Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow3G2595 Salvia bowleyana HOM05D003837 ORTHO05D004751 2.1e-157 558.9 270 100.0
Nitab4.5_0000386g0040 Nicotiana tabacum HOM05D003837 ORTHO05D004751 1.1e-137 493.4 270 88.1
Solyc10g012410.3 Solanum lycopersicum HOM05D003837 ORTHO05D004751 2.1e-136 489.2 270 86.7
PGSC0003DMG400006508 Solanum tuberosum HOM05D003837 ORTHO05D004751 2.1e-136 489.2 270 86.3
MSTRG.17276 Avicennia marina HOM05D003837 ORTHO05D004751 2.7e-136 488.8 270 86.3
Sopen10g006240 Solanum pennellii HOM05D003837 ORTHO05D004751 3.5e-136 488.4 270 86.3
Nitab4.5_0002811g0010 Nicotiana tabacum HOM05D003837 ORTHO05D004751 1.3e-135 486.5 270 87.0
Migut.B01769 Erythranthe guttata HOM05D003837 ORTHO05D004751 3.9e-135 485.0 270 85.9
Gohir.A08G032500 Gossypium hirsutum HOM05D003837 ORTHO05D004751 8.6e-135 483.8 270 85.9
Gorai.004G042000 Gossypium raimondii HOM05D003837 ORTHO05D004751 1.9e-134 482.6 270 85.9
Gohir.D08G043400 Gossypium hirsutum HOM05D003837 ORTHO05D004751 3.3e-134 481.9 270 85.6
CAN.G116.14 Capsicum annuum HOM05D003837 ORTHO05D004751 4.3e-134 481.5 270 86.3
Thecc.01G357600 Theobroma cacao HOM05D003837 ORTHO05D004751 2.1e-133 479.2 270 84.4
Duzib138G0194 Durio zibethinus HOM05D003837 ORTHO05D004751 4.7e-133 478.0 270 84.4
arahy.Tifrunner.gnm1.ann1.LGM3J9 Arachis hypogaea HOM05D003837 ORTHO05D004751 2.3e-132 475.7 270 83.0
ECA236G1077 Erigeron canadensis HOM05D003837 ORTHO05D004751 4.0e-132 474.9 270 83.3
Migut.B01768 Erythranthe guttata HOM05D003837 ORTHO05D004751 5.2e-132 474.6 272 84.6
arahy.Tifrunner.gnm1.ann1.8FQY9T Arachis hypogaea HOM05D003837 ORTHO05D004751 6.8e-132 474.2 270 82.6
CiPaw.01G063000 Carya illinoinensis HOM05D003837 ORTHO05D004751 2.6e-131 472.2 270 83.3
Hma1.2p1_0780F.1_g216730 Hydrangea macrophylla HOM05D003837 ORTHO05D004751 2.6e-131 472.2 268 84.3
Oeu010619.1 Olea europaea HOM05D003837 ORTHO05D004751 3.4e-131 471.9 270 84.1
arahy.Tifrunner.gnm1.ann1.50MGD9 Arachis hypogaea HOM05D003837 ORTHO05D004751 4.4e-131 471.5 270 82.2
CANSAT56G1308 Cannabis sativa HOM05D003837 ORTHO05D004751 4.4e-131 471.5 270 82.2
MELO3C021202.2 Cucumis melo HOM05D003837 ORTHO05D004751 5.8e-131 471.1 270 82.2
Sed0000473 Sechium edule HOM05D003837 ORTHO05D004751 2.2e-130 469.2 270 82.6
Cc02_g38180 Coffea canephora HOM05D003837 ORTHO05D004751 3.7e-130 468.4 270 82.6
Lj9A584G62 Lonicera japonica HOM05D003837 ORTHO05D004751 1.4e-129 466.5 269 82.5
QL04p053649 Quercus lobata HOM05D003837 ORTHO05D004751 1.9e-129 466.1 269 82.2
GSVIVG01026949001 Vitis vinifera HOM05D003837 ORTHO05D004751 1.9e-129 466.1 270 83.3
