Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow3G2592 Salvia bowleyana HOM05D004622 ORTHO05D005431 5.1e-100 367.9 201 100.0
Cfa010005 Carpinus fangiana HOM05D004622 ORTHO05D005431 9.6e-22 107.8 226 37.2
Oeu035435.1 Olea europaea HOM05D004622 ORTHO05D005431 1.2e-21 107.5 256 33.6
SalBow6G5234 Salvia bowleyana HOM05D004622 ORTHO05D005431 8.1e-21 104.8 201 38.3
CSS0048557 Camellia sinensis var. sinensis HOM05D004622 ORTHO05D005431 1.1e-20 104.4 228 35.1
Oeu034007.1 Olea europaea HOM05D004622 ORTHO05D005431 1.8e-20 103.6 266 33.1
Gohir.A07G110600 Gossypium hirsutum HOM05D004622 ORTHO05D005431 1.2e-19 100.9 244 34.0
Haze_23364 Corylus avellana HOM05D004622 ORTHO05D005431 1.5e-19 100.5 228 36.8
Glyma.13G315900 Glycine max HOM05D004622 ORTHO05D005431 2.6e-19 99.8 200 38.5
Gohir.D07G114300 Gossypium hirsutum HOM05D004622 ORTHO05D005431 5.8e-19 98.6 235 34.5
TAR636G1327 Trochodendron aralioides HOM05D004622 ORTHO05D005431 7.6e-19 98.2 259 29.3
VMungo1080G1565 Vigna mungo HOM05D004622 ORTHO05D005431 3.8e-18 95.9 188 37.2
Migut.N02485 Erythranthe guttata HOM05D004622 ORTHO05D005431 4.9e-18 95.5 264 31.4
Thecc.09G281500 Theobroma cacao HOM05D004622 ORTHO05D005431 6.4e-18 95.1 253 31.2
Actinidia07251 Actinidia chinensis HOM05D000892 ORTHO05D005431 1.4e-17 94.0 225 34.7
CiPaw.13G134900 Carya illinoinensis HOM05D004622 ORTHO05D005431 1.4e-17 94.0 251 33.1
Gorai.001G122600 Gossypium raimondii HOM05D004622 ORTHO05D005431 5.4e-17 92.0 225 34.7
Glyma.12G185600 Glycine max HOM05D004622 ORTHO05D005431 7.1e-17 91.7 200 36.5
Peaxi162Scf00040g00012 Petunia axillaris HOM05D004622 ORTHO05D005431 7.1e-17 91.7 259 29.3
MSTRG.18765 Avicennia marina HOM05D004622 ORTHO05D005431 1.2e-16 90.9 254 30.3
Nitab4.5_0000755g0020 Nicotiana tabacum HOM05D004622 ORTHO05D005431 1.2e-16 90.9 282 29.8
TAR633G0983 Trochodendron aralioides HOM05D004622 ORTHO05D005431 1.6e-16 90.5 272 31.2
Rhsim01G0204900 Rhododendron simsii HOM05D004622 ORTHO05D005431 3.5e-16 89.4 231 34.6
MELO3C004685.2 Cucumis melo HOM05D004622 ORTHO05D005431 4.6e-16 89.0 242 34.3
Migut.D02437 Erythranthe guttata HOM05D004622 ORTHO05D005431 4.6e-16 89.0 216 34.7
QL01p012122 Quercus lobata HOM05D004622 ORTHO05D005431 6.0e-16 88.6 242 31.8
Duzib170G0788 Durio zibethinus HOM05D004622 ORTHO05D005431 7.8e-16 88.2 272 31.6
MSTRG.12372 Avicennia marina HOM05D004622 ORTHO05D005431 1.3e-15 87.4 272 29.0
Nitab4.5_0006738g0040 Nicotiana tabacum HOM05D004622 ORTHO05D005431 1.7e-15 87.0 287 28.2
FAN11G1623 Fragaria x ananassa HOM05D004622 ORTHO05D005431 2.3e-15 86.7 254 30.3
TWI79G1499 Tripterygium wilfordii HOM05D004622 ORTHO05D005431 2.3e-15 86.7 248 31.9
DCAR_010339 Daucus carota HOM05D004622 ORTHO05D005431 3.9e-15 85.9 232 33.2
FvH4_3g25120 Fragaria vesca HOM05D004622 ORTHO05D005431 3.9e-15 85.9 254 30.3
