Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow3G2442 Salvia bowleyana HOM05D001043 ORTHO05D006432 2.1e-205 718.8 350 100.0
SalBow3G1676 Salvia bowleyana HOM05D001043 ORTHO05D006432 1.9e-179 632.5 314 98.7
SalBow3G3815 Salvia bowleyana HOM05D001043 ORTHO05D006432 1.9e-179 632.5 314 98.7
SGA_v2.0_scaffold12G06170 Striga asiatica HOM05D001043 ORTHO05D006432 4.0e-148 528.5 314 79.9
Oeu022683.1 Olea europaea HOM05D001043 ORTHO05D006432 1.2e-147 526.9 314 80.3
Oeu027753.1 Olea europaea HOM05D001043 ORTHO05D006432 3.7e-146 521.9 314 78.3
MSTRG.9754 Avicennia marina HOM05D001043 ORTHO05D006432 2.7e-141 505.8 314 77.7
Nitab4.5_0006064g0010 Nicotiana tabacum HOM05D001043 ORTHO05D006432 1.0e-140 503.8 353 68.8
Nitab4.5_0001586g0110 Nicotiana tabacum HOM05D001043 ORTHO05D006432 6.3e-138 494.6 314 74.2
Peaxi162Scf00180g00029 Petunia axillaris HOM05D001043 ORTHO05D006432 5.9e-136 488.0 353 66.9
Duzib212G0937 Durio zibethinus HOM05D001043 ORTHO05D006432 4.7e-133 478.4 314 72.0
CAN.G136.20 Capsicum annuum HOM05D001043 ORTHO05D006432 6.1e-133 478.0 346 65.6
Dinv05076 Davidia involucrata HOM05D001043 ORTHO05D006432 3.4e-131 472.2 322 68.9
PGSC0003DMG400016341 Solanum tuberosum HOM05D001043 ORTHO05D006432 4.9e-130 468.4 353 64.9
QL10p050774 Quercus lobata HOM05D001043 ORTHO05D006432 6.3e-130 468.0 313 71.6
Sopen06g018400 Solanum pennellii HOM05D001043 ORTHO05D006432 1.4e-129 466.8 353 65.4
CSS0043871 Camellia sinensis var. sinensis HOM05D001043 ORTHO05D006432 3.1e-129 465.7 314 69.1
Cc03_g12190 Coffea canephora HOM05D001043 ORTHO05D006432 4.1e-129 465.3 314 69.1
Thecc.04G175400 Theobroma cacao HOM05D001043 ORTHO05D006432 4.5e-128 461.8 314 70.1
Solyc06g053340.3 Solanum lycopersicum HOM05D001043 ORTHO05D006432 8.6e-127 457.6 353 64.0
Dinv44154 Davidia involucrata HOM05D001043 ORTHO05D006432 1.9e-126 456.4 305 69.2
Cfa015192 Carpinus fangiana HOM05D001043 ORTHO05D006432 1.8e-124 449.9 314 68.2
Gohir.D02G012400 Gossypium hirsutum HOM05D001043 ORTHO05D006432 1.5e-123 446.8 314 65.9
CSS0016711 Camellia sinensis var. sinensis HOM05D001043 ORTHO05D006432 3.4e-123 445.7 324 65.4
Gorai.005G015800 Gossypium raimondii HOM05D001043 ORTHO05D006432 4.4e-123 445.3 314 65.9
arahy.Tifrunner.gnm1.ann1.41HRQM Arachis hypogaea HOM05D001043 ORTHO05D006432 7.5e-123 444.5 324 64.5
Actinidia27085 Actinidia chinensis HOM05D001043 ORTHO05D006432 1.3e-122 443.7 314 65.9
Atru.chr4.1261 Acer truncatum HOM05D001043 ORTHO05D006432 1.7e-122 443.4 314 68.8