arahy.Tifrunner.gnm1.ann1.MHF7VE Arachis hypogaea HOM05D003837 ORTHO05D004751 3.2e-129 465.3 270 81.1
Medtr7g077870 Medicago truncatula HOM05D003837 ORTHO05D004751 5.4e-129 464.5 270 81.1
Glyma.18G234200 Glycine max HOM05D003837 ORTHO05D004751 9.2e-129 463.8 270 80.4
Ah.05g180500 Amaranthus hybridus HOM05D003837 ORTHO05D004751 1.2e-128 463.4 271 80.4
Dinv43830 Davidia involucrata HOM05D003837 ORTHO05D004751 1.2e-128 463.4 270 81.9
Lsat_1_v5_gn_7_4380 Lactuca sativa HOM05D003837 ORTHO05D004751 1.6e-128 463.0 267 82.4
unitig_61.g26385 Utricularia gibba HOM05D003837 ORTHO05D004751 2.7e-128 462.2 269 82.2
EL10Ac1g00400 Beta vulgaris HOM05D003837 ORTHO05D004751 3.5e-128 461.8 274 80.7
AUR62004375 Chenopodium quinoa HOM05D003837 ORTHO05D004751 4.6e-128 461.5 271 81.2
Phvul.008G061600 Phaseolus vulgaris HOM05D003837 ORTHO05D004751 4.6e-128 461.5 270 80.7
vmacro21886 Vaccinium macrocarpon HOM05D003837 ORTHO05D004751 4.6e-128 461.5 270 82.2
vmacro23130 Vaccinium macrocarpon HOM05D003837 ORTHO05D004751 4.6e-128 461.5 270 82.2
Potri.014G086100 Populus trichocarpa HOM05D003837 ORTHO05D004751 6.0e-128 461.1 270 81.9
AT2G45990 Arabidopsis thaliana HOM05D003837 ORTHO05D004751 7.8e-128 460.7 270 80.7
Psat3g107800 Pisum sativum HOM05D003837 ORTHO05D004751 7.8e-128 460.7 270 80.0
AL4G45220 Arabidopsis lyrata HOM05D003837 ORTHO05D004751 1.3e-127 459.9 270 80.4
Sp4g28060 Schrenkiella parvula HOM05D003837 ORTHO05D004751 1.7e-127 459.5 270 80.7
PGR042G3540 Punica granatum HOM05D003837 ORTHO05D004751 2.3e-127 459.1 271 81.2
VMungo1383G2611 Vigna mungo HOM05D003837 ORTHO05D004751 2.3e-127 459.1 268 79.5
BcaC02g12159 Brassica carinata HOM05D003837 ORTHO05D004751 3.0e-127 458.8 270 80.0
RcHm_v2.0_Chr1g0356141 Rosa chinensis HOM05D003837 ORTHO05D004751 3.0e-127 458.8 270 80.4
FAN10G2900 Fragaria x ananassa HOM05D003837 ORTHO05D004751 5.1e-127 458.0 270 79.6
Manes.01G255600 Manihot esculenta HOM05D003837 ORTHO05D004751 5.1e-127 458.0 264 82.6
AUR62022582 Chenopodium quinoa HOM05D003837 ORTHO05D004751 6.6e-127 457.6 271 80.1
Thhalv10001586m.g Eutrema salsugineum HOM05D003837 ORTHO05D004751 6.6e-127 457.6 270 79.6
FvH4_7g14620 Fragaria vesca HOM05D003837 ORTHO05D004751 1.1e-126 456.8 270 79.6
FAN06G1674 Fragaria x ananassa HOM05D003837 ORTHO05D004751 1.1e-126 456.8 270 79.6
Rhsim01G0163300 Rhododendron simsii HOM05D003837 ORTHO05D004751 1.1e-126 456.8 270 80.0
MD01G1065200 Malus domestica HOM05D003837 ORTHO05D004751 1.5e-126 456.4 270 79.3
Sabra14G0062400 Salix brachista HOM05D003837 ORTHO05D004751 1.5e-126 456.4 270 80.4
Atru.chr5.511 Acer truncatum HOM05D003837 ORTHO05D004751 2.5e-126 455.7 270 79.3