CsaV3_1G015000 Cucumis sativus L. HOM05D004622 ORTHO05D005431 5.1e-15 85.5 237 34.2
CsaV3_1G015910 Cucumis sativus L. HOM05D004622 ORTHO05D005431 5.1e-15 85.5 237 34.2
TWI31G0739 Tripterygium wilfordii HOM05D004622 ORTHO05D005431 5.1e-15 85.5 240 31.2
unitig_0.g1476 Utricularia gibba HOM05D000020 ORTHO05D000543 5.1e-15 85.5 202 35.1
ClCG01G012170 Citrullus lanatus HOM05D004622 ORTHO05D005431 6.6e-15 85.1 229 32.3
Potri.009G162800 Populus trichocarpa HOM05D004622 ORTHO05D005431 6.6e-15 85.1 242 31.0
MD03G1147600 Malus domestica HOM05D004622 ORTHO05D005431 1.1e-14 84.3 286 30.4
Ciclev10028879m.g Citrus clementina HOM05D004622 ORTHO05D005431 1.5e-14 84.0 80 52.5
Lalb_Chr03g0028141 Lupinus albus HOM05D004622 ORTHO05D005431 1.5e-14 84.0 228 32.9
Prupe.6G132300 Prunus persica HOM05D004622 ORTHO05D005431 1.9e-14 83.6 269 30.5
Sabra09G0127000 Salix brachista HOM05D004622 ORTHO05D005431 1.9e-14 83.6 252 31.3
Phvul.005G123200 Phaseolus vulgaris HOM05D004622 ORTHO05D005431 2.5e-14 83.2 193 36.3
Lj3g0000197 Lotus japonicus HOM05D004622 ORTHO05D005431 3.3e-14 82.8 221 36.7
Nn2g14192 Nelumbo nucifera HOM05D004622 ORTHO05D005431 3.3e-14 82.8 270 29.3
Duzib168G0112 Durio zibethinus HOM05D004622 ORTHO05D005431 5.6e-14 82.0 267 28.8
RcHm_v2.0_Chr5g0045661 Rosa chinensis HOM05D004622 ORTHO05D005431 7.3e-14 81.6 256 30.9
RcHm_v2.0_Chr5g0046341 Rosa chinensis HOM05D004622 ORTHO05D005431 7.3e-14 81.6 256 30.9
CAN.G1524.7 Capsicum annuum HOM05D004622 ORTHO05D005431 1.3e-13 80.9 64 60.9
PGSC0003DMG400026354 Solanum tuberosum HOM05D004622 ORTHO05D005431 1.3e-13 80.9 87 50.6
MSTRG.21036 Avicennia marina HOM05D004622 ORTHO05D005431 1.6e-13 80.5 264 29.2
Cpa.g.sc195.5 Carica papaya HOM05D004622 ORTHO05D005431 2.1e-13 80.1 228 32.9
MBI17_g08325_MAGBIO Magnolia biondii HOM05D004622 ORTHO05D005431 2.1e-13 80.1 267 29.6
Manes.11G162600 Manihot esculenta HOM05D004622 ORTHO05D005431 2.1e-13 80.1 262 29.0
Aqoxy2G01109 Aquilegia oxysepala HOM05D004622 ORTHO05D005431 3.6e-13 79.3 278 29.9
Potri.004G201500 Populus trichocarpa HOM05D004622 ORTHO05D005431 3.6e-13 79.3 260 29.2
unitig_27.g25015 Utricularia gibba HOM05D004622 ORTHO05D005431 3.6e-13 79.3 93 47.3
Lsat_1_v5_gn_2_59400 Lactuca sativa HOM05D004622 ORTHO05D005431 4.8e-13 79.0 204 35.8
PSO384G0540 Papaver somniferum HOM05D004622 ORTHO05D005431 4.8e-13 79.0 280 28.9
Dinv22834 Davidia involucrata HOM05D000892 ORTHO05D000750 6.2e-13 78.6 85 51.8
Manes.04G003000 Manihot esculenta HOM05D004622 ORTHO05D005431 6.2e-13 78.6 257 31.1
CANSAT54G2229 Cannabis sativa HOM05D004622 ORTHO05D005431 8.1e-13 78.2 270 30.0
Ca_01655_v3 Cicer arietinum L. HOM05D004622 ORTHO05D005431 8.1e-13 78.2 243 32.9
PSO339G0545 Papaver somniferum HOM05D004622 ORTHO05D005431 8.1e-13 78.2 285 29.5