arahy.Tifrunner.gnm1.ann1.AV1GYT Arachis hypogaea HOM05D001043 ORTHO05D006432 1.7e-122 443.4 324 64.2
Gohir.A02G011600 Gossypium hirsutum HOM05D001043 ORTHO05D006432 4.9e-122 441.8 314 66.6
Medtr4g068130 Medicago truncatula HOM05D001043 ORTHO05D006432 4.1e-121 438.7 314 64.0
Duzib268G1183 Durio zibethinus HOM05D001043 ORTHO05D006432 7.0e-121 438.0 317 66.6
MD04G1044900 Malus domestica HOM05D001043 ORTHO05D006432 1.2e-120 437.2 314 65.3
Hma1.2p1_2415F.1_g321710 Hydrangea macrophylla HOM05D001043 ORTHO05D006432 2.0e-120 436.4 322 64.6
Lalb_Chr01g0003101 Lupinus albus HOM05D001043 ORTHO05D006432 2.0e-120 436.4 314 64.3
Rhsim02G0082300 Rhododendron simsii HOM05D001043 ORTHO05D006432 3.5e-120 435.6 314 67.8
Lj3g0012550 Lotus japonicus HOM05D001043 ORTHO05D006432 1.3e-119 433.7 314 64.3
Manes.11G123700 Manihot esculenta HOM05D001043 ORTHO05D006432 1.7e-119 433.3 316 64.9
PGR142G3303 Punica granatum HOM05D001043 ORTHO05D006432 2.3e-119 433.0 316 63.3
Rhsim02G0082200 Rhododendron simsii HOM05D001043 ORTHO05D006432 2.3e-119 433.0 314 67.2
Nn7g38145 Nelumbo nucifera HOM05D001043 ORTHO05D006432 6.6e-119 431.4 314 65.3
TAR365G1116 Trochodendron aralioides HOM05D001043 ORTHO05D006432 6.6e-119 431.4 314 63.7
FAN12G0575 Fragaria x ananassa HOM05D001043 ORTHO05D006432 1.1e-118 430.6 324 63.9
HanXRQChr03g0092911 Helianthus annuus HOM05D001043 ORTHO05D006432 1.5e-118 430.3 314 64.0
Cpa.g.sc9.315 Carica papaya HOM05D001043 ORTHO05D006432 1.9e-118 429.9 314 65.0
Potri.007G130900 Populus trichocarpa HOM05D001043 ORTHO05D006432 4.3e-118 428.7 314 64.6
FvH4_4g10900 Fragaria vesca HOM05D001043 ORTHO05D006432 5.6e-118 428.3 324 63.6
Lsat_1_v5_gn_3_125361 Lactuca sativa HOM05D001043 ORTHO05D006432 7.3e-118 427.9 324 63.0
FAN17G1903 Fragaria x ananassa HOM05D001043 ORTHO05D006432 2.8e-117 426.0 324 63.0
PSO832G3319 Papaver somniferum HOM05D001043 ORTHO05D006432 2.8e-117 426.0 314 65.0
THA.LOC104800885 Tarenaya hassleriana HOM05D001043 ORTHO05D006432 4.7e-117 425.2 314 63.4
TPR.G34197 Trifolium pratense HOM05D001043 ORTHO05D006432 4.7e-117 425.2 316 63.0
Eucgr.H00342 Eucalyptus grandis HOM05D001043 ORTHO05D006432 6.2e-117 424.9 314 64.0
Haze_01462 Corylus avellana HOM05D001043 ORTHO05D006432 1.1e-116 424.1 347 60.8
PSO210G3503 Papaver somniferum HOM05D001043 ORTHO05D006432 1.4e-116 423.7 314 64.3
RcHm_v2.0_Chr4g0406481 Rosa chinensis HOM05D001043 ORTHO05D006432 1.8e-116 423.3 315 64.1
Glyma.12G051100 Glycine max HOM05D001043 ORTHO05D006432 2.3e-116 422.9 314 62.1
