hirsutum HOM05D005647 ORTHO05D006968 1.8e-105 387.9 383 53.0
CANSAT54G2414 Cannabis sativa HOM05D005647 ORTHO05D006968 5.9e-104 382.9 375 55.5
ECA248G2619 Erigeron canadensis HOM05D005647 ORTHO05D006968 7.7e-104 382.5 401 52.6
Ciclev10027867m.g Citrus clementina HOM05D005647 ORTHO05D006968 1.0e-103 382.1 435 49.9
DCAR_005295 Daucus carota HOM05D005647 ORTHO05D006968 1.7e-103 381.3 443 50.6
HanXRQChr14g0429211 Helianthus annuus HOM05D005647 ORTHO05D006968 2.5e-102 377.5 434 50.9
CAN.G200.2 Capsicum annuum HOM05D005647 ORTHO05D006968 2.7e-101 374.0 396 53.0
Ah.15g096320 Amaranthus hybridus HOM05D005647 ORTHO05D006968 6.1e-101 372.9 375 53.1
Haze_23998 Corylus avellana HOM05D005647 ORTHO05D006968 1.4e-100 371.7 475 46.3
AL8G36550 Arabidopsis lyrata HOM05D005647 ORTHO05D006968 2.3e-100 370.9 443 48.3
vmacro14498 Vaccinium macrocarpon HOM05D005647 ORTHO05D006968 2.3e-100 370.9 403 52.1
Actinidia03769 Actinidia chinensis HOM05D005647 ORTHO05D006968 4.0e-100 370.2 365 54.5
AT5G59980 Arabidopsis thaliana HOM05D005647 ORTHO05D006968 4.0e-100 370.2 419 49.4
Carub.0004s0912 Capsella rubella HOM05D005647 ORTHO05D006968 2.6e-99 367.5 389 51.7
EL10Ac7g15937 Beta vulgaris HOM05D005647 ORTHO05D006968 3.3e-99 367.1 373 52.3
PSO447G0260 Papaver somniferum HOM05D005647 ORTHO05D006968 3.3e-99 367.1 417 48.2
PSO541G4932 Papaver somniferum HOM05D005647 ORTHO05D006968 4.4e-99 366.7 372 51.6
RcHm_v2.0_Chr4g0385531 Rosa chinensis HOM05D005647 ORTHO05D006968 3.7e-98 363.6 437 47.4
RcHm_v2.0_Chr5g0062191 Rosa chinensis HOM05D005647 ORTHO05D006968 4.8e-98 363.2 437 47.1
Glyma.13G196800 Glycine max HOM05D005647 ORTHO05D006968 2.4e-97 360.9 550 40.9
Peaxi162Scf00006g01310 Petunia axillaris HOM05D005647 ORTHO05D006968 2.4e-97 360.9 450 49.1
Thhalv10012856m.g Eutrema salsugineum HOM05D005647 ORTHO05D006968 4.5e-96 356.7 395 50.4
Manes.04G028600 Manihot esculenta HOM05D005647 ORTHO05D006968 5.9e-96 356.3 366 53.0
Lj3g0017565 Lotus japonicus HOM05D005647 ORTHO05D006968 2.2e-95 354.4 431 48.5
THA.LOC104809599 Tarenaya hassleriana HOM05D005647 ORTHO05D006968 5.0e-95 353.2 417 47.2
FAN11G0841 Fragaria x ananassa HOM05D005647 ORTHO05D006968 8.5e-95 352.4 432 47.2
MD11G1117900 Malus domestica HOM05D005647 ORTHO05D006968 8.5e-95 352.4 375 50.7
Sc14g0000850 Simmondsia chinensis HOM05D005647 ORTHO05D006968 1.1e-94 352.1 378 51.9
MELO3C025708.2 Cucumis melo HOM05D005647 ORTHO05D006968 1.5e-94 351.7 472 42.6
FAN25G1201 Fragaria x ananassa HOM05D005647 ORTHO05D006968 1.9e-94 351.3 432 47.0
Sed0021109 Sechium edule HOM05D005647 ORTHO05D006968 1.9e-94 351.3 385 49.1
Atru.chr3.3782 Acer truncatum HOM05D005647 ORTHO05D006968 2.5e-94 350.9 473 43.3
Aa31LG1G12110 Aethionema arabicum HOM05D005647 ORTHO05D006968 3.2e-94 350.5 447 45.6
PSO675G6613 Papaver somniferum HOM05D005647 ORTHO05D006968 5.5e-94 349.7 363 51.2
FvH4_3g34550 Fragaria vesca HOM05D005647 ORTHO05D006968 7.2e-94 349.4 432 47.0
Potri.009G025800 Populus trichocarpa HOM05D005647 ORTHO05D006968 1.2e-93 348.6 434 47.2