Eucgr.E01551 Eucalyptus grandis HOM05D003837 ORTHO05D004751 2.5e-126 455.7 270 80.0
C04p06910 Brassica napus HOM05D003837 ORTHO05D004751 4.3e-126 454.9 270 79.3
BraA05t19561Z Brassica rapa HOM05D003837 ORTHO05D004751 4.3e-126 454.9 270 79.3
A05p05980 Brassica napus HOM05D003837 ORTHO05D004751 5.6e-126 454.5 270 79.3
TAR629G3438 Trochodendron aralioides HOM05D003837 ORTHO05D004751 7.3e-126 454.1 270 80.4
Ca_07930_v3 Cicer arietinum L. HOM05D003837 ORTHO05D004751 9.6e-126 453.8 282 75.9
Aa31LG1G27400 Aethionema arabicum HOM05D003837 ORTHO05D004751 1.6e-125 453.0 270 79.6
Carub.0004s2869 Capsella rubella HOM05D003837 ORTHO05D004751 2.1e-125 452.6 270 79.6
FAN03G2321 Fragaria x ananassa HOM05D003837 ORTHO05D004751 2.8e-125 452.2 276 78.3
Rhsim01G0190400 Rhododendron simsii HOM05D003837 ORTHO05D004751 2.8e-125 452.2 270 79.3
FAN01G0904 Fragaria x ananassa HOM05D003837 ORTHO05D004751 3.6e-125 451.8 270 79.3
FAN10G2259 Fragaria x ananassa HOM05D003837 ORTHO05D004751 3.6e-125 451.8 276 77.9
CANSAT56G2444 Cannabis sativa HOM05D003837 ORTHO05D004751 4.7e-125 451.4 270 79.6
FAN01G2145 Fragaria x ananassa HOM05D003837 ORTHO05D004751 6.2e-125 451.1 270 78.1
MBI18_g02839_MAGBIO Magnolia biondii HOM05D003837 ORTHO05D004751 8.1e-125 450.7 270 78.5
FAN06G4414 Fragaria x ananassa HOM05D003837 ORTHO05D004751 1.1e-124 450.3 276 77.9
arahy.Tifrunner.gnm1.ann1.1HB2SZ Arachis hypogaea HOM05D003837 ORTHO05D004751 5.2e-124 448.0 270 77.0
CARHR141260 Cardamine hirsuta HOM05D003837 ORTHO05D004751 5.2e-124 448.0 270 78.5
arahy.Tifrunner.gnm1.ann1.AX1MHW Arachis hypogaea HOM05D003837 ORTHO05D004751 6.8e-124 447.6 270 78.9
Lj1g0003798 Lotus japonicus HOM05D003837 ORTHO05D004751 1.2e-123 446.8 270 77.8
Lalb_Chr04g0253801 Lupinus albus HOM05D003837 ORTHO05D004751 1.5e-123 446.4 268 77.6
arahy.Tifrunner.gnm1.ann1.SJDP6S Arachis hypogaea HOM05D003837 ORTHO05D004751 2.0e-123 446.0 270 77.0
BolC4t22312H Brassica oleracea HOM05D003837 ORTHO05D004751 5.8e-123 444.5 286 74.8
Haze_15524 Corylus avellana HOM05D003837 ORTHO05D004751 5.8e-123 444.5 307 73.0
TPR.G37852 Trifolium pratense HOM05D003837 ORTHO05D004751 1.7e-122 443.0 270 76.3
PSO017G1131 Papaver somniferum HOM05D003837 ORTHO05D004751 2.9e-122 442.2 270 76.7
Medtr7g077880 Medicago truncatula HOM05D003837 ORTHO05D004751 1.1e-121 440.3 270 75.9
Glyma.18G234300 Glycine max HOM05D003837 ORTHO05D004751 1.9e-121 439.5 270 75.9
Prupe.2G172200 Prunus persica HOM05D003837 ORTHO05D004751 5.4e-121 438.0 270 78.1
Ciclev10021689m.g Citrus clementina HOM05D003837 ORTHO05D004751 1.2e-120 436.8 270 77.0
Ciclev10021690m.g Citrus clementina HOM05D003837 ORTHO05D004751 1.2e-120 436.8 270 78.1