Ciclev10020184m.g Citrus clementina HOM05D001043 ORTHO05D006432 3.1e-116 422.5 314 62.7
Potri.017G027000 Populus trichocarpa HOM05D001043 ORTHO05D006432 5.2e-116 421.8 314 63.7
TAR636G2727 Trochodendron aralioides HOM05D001043 ORTHO05D006432 3.4e-115 419.1 314 62.4
Lj3A0G11 Lonicera japonica HOM05D001043 ORTHO05D006432 3.7e-114 415.6 298 65.4
Sc19g0002850 Simmondsia chinensis HOM05D001043 ORTHO05D006432 1.4e-113 413.7 316 62.3
MBI07_g18520_MAGBIO Magnolia biondii HOM05D001043 ORTHO05D006432 2.4e-113 412.9 314 62.4
VMungo1127G0978 Vigna mungo HOM05D001043 ORTHO05D006432 2.4e-113 412.9 314 61.1
ECA240G3866 Erigeron canadensis HOM05D001043 ORTHO05D006432 7.0e-113 411.4 314 60.2
Ca_20798_v3 Cicer arietinum L. HOM05D001043 ORTHO05D006432 1.2e-112 410.6 322 63.0
CANSAT78G0880 Cannabis sativa HOM05D001043 ORTHO05D006432 2.1e-112 409.8 316 62.7
Sp1g04910 Schrenkiella parvula HOM05D001043 ORTHO05D006432 3.5e-112 409.1 314 61.8
AL1G16060 Arabidopsis lyrata HOM05D001043 ORTHO05D006432 6.0e-112 408.3 314 62.7
PGR142G0751 Punica granatum HOM05D001043 ORTHO05D006432 3.9e-111 405.6 316 60.1
Sabra07G0106300 Salix brachista HOM05D001043 ORTHO05D006432 3.9e-111 405.6 359 56.0
Sed0013039 Sechium edule HOM05D001043 ORTHO05D006432 1.1e-110 404.1 314 61.5
CARHR005620 Cardamine hirsuta HOM05D001043 ORTHO05D006432 1.5e-110 403.7 322 61.2
Thhalv10007687m.g Eutrema salsugineum HOM05D001043 ORTHO05D006432 2.1e-109 399.8 314 61.8
AT1G06110 Arabidopsis thaliana HOM05D001043 ORTHO05D006432 8.1e-109 397.9 315 61.0
Aqoxy5G00006 Aquilegia oxysepala HOM05D001043 ORTHO05D006432 1.4e-108 397.1 354 56.5
Glyma.11G126500 Glycine max HOM05D001043 ORTHO05D006432 2.9e-106 389.4 289 63.0
EL10Ac3g06009 Beta vulgaris HOM05D001043 ORTHO05D006432 1.1e-105 387.5 314 58.0
Aa31LG1G7110 Aethionema arabicum HOM05D001043 ORTHO05D006432 2.7e-104 382.9 329 58.4
Carub.0001s0544 Capsella rubella HOM05D001043 ORTHO05D006432 1.0e-103 380.9 314 59.6
A08p36110 Brassica napus HOM05D001043 ORTHO05D006432 3.9e-103 379.0 314 58.3
BraA08t35518Z Brassica rapa HOM05D001043 ORTHO05D006432 3.9e-103 379.0 314 58.3
ClCG05G007210 Citrullus lanatus HOM05D001043 ORTHO05D006432 8.6e-103 377.9 314 58.9
C08p02400 Brassica napus HOM05D001043 ORTHO05D006432 9.5e-102 374.4 316 57.6
BolC8t47032H Brassica oleracea HOM05D001043 ORTHO05D006432 9.5e-102 374.4 316 57.6
MELO3C006795.2 Cucumis melo HOM05D001043 ORTHO05D006432 2.4e-100 369.8 314 58.6