Solyc11g068530.1 Solanum lycopersicum HOM05D004622 ORTHO05D005431 8.1e-13 78.2 292 27.7
MD11G1166300 Malus domestica HOM05D004622 ORTHO05D005431 1.1e-12 77.8 70 57.1
HPP92_009743 Vanilla planifolia HOM05D004622 ORTHO05D005431 1.8e-12 77.0 172 36.6
Cpa.g.sc195.4 Carica papaya HOM05D004622 ORTHO05D005431 2.4e-12 76.6 69 56.5
Lj2C965T2 Lonicera japonica HOM05D004622 ORTHO05D005431 2.4e-12 76.6 111 40.5
Sopen11g027250 Solanum pennellii HOM05D004622 ORTHO05D005431 3.1e-12 76.3 299 29.8
PGSC0003DMG400005882 Solanum tuberosum HOM05D004622 ORTHO05D005431 3.1e-12 76.3 68 54.4
HanXRQChr11g0324161 Helianthus annuus HOM05D004622 ORTHO05D005431 4.0e-12 75.9 90 50.0
CiPaw.14G099300 Carya illinoinensis HOM05D004622 ORTHO05D005431 6.9e-12 75.1 137 35.8
Medtr2g086590 Medicago truncatula HOM05D004622 ORTHO05D005431 6.9e-12 75.1 263 29.3
Sopen06g030720 Solanum pennellii HOM05D004622 ORTHO05D005431 6.9e-12 75.1 68 52.9
TWI75G1018 Tripterygium wilfordii HOM05D004622 ORTHO05D005431 6.9e-12 75.1 68 52.9
SGA_v2.0_scaffold22G09855 Striga asiatica HOM05D004622 ORTHO05D005431 1.2e-11 74.3 212 34.0
CSS0039489 Camellia sinensis var. sinensis HOM05D004622 ORTHO05D005431 2.0e-11 73.6 245 29.8
Glyma.12G090100 Glycine max HOM05D004622 ORTHO05D005431 2.0e-11 73.6 215 32.6
Cc01_g09000 Coffea canephora HOM05D004622 ORTHO05D005431 3.4e-11 72.8 129 38.8
CAN.G919.33 Capsicum annuum HOM05D004622 ORTHO05D005431 5.8e-11 72.0 246 29.3
Solyc06g074270.1 Solanum lycopersicum HOM05D004622 ORTHO05D005431 5.8e-11 72.0 72 50.0
Eucgr.B03842 Eucalyptus grandis HOM05D004622 ORTHO05D005431 7.6e-11 71.6 104 42.3
GSVIVG01036110001 Vitis vinifera HOM05D004622 ORTHO05D005431 7.6e-11 71.6 126 38.9
Duzib177G0559 Durio zibethinus HOM05D006966 ORTHO05D008111 9.9e-11 71.2 87 47.1
SGA_v2.0_scaffold295G47519 Striga asiatica HOM05D004622 ORTHO05D005431 9.9e-11 71.2 91 47.3
HPP92_006359 Vanilla planifolia HOM05D004622 ORTHO05D005431 9.9e-11 71.2 202 33.7
ClCG02G022240 Citrullus lanatus HOM05D004622 ORTHO05D005431 1.3e-10 70.9 237 31.6
Glyma.11G182500 Glycine max HOM05D004622 ORTHO05D005431 1.3e-10 70.9 203 31.5
DCAR_012203 Daucus carota HOM05D004622 ORTHO05D005431 1.7e-10 70.5 236 29.7
FAN14G0100 Fragaria x ananassa HOM05D006966 ORTHO05D008111 2.2e-10 70.1 151 35.1
FAN14G4059 Fragaria x ananassa HOM05D006966 ORTHO05D008111 2.2e-10 70.1 151 35.1
Nitab4.5_0003661g0010 Nicotiana tabacum HOM05D004622 ORTHO05D005431 2.2e-10 70.1 100 44.0
Sc21g0007040 Simmondsia chinensis HOM05D004622 ORTHO05D005431 3.8e-10 69.3 81 44.4
Atru.chr3.3214 Acer truncatum HOM05D004622 ORTHO05D005431 6.4e-10 68.6 89 39.3
FvH4_6g05230 Fragaria vesca HOM05D006966 ORTHO05D008111 6.4e-10 68.6 151 35.1
FAN05G0025 Fragaria x ananassa HOM05D006966 ORTHO05D008111 6.4e-10 68.6 151 35.1