Lalb_Chr10g0095951 Lupinus albus HOM05D003837 ORTHO05D004751 1.2e-120 436.8 268 76.5
DCAR_025196 Daucus carota HOM05D003837 ORTHO05D004751 2.1e-120 436.0 270 77.8
Psat3g107760 Pisum sativum HOM05D003837 ORTHO05D004751 2.1e-120 436.0 270 75.6
Actinidia02836 Actinidia chinensis HOM05D003837 ORTHO05D004751 3.5e-120 435.3 276 77.9
FvH4_7g14540 Fragaria vesca HOM05D003837 ORTHO05D004751 1.3e-119 433.3 270 77.0
ClCG06G003610 Citrullus lanatus HOM05D003837 ORTHO05D004751 3.9e-119 431.8 270 77.0
PSO063G2236 Papaver somniferum HOM05D003837 ORTHO05D004751 5.1e-119 431.4 262 77.1
TPR.G37767 Trifolium pratense HOM05D003837 ORTHO05D004751 4.3e-118 428.3 270 74.8
CsaV3_6G000640 Cucumis sativus L. HOM05D003837 ORTHO05D004751 1.3e-117 426.8 270 76.7
Phvul.008G061500 Phaseolus vulgaris HOM05D003837 ORTHO05D004751 1.6e-117 426.4 268 75.0
TWI14G0320 Tripterygium wilfordii HOM05D003837 ORTHO05D004751 1.6e-117 426.4 270 76.7
Ca_07931_v3 Cicer arietinum L. HOM05D003837 ORTHO05D004751 3.6e-117 425.2 270 73.0
HanXRQChr04g0121181 Helianthus annuus HOM05D003837 ORTHO05D004751 4.8e-117 424.9 270 76.3
Os07g0418000 Oryza sativa ssp. japonica HOM05D003837 ORTHO05D004751 4.8e-117 424.9 269 73.6
Peaxi162Scf00008g02421 Petunia axillaris HOM05D003837 ORTHO05D004751 2.4e-116 422.5 270 78.9
THA.LOC104802037 Tarenaya hassleriana HOM05D003837 ORTHO05D004751 2.4e-116 422.5 270 75.6
FAN06G3658 Fragaria x ananassa HOM05D003837 ORTHO05D004751 5.3e-116 421.4 270 75.2
arahy.Tifrunner.gnm1.ann1.I86G4G Arachis hypogaea HOM05D003837 ORTHO05D004751 9.0e-116 420.6 245 81.2
HPP92_025965 Vanilla planifolia HOM05D003837 ORTHO05D004751 3.4e-115 418.7 270 73.0
VMungo1383G0868 Vigna mungo HOM05D003837 ORTHO05D004751 7.6e-115 417.5 270 74.4
Zm00001eb094870 Zea mays HOM05D003837 ORTHO05D004751 1.3e-114 416.8 269 72.5
Cpa.g.sc11.20 Carica papaya HOM05D003837 ORTHO05D004751 1.7e-114 416.4 270 74.4
COL.COLO4_12726 Corchorus olitorius HOM05D003837 ORTHO05D004751 2.2e-114 416.0 270 76.7
RcHm_v2.0_Chr1g0356101 Rosa chinensis HOM05D003837 ORTHO05D004751 2.9e-114 415.6 270 73.7
SEGI_21942 Sequoiadendron giganteum HOM05D003837 ORTHO05D004751 4.9e-114 414.8 270 71.1
Cfa003906 Carpinus fangiana HOM05D003837 ORTHO05D004751 1.9e-113 412.9 253 79.4
FAN06G0309 Fragaria x ananassa HOM05D003837 ORTHO05D004751 3.2e-113 412.1 270 73.7
Hund27264 Selenicereus undatus HOM05D003837 ORTHO05D004751 1.3e-111 406.8 270 71.9
CDE05G2325 Ceratophyllum demersum HOM05D003837 ORTHO05D004751 3.9e-111 405.2 267 72.3
HanXRQChr04g0121171 Helianthus annuus HOM05D003837 ORTHO05D004751 3.9e-111 405.2 270 72.6