AUR62002348 Chenopodium quinoa HOM05D001043 ORTHO05D006432 5.2e-100 368.6 314 57.3
Migut.G01345 Erythranthe guttata HOM05D001043 ORTHO05D006432 1.3e-98 364.0 257 67.3
Hund12412 Selenicereus undatus HOM05D001043 ORTHO05D006432 6.4e-98 361.7 314 56.4
AUR62023842 Chenopodium quinoa HOM05D001043 ORTHO05D006432 2.7e-96 356.3 314 55.1
QL10p050755 Quercus lobata HOM05D001043 ORTHO05D006432 3.0e-95 352.8 231 71.0
Prupe.1G197800 Prunus persica HOM05D001043 ORTHO05D006432 1.1e-94 350.9 253 65.6
Os11g0265200 Oryza sativa ssp. japonica HOM05D001043 ORTHO05D006432 4.3e-94 349.0 317 56.8
CsaV3_3G015970 Cucumis sativus L. HOM05D001043 ORTHO05D006432 5.6e-94 348.6 271 60.9
SHI29125 Sapria himalayana HOM05D001043 ORTHO05D006432 1.6e-93 347.1 316 55.1
ATR0743G191 Amborella trichopoda HOM05D001043 ORTHO05D006432 6.9e-92 341.7 316 56.0
CDE07G0303 Ceratophyllum demersum HOM05D001043 ORTHO05D006432 1.2e-91 340.9 314 53.5
CiPaw.01G096300 Carya illinoinensis HOM05D001043 ORTHO05D006432 4.4e-91 339.0 292 58.6
Hma1.2p1_2415F.1_g321720 Hydrangea macrophylla HOM05D001043 ORTHO05D006432 3.8e-90 335.9 260 61.2
Psat7g209600 Pisum sativum HOM05D001043 ORTHO05D006432 1.1e-89 334.3 255 62.0
Ah.04g153480 Amaranthus hybridus HOM05D001043 ORTHO05D006432 6.0e-88 328.6 314 52.9
GSVIVG01010840001 Vitis vinifera HOM05D001043 ORTHO05D006432 1.3e-87 327.4 314 53.2
MBI11_g10483_MAGBIO Magnolia biondii HOM05D001043 ORTHO05D006432 1.7e-87 327.0 288 56.9
Phvul.011G053400 Phaseolus vulgaris HOM05D001043 ORTHO05D006432 2.5e-86 323.2 260 58.8
BcaC05g24309 Brassica carinata HOM05D001043 ORTHO05D006432 2.9e-82 309.7 315 52.4
C05p04390 Brassica napus HOM05D001043 ORTHO05D006432 2.9e-82 309.7 315 52.4
BolC5t29212H Brassica oleracea HOM05D001043 ORTHO05D006432 2.9e-82 309.7 315 52.4
A10p04730 Brassica napus HOM05D001043 ORTHO05D006432 1.1e-81 307.8 330 50.9
COL.COLO4_10086 Corchorus olitorius HOM05D001043 ORTHO05D006432 7.1e-81 305.1 203 68.0
BraA10t42737Z Brassica rapa HOM05D001043 ORTHO05D006432 2.1e-80 303.5 316 52.2
HPP92_004532 Vanilla planifolia HOM05D001043 ORTHO05D006432 7.9e-80 301.6 332 49.7
GSVIVG01010839001 Vitis vinifera HOM05D001043 ORTHO05D006432 2.1e-77 293.5 314 50.6
HPP92_004523 Vanilla planifolia HOM05D001043 ORTHO05D006432 4.0e-76 289.3 327 48.6
FAN07G1629 Fragaria x ananassa HOM05D001043 ORTHO05D006432 3.4e-75 286.2 324 48.8
CiPaw.02G052200 Carya illinoinensis HOM05D001043 ORTHO05D006432 1.3e-74 284.3 184 71.7
Ciclev10023406m.g Citrus clementina HOM05D001043 ORTHO05D006432 8.4e-74 281.6 314 47.8