ClCG02G020580 Citrullus lanatus HOM05D005647 ORTHO05D006968 3.6e-93 347.1 431 45.5
A02p06680 Brassica napus HOM05D005647 ORTHO05D006968 4.7e-93 346.7 449 46.1
FAN21G3075 Fragaria x ananassa HOM05D005647 ORTHO05D006968 4.7e-93 346.7 432 46.8
BcaB05g22600 Brassica carinata HOM05D005647 ORTHO05D006968 6.1e-93 346.3 524 41.8
MBI14_g34527_MAGBIO Magnolia biondii HOM05D005647 ORTHO05D006968 6.1e-93 346.3 372 49.5
C02p11970 Brassica napus HOM05D005647 ORTHO05D006968 8.0e-93 345.9 449 46.1
BolC2t07297H Brassica oleracea HOM05D005647 ORTHO05D006968 8.0e-93 345.9 391 49.4
BraA02t05750Z Brassica rapa HOM05D005647 ORTHO05D006968 8.0e-93 345.9 449 46.1
PGR119G0370 Punica granatum HOM05D005647 ORTHO05D006968 8.0e-93 345.9 370 51.4
Cpa.g.sc139.4 Carica papaya HOM05D005647 ORTHO05D006968 1.8e-92 344.7 330 56.7
FAN16G2614 Fragaria x ananassa HOM05D005647 ORTHO05D006968 1.8e-92 344.7 432 46.5
TPR.G17867 Trifolium pratense HOM05D005647 ORTHO05D006968 5.2e-92 343.2 379 48.5
Ca_01361_v3 Cicer arietinum L. HOM05D005647 ORTHO05D006968 6.8e-92 342.8 412 46.6
AUR62001855 Chenopodium quinoa HOM05D005647 ORTHO05D006968 2.0e-91 341.3 372 50.5
Psat5g282040 Pisum sativum HOM05D005647 ORTHO05D006968 5.7e-91 339.7 374 48.7
Lalb_Chr24g0394311 Lupinus albus HOM05D005647 ORTHO05D006968 1.7e-90 338.2 374 47.9
TPR.G11621 Trifolium pratense HOM05D005647 ORTHO05D006968 1.7e-90 338.2 372 48.9
Phvul.L002619 Phaseolus vulgaris HOM05D005647 ORTHO05D006968 2.2e-90 337.8 374 48.9
Sp6g21650 Schrenkiella parvula HOM05D005647 ORTHO05D006968 2.2e-90 337.8 452 46.5
VMungo1080G1709 Vigna mungo HOM05D005647 ORTHO05D006968 4.8e-90 336.7 439 45.1
A10p17190 Brassica napus HOM05D005647 ORTHO05D006968 1.4e-89 335.1 489 41.9
BcaC04g19653 Brassica carinata HOM05D005647 ORTHO05D006968 2.4e-89 334.3 388 49.2
BolC9t58115H Brassica oleracea HOM05D005647 ORTHO05D006968 2.4e-89 334.3 388 49.2
BraA10t43800Z Brassica rapa HOM05D005647 ORTHO05D006968 2.4e-89 334.3 488 41.6
C09p52480 Brassica napus HOM05D005647 ORTHO05D006968 4.1e-89 333.6 388 49.2
BcaB08g36205 Brassica carinata HOM05D005647 ORTHO05D006968 1.2e-88 332.0 382 48.4
Medtr2g096090 Medicago truncatula HOM05D005647 ORTHO05D006968 1.0e-87 328.9 374 48.1
Aqoxy4G03106 Aquilegia oxysepala HOM05D005647 ORTHO05D006968 4.2e-86 323.6 387 46.0
Aa31LG5G21920 Aethionema arabicum HOM05D005647 ORTHO05D006968 7.2e-86 322.8 345 52.2
Eucgr.A02758 Eucalyptus grandis HOM05D005647 ORTHO05D006968 1.2e-85 322.0 438 43.8
Sabra09G0017200 Salix brachista HOM05D005647 ORTHO05D000187 1.3e-82 312.0 483 41.4
arahy.Tifrunner.gnm1.ann1.7X2355 Arachis hypogaea HOM05D005647 ORTHO05D006968 2.2e-82 311.2 389 45.2
THA.LOC104813123 Tarenaya hassleriana HOM05D005647 ORTHO05D006968 1.8e-81 308.1 367 48.8
ATR0787G117 Amborella trichopoda HOM05D005647 ORTHO05D006968 5.4e-81 306.6 339 48.4
Prupe.6G088000 Prunus persica HOM05D005647 ORTHO05D006968 9.1e-81 305.8 329 48.9
CDE08G0081 Ceratophyllum demersum HOM05D005647 ORTHO05D006968 1.2e-80 305.4 486 39.5