AagrBONN_evm.TU.Sc2ySwM_228.2910 Anthoceros agrestis HOM05D003837 ORTHO05D004751 3.1e-108 395.6 270 67.4
AagrBONN_evm.TU.Sc2ySwM_228.5133 Anthoceros agrestis HOM05D003837 ORTHO05D004751 4.0e-108 395.2 269 67.7
FAN01G2925 Fragaria x ananassa HOM05D003837 ORTHO05D004751 4.0e-108 395.2 277 69.0
Ca_07932_v3 Cicer arietinum L. HOM05D003837 ORTHO05D004751 6.9e-108 394.4 270 69.3
Nn1g01565 Nelumbo nucifera HOM05D003837 ORTHO05D004751 1.2e-107 393.7 270 71.5
FAN10G3579 Fragaria x ananassa HOM05D003837 ORTHO05D004751 1.5e-107 393.3 271 69.7
FAN06G3536 Fragaria x ananassa HOM05D003837 ORTHO05D004751 4.5e-107 391.7 277 67.5
FAN10G0266 Fragaria x ananassa HOM05D003837 ORTHO05D004751 4.5e-107 391.7 271 69.4
SMO118G0280 Selaginella moellendorffii HOM05D003837 ORTHO05D004751 7.6e-107 391.0 268 66.4
FAN16G2327 Fragaria x ananassa HOM05D003837 ORTHO05D004751 3.8e-106 388.7 272 68.0
Pp3c23_10590 Physcomitrium patens HOM05D003837 ORTHO05D004751 3.8e-106 388.7 271 67.2
Pp3c11_2170 Physcomitrium patens HOM05D003837 ORTHO05D004751 1.4e-105 386.7 271 67.5
FvH4_3g44250 Fragaria vesca HOM05D003837 ORTHO05D004751 1.9e-105 386.3 272 67.6
arahy.Tifrunner.gnm1.ann1.438NR4 Arachis hypogaea HOM05D003837 ORTHO05D004751 4.2e-105 385.2 273 70.7
Mapoly0002s0196 Marchantia polymorpha HOM05D003837 ORTHO05D004751 4.2e-105 385.2 270 65.9
ATR0680G377 Amborella trichopoda HOM05D003837 ORTHO05D004751 7.1e-105 384.4 236 75.8
FAN06G3952 Fragaria x ananassa HOM05D003837 ORTHO05D004751 7.1e-105 384.4 277 66.8
FAN11G2601 Fragaria x ananassa HOM05D003837 ORTHO05D004751 7.1e-105 384.4 272 67.3
Lj1g0022323 Lotus japonicus HOM05D003837 ORTHO05D004751 6.7e-103 377.9 237 75.5
RcHm_v2.0_Chr1g0356011 Rosa chinensis HOM05D003837 ORTHO05D004751 1.4e-100 370.2 271 64.9
RcHm_v2.0_Chr1g0356051 Rosa chinensis HOM05D003837 ORTHO05D004751 1.5e-99 366.7 272 65.4
Atru.chr5.512 Acer truncatum HOM05D003837 ORTHO05D004751 2.0e-99 366.3 213 80.8
RcHm_v2.0_Chr1g0356041 Rosa chinensis HOM05D003837 ORTHO05D004751 2.6e-99 365.9 271 64.6
RcHm_v2.0_Chr1g0355961 Rosa chinensis HOM05D003837 ORTHO05D004751 3.8e-98 362.1 272 64.3
Actinidia02835 Actinidia chinensis HOM05D003837 ORTHO05D004751 8.7e-95 350.9 198 84.8
AUR62004376 Chenopodium quinoa HOM05D003837 ORTHO05D004751 4.3e-94 348.6 211 78.7
Pp3c24_7060 Physcomitrium patens HOM05D003837 ORTHO05D004751 9.6e-94 347.4 250 65.6
CBR_g30756 Chara braunii HOM05D003837 ORTHO05D004751 7.6e-91 337.8 295 58.0
FAN10G2608 Fragaria x ananassa HOM05D003837 ORTHO05D004751 3.0e-87 325.9 190 78.9
Glyma.09G258500 Glycine max HOM05D003837 ORTHO05D004751 6.7e-87 324.7 218 72.5