FAN05G1324 Fragaria x ananassa HOM05D006966 ORTHO05D008111 6.4e-10 68.6 151 35.1
FAN05G1352 Fragaria x ananassa HOM05D006966 ORTHO05D008111 6.4e-10 68.6 151 35.1
FAN09G4667 Fragaria x ananassa HOM05D006966 ORTHO05D008111 6.4e-10 68.6 122 39.3
Nitab4.5_0001216g0120 Nicotiana tabacum HOM05D004622 ORTHO05D005431 6.4e-10 68.6 76 48.7
unitig_699.g19154 Utricularia gibba HOM05D004622 ORTHO05D005431 6.4e-10 68.6 100 42.0
Actinidia24220 Actinidia chinensis HOM05D004622 ORTHO05D005431 1.4e-09 67.4 188 31.9
Sed0001344 Sechium edule HOM05D004622 ORTHO05D005431 1.4e-09 67.4 67 49.3
ATR0820G124 Amborella trichopoda HOM05D004622 ORTHO05D005431 1.9e-09 67.0 72 45.8
MELO3C014501.2 Cucumis melo HOM05D004622 ORTHO05D005431 3.2e-09 66.2 246 29.7
Glyma.03G240900 Glycine max HOM05D006966 ORTHO05D008111 4.2e-09 65.9 109 41.3
Glyma.19G238400 Glycine max HOM05D006966 ORTHO05D008111 4.2e-09 65.9 107 41.1
HanXRQChr11g0346861 Helianthus annuus HOM05D004622 ORTHO05D005431 4.2e-09 65.9 164 31.7
FAN02G1750 Fragaria x ananassa HOM05D006966 ORTHO05D008111 7.1e-09 65.1 92 39.1
VMungo0540G1150 Vigna mungo HOM05D006966 ORTHO05D008111 7.1e-09 65.1 108 38.9
CsaV3_6G038370 Cucumis sativus L. HOM05D004622 ORTHO05D005431 9.3e-09 64.7 185 30.3
ATR0580G269 Amborella trichopoda HOM05D006966 ORTHO05D008111 1.6e-08 63.9 101 37.6
Lsat_1_v5_gn_1_59220 Lactuca sativa HOM05D004622 ORTHO05D005431 2.7e-08 63.2 75 45.3
Medtr4g052880 Medicago truncatula HOM05D004622 ORTHO05D005431 2.7e-08 63.2 220 31.8
THA.LOC104799551 Tarenaya hassleriana HOM05D004622 ORTHO05D005431 2.7e-08 63.2 193 33.2
Gohir.A08G212500 Gossypium hirsutum HOM05D006966 ORTHO05D008111 3.5e-08 62.8 88 38.6
Gohir.A09G096001 Gossypium hirsutum HOM05D004622 ORTHO05D005431 3.5e-08 62.8 214 30.4
Thecc.05G299500 Theobroma cacao HOM05D006966 ORTHO05D008111 3.5e-08 62.8 57 54.4
Gohir.D08G229500 Gossypium hirsutum HOM05D006966 ORTHO05D008111 4.6e-08 62.4 88 38.6
Gorai.004G243700 Gossypium raimondii HOM05D006966 ORTHO05D008111 4.6e-08 62.4 88 38.6
SGA_v2.0_scaffold177G39416 Striga asiatica HOM05D004622 ORTHO05D005431 4.6e-08 62.4 78 47.4
Cc02_g32560 Coffea canephora HOM05D006966 ORTHO05D008111 6.0e-08 62.0 85 37.6
Actinidia35466 Actinidia chinensis HOM05D004622 ORTHO05D005431 1.0e-07 61.2 109 39.4
Dinv22908 Davidia involucrata HOM05D006966 ORTHO05D008111 1.0e-07 61.2 76 35.5
PSO801G0264 Papaver somniferum HOM05D004622 ORTHO05D005431 1.0e-07 61.2 102 43.1
Ca_09380_v3 Cicer arietinum L. HOM05D006966 ORTHO05D008111 1.3e-07 60.8 59 50.8
Duzib128G0678 Durio zibethinus HOM05D006966 ORTHO05D008111 1.3e-07 60.8 117 35.9
ECA248G3754 Erigeron canadensis HOM05D006357 ORTHO05D007925 1.3e-07 60.8 88 43.2
Gohir.D09G095666 Gossypium hirsutum HOM05D004622 ORTHO05D005431 1.8e-07 60.5 213 29.1
Lj1g0017885 Lotus japonicus HOM05D006966 ORTHO05D008111 1.8e-07 60.5 122 34.4