Aqoxy4G03104_Aqoxy4G03103 Aquilegia oxysepala HOM05D005647 ORTHO05D006968 2.0e-80 304.7 378 47.4
arahy.Tifrunner.gnm1.ann1.W04KXW Arachis hypogaea HOM05D005647 ORTHO05D006968 1.0e-79 302.4 389 44.5
CDE02G4018 Ceratophyllum demersum HOM05D005647 ORTHO05D006968 1.1e-78 298.9 334 47.9
arahy.Tifrunner.gnm1.ann1.S4SLQI Arachis hypogaea HOM05D005647 ORTHO05D006968 1.6e-72 278.5 621 32.4
arahy.Tifrunner.gnm1.ann1.ZDAZ4C Arachis hypogaea HOM05D005647 ORTHO05D006968 7.3e-70 269.6 620 32.1
Nn2g13828 Nelumbo nucifera HOM05D005647 ORTHO05D006968 4.7e-61 240.4 202 58.9
Gorai.013G129300 Gossypium raimondii HOM05D005647 ORTHO05D006968 2.2e-58 231.5 271 49.1
AUR62009649 Chenopodium quinoa HOM05D005647 ORTHO05D006968 2.7e-56 224.6 269 47.2
VMungo1127G1784 Vigna mungo HOM05D005647 ORTHO05D006968 1.5e-54 218.8 206 56.8
Pp3c23_18130 Physcomitrium patens HOM05D005647 ORTHO05D006968 2.5e-54 218.0 302 41.4
Zm00001eb163100 Zea mays HOM05D005647 ORTHO05D006968 3.2e-49 201.1 354 38.1
Mapoly0041s0094 Marchantia polymorpha HOM05D005647 ORTHO05D006968 3.5e-48 197.6 325 36.3
Os12g0175900 Oryza sativa ssp. japonica HOM05D005647 ORTHO05D006968 1.3e-47 195.7 330 39.1
SEGI_32841 Sequoiadendron giganteum HOM05D005647 ORTHO05D006968 1.7e-47 195.3 267 39.0
CsaV3_6G022020 Cucumis sativus L. HOM05D005647 ORTHO05D006968 1.0e-39 169.5 272 37.9
VMungo1127G0608 Vigna mungo HOM05D005647 ORTHO05D006968 2.7e-32 144.8 204 40.7
Dinv32824 Davidia involucrata HOM05D005647 ORTHO05D006968 6.0e-32 143.7 114 59.6
MBI03_g45445_MAGBIO Magnolia biondii HOM05D005647 ORTHO05D006968 8.7e-31 139.8 125 56.0
CARHR273620 Cardamine hirsuta HOM05D005647 ORTHO05D006968 1.9e-30 138.7 137 49.6
Lsat_1_v5_gn_5_100621 Lactuca sativa HOM05D005647 ORTHO05D006968 3.3e-30 137.9 155 51.0
Aqoxy4G01384 Aquilegia oxysepala HOM05D005647 ORTHO05D006968 2.0e-27 128.6 113 54.9
VMungo1127G1495 Vigna mungo HOM05D005647 ORTHO05D006968 4.3e-22 110.9 126 50.8
SEGI_06158 Sequoiadendron giganteum HOM05D005647 ORTHO05D006968 1.1e-20 106.3 106 48.1
EL10Ac9g22529 Beta vulgaris HOM05D005647 ORTHO05D006968 1.2e-19 102.8 88 58.0
Cre02.g088050 Chlamydomonas reinhardtii HOM05D005647 ORTHO05D006968 1.1e-17 96.3 315 25.4
SMO348G0064 Selaginella moellendorffii HOM05D005647 ORTHO05D006968 1.2e-16 92.8 160 35.0
MBI10_g46876_MAGBIO Magnolia biondii HOM05D005647 ORTHO05D006968 1.3e-15 89.4 82 50.0
Gohir.D11G155700 Gossypium hirsutum HOM05D001229 ORTHO05D011852 1.1e-12 79.7 55 67.3
Gorai.007G165900 Gossypium raimondii HOM05D001229 ORTHO05D011852 1.1e-12 79.7 55 67.3
QL03p025644 Quercus lobata HOM05D005647 ORTHO05D006968 1.2e-11 76.3 68 55.9
MCO02G042 Micromonas commoda HOM05D005647 ORTHO05D006968 3.8e-10 71.2 261 26.1
Migut.O00549 Erythranthe guttata HOM05D005647 ORTHO05D006968 2.5e-09 68.6 344 25.6
MBI14_g07932_MAGBIO Magnolia biondii HOM05D002922 ORTHO05D006968 6.7e-07 60.5 76 44.7


User provided reference genes

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