Sc26g0000870 Simmondsia chinensis HOM05D003837 ORTHO05D004751 4.3e-86 322.0 188 80.9
SMO118G0457 Selaginella moellendorffii HOM05D003837 ORTHO05D004751 4.6e-80 302.0 270 55.9
CSS0003015 Camellia sinensis var. sinensis HOM05D003837 ORTHO05D004751 1.3e-61 240.7 190 63.2
FvH4_7g14570 Fragaria vesca HOM05D003837 ORTHO05D004751 4.8e-61 238.8 143 79.0
vmacro20932 Vaccinium macrocarpon HOM05D003837 ORTHO05D004751 1.1e-57 227.6 182 65.9
FAN10G2382 Fragaria x ananassa HOM05D003837 ORTHO05D004751 1.6e-56 223.8 134 76.9
Glyma.09G258400 Glycine max HOM05D003837 ORTHO05D004751 4.8e-53 212.2 134 73.1
Cre06.g278117 Chlamydomonas reinhardtii HOM05D003837 ORTHO05D004751 8.3e-53 211.5 271 40.6
RcHm_v2.0_Chr1g0356441 Rosa chinensis HOM05D003837 ORTHO05D004751 4.1e-52 209.1 189 60.8
MCO05G263 Micromonas commoda HOM05D003837 ORTHO05D004751 9.4e-49 198.0 272 39.7
SGA_v2.0_scaffold95G28830 Striga asiatica HOM05D003837 ORTHO05D004751 1.2e-48 197.6 270 44.8
Cre13.g578900 Chlamydomonas reinhardtii HOM05D003837 ORTHO05D004751 7.5e-38 161.8 279 34.1
FvH4_7g14571 Fragaria vesca HOM05D003837 ORTHO05D004751 3.5e-35 152.9 88 80.7
arahy.Tifrunner.gnm1.ann1.B43A3C Arachis hypogaea HOM05D003837 ORTHO05D004751 7.8e-35 151.8 129 62.0
MD09G1245400 Malus domestica HOM05D003837 ORTHO05D004751 2.3e-34 150.2 82 85.4
Glyma.04G165300 Glycine max HOM05D003837 ORTHO05D004751 4.0e-31 139.4 109 64.2
MD09G1245300 Malus domestica HOM05D003837 ORTHO05D004751 2.2e-29 133.7 76 78.9
arahy.Tifrunner.gnm1.ann1.DBMD67 Arachis hypogaea HOM05D003837 ORTHO05D004751 1.6e-24 117.5 69 79.7
RcHm_v2.0_Chr1g0356021 Rosa chinensis HOM05D003837 ORTHO05D004751 3.4e-22 109.8 108 53.7
Actinidia37295 Actinidia chinensis HOM05D003837 ORTHO05D004751 4.1e-20 102.8 68 72.1
Ciclev10006592m.g Citrus clementina HOM05D003837 ORTHO05D033091 1.3e-18 97.8 68 64.7
A06p08350 Brassica napus HOM05D003837 ORTHO05D099682 3.4e-14 83.2 65 61.5
Ciclev10013186m.g Citrus clementina HOM05D003837 ORTHO05D004751 5.8e-14 82.4 69 59.4
AUR62043290 Chenopodium quinoa HOM05D008055 ORTHO05D009927 6.4e-13 79.0 89 52.8
A05p05950 Brassica napus HOM05D003837 ORTHO05D033091 8.4e-13 78.6 50 70.0
BraA05t19558Z Brassica rapa HOM05D003837 ORTHO05D033091 8.4e-13 78.6 50 70.0
BolC9t54120H Brassica oleracea HOM05D003837 ORTHO05D033622 1.6e-11 74.3 57 63.2
BolC7t40474H Brassica oleracea HOM05D003837 ORTHO05D033622 2.7e-11 73.6 57 61.4
C09p56440 Brassica napus HOM05D003837 ORTHO05D101394 2.8e-08 63.5 50 62.0
TPR.G11699 Trifolium pratense HOM05D004925 ORTHO05D005643 9.9e-06 55.1 40 62.5


User provided reference genes

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