Actinidia26504 Actinidia chinensis HOM05D001043 ORTHO05D006432 1.1e-73 281.2 287 52.6
Pp3c5_14310 Physcomitrium patens HOM05D001043 ORTHO05D006432 1.6e-72 277.3 315 46.3
BcaB02g06824 Brassica carinata HOM05D001043 ORTHO05D006432 2.1e-69 266.9 317 46.4
SMO203G0209 Selaginella moellendorffii HOM05D001043 ORTHO05D006432 4.6e-64 249.2 314 43.0
Mapoly0014s0053 Marchantia polymorpha HOM05D001043 ORTHO05D006432 7.7e-59 231.9 298 44.0
DCAR_028429 Daucus carota HOM05D001043 ORTHO05D006432 6.5e-58 228.8 180 62.2
Lj3A33G10 Lonicera japonica HOM05D001043 ORTHO05D006432 1.4e-55 221.1 146 69.2
Os11g0264700 Oryza sativa ssp. japonica HOM05D001043 ORTHO05D006432 5.7e-54 215.7 317 41.3
Zm00001eb168760 Zea mays HOM05D001043 ORTHO05D006432 7.4e-54 215.3 314 40.1
Hma1.2p1_1466F.1_g285390 Hydrangea macrophylla HOM05D001043 ORTHO05D006432 9.1e-52 208.4 189 53.4
CDE04G0865 Ceratophyllum demersum HOM05D001043 ORTHO05D006432 1.5e-51 207.6 181 54.1
HanXRQChr09g0262091 Helianthus annuus HOM05D001043 ORTHO05D006432 1.0e-50 204.9 180 56.1
Rhsim02G0082000 Rhododendron simsii HOM05D000432 ORTHO05D000320 1.6e-48 197.6 188 53.2
CBR_g726 Chara braunii HOM05D001043 ORTHO05D006432 3.8e-42 176.4 396 32.3
Lj3A33G11 Lonicera japonica HOM05D001043 ORTHO05D006432 5.9e-35 152.5 123 57.7
Cre01.g005900 Chlamydomonas reinhardtii HOM05D001043 ORTHO05D006432 6.5e-34 149.1 299 35.8
SEGI_03011 Sequoiadendron giganteum HOM05D001043 ORTHO05D006432 8.5e-34 148.7 137 51.8
HanXRQChr09g0262081 Helianthus annuus HOM05D001043 ORTHO05D006432 1.9e-33 147.5 102 63.7
HanXRQChr09g0250561 Helianthus annuus HOM05D001043 ORTHO05D006432 7.0e-28 129.0 93 64.5
DCAR_028430 Daucus carota HOM05D001043 ORTHO05D006432 1.1e-25 121.7 89 61.8
PRCOL_00003688 Prasinoderma coloniale HOM05D001043 ORTHO05D006432 2.5e-25 120.6 360 30.8
PGR142G2310 Punica granatum HOM05D001043 ORTHO05D006432 2.3e-23 114.0 72 68.1
HanXRQChr12g0370191 Helianthus annuus HOM05D001043 ORTHO05D006432 2.8e-13 80.5 71 53.5
MCO09G831 Micromonas commoda HOM05D001043 ORTHO05D006432 1.2e-11 75.1 332 26.2
MCO05G167 Micromonas commoda HOM05D006234 ORTHO05D007813 9.5e-09 65.5 117 33.3
Glyma.05G038600 Glycine max HOM05D006234 ORTHO05D007813 1.0e-07 62.0 139 30.9
Phvul.003G201500 Phaseolus vulgaris HOM05D006234 ORTHO05D007813 1.0e-07 62.0 139 30.9
Glyma.17G088400 Glycine max HOM05D006234 ORTHO05D007813 5.2e-07 59.7 139 30.2


User provided reference genes

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