Lj3g0018609 Lotus japonicus HOM05D004622 ORTHO05D005431 1.8e-07 60.5 78 43.6
RcHm_v2.0_Chr3g0453941 Rosa chinensis HOM05D006966 ORTHO05D008111 1.8e-07 60.5 121 35.5
arahy.Tifrunner.gnm1.ann1.3A5YKQ Arachis hypogaea HOM05D006966 ORTHO05D008111 2.3e-07 60.1 78 41.0
MELO3C004314.2 Cucumis melo HOM05D006966 ORTHO05D008111 2.3e-07 60.1 65 41.5
Cpa.g.sc48.3 Carica papaya HOM05D006966 ORTHO05D008111 3.0e-07 59.7 76 38.2
CsaV3_2G004840 Cucumis sativus L. HOM05D006966 ORTHO05D008111 3.9e-07 59.3 64 42.2
Phvul.006G095100 Phaseolus vulgaris HOM05D006966 ORTHO05D008111 3.9e-07 59.3 106 37.7
arahy.Tifrunner.gnm1.ann1.72VZ3I Arachis hypogaea HOM05D004622 ORTHO05D005431 5.1e-07 58.9 54 50.0
CDE12G0371 Ceratophyllum demersum HOM05D004622 ORTHO05D005431 5.1e-07 58.9 71 43.7
Zm00001eb083800 Zea mays HOM05D004622 ORTHO05D005431 5.1e-07 58.9 73 45.2
Aqoxy4G02752 Aquilegia oxysepala HOM05D004622 ORTHO05D005431 6.7e-07 58.5 68 36.8
CSS0005342 Camellia sinensis var. sinensis HOM05D006966 ORTHO05D008111 6.7e-07 58.5 78 39.7
Lj9P680T20 Lonicera japonica HOM05D006966 ORTHO05D008111 6.7e-07 58.5 87 39.1
PGR102G1757 Punica granatum HOM05D004622 ORTHO05D005431 6.7e-07 58.5 144 34.0
Rhsim05G0145100 Rhododendron simsii HOM05D006966 ORTHO05D008111 6.7e-07 58.5 130 36.9
TAR633G0886 Trochodendron aralioides HOM05D006966 ORTHO05D008111 6.7e-07 58.5 82 40.2
Prupe.6G331500 Prunus persica HOM05D006966 ORTHO05D008111 1.1e-06 57.8 82 36.6
HPP92_003213 Vanilla planifolia HOM05D004622 ORTHO05D005431 1.1e-06 57.8 67 44.8
Os02g0534000 Oryza sativa ssp. japonica HOM05D004622 ORTHO05D005431 1.9e-06 57.0 59 47.5
Psat3g009600 Pisum sativum HOM05D006966 ORTHO05D008111 1.9e-06 57.0 107 36.4
TPR.G17219 Trifolium pratense HOM05D004622 ORTHO05D005431 1.9e-06 57.0 84 40.5
TPR.G33165 Trifolium pratense HOM05D006966 ORTHO05D008111 1.9e-06 57.0 78 34.6
Ciclev10002008m.g Citrus clementina HOM05D006966 ORTHO05D008111 2.5e-06 56.6 116 36.2
VMungo0720G1138 Vigna mungo HOM05D006966 ORTHO05D008111 2.5e-06 56.6 96 38.5
AL6G33410 Arabidopsis lyrata HOM05D004622 ORTHO05D005431 3.3e-06 56.2 200 28.5
Hma1.2p1_0666F.1_g199360 Hydrangea macrophylla HOM05D006966 ORTHO05D008111 4.3e-06 55.8 57 42.1
Lsat_1_v5_gn_6_38921 Lactuca sativa HOM05D000892 ORTHO05D000750 4.3e-06 55.8 77 46.8
Dinv40245 Davidia involucrata HOM05D000556 ORTHO05D008111 5.6e-06 55.5 77 39.0
Eucgr.H04442 Eucalyptus grandis HOM05D006966 ORTHO05D008111 5.6e-06 55.5 84 39.3
BcaB04g20143 Brassica carinata HOM05D006966 ORTHO05D008111 7.4e-06 55.1 66 40.9
DCAR_006166 Daucus carota HOM05D004622 ORTHO05D005431 7.4e-06 55.1 71 47.9
Lalb_Chr06g0167831 Lupinus albus HOM05D006966 ORTHO05D008111 7.4e-06 55.1 63 39.7


User provided reference genes

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