Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow3G2364 Salvia bowleyana HOM05D004418 ORTHO05D005222 2.5e-136 488.8 255 100.0
SalBow3G3548 Salvia bowleyana HOM05D004418 ORTHO05D005222 8.7e-121 437.2 232 98.3
Nitab4.5_0000628g0180 Nicotiana tabacum HOM05D004418 ORTHO05D005222 4.3e-35 152.5 281 42.3
MSTRG.23562 Avicennia marina HOM05D004418 ORTHO05D005222 4.8e-34 149.1 266 45.1
Actinidia15868 Actinidia chinensis HOM05D004418 ORTHO05D005222 1.1e-33 147.9 204 49.5
Sopen02g030440 Solanum pennellii HOM05D004418 ORTHO05D005222 1.1e-33 147.9 289 41.2
SGA_v2.0_scaffold33G13429 Striga asiatica HOM05D004418 ORTHO05D005222 3.1e-33 146.4 276 41.3
Oeu052993.1 Olea europaea HOM05D004418 ORTHO05D005222 4.0e-33 146.0 195 48.7
Cc07_g09010 Coffea canephora HOM05D004418 ORTHO05D005222 6.9e-33 145.2 265 43.8
Actinidia36309 Actinidia chinensis HOM05D004418 ORTHO05D005222 1.2e-32 144.4 283 42.0
Dinv34848 Davidia involucrata HOM05D004418 ORTHO05D005222 2.0e-32 143.7 270 44.8
Nn3g17760 Nelumbo nucifera HOM05D004418 ORTHO05D005222 2.0e-32 143.7 266 44.4
Glyma.18G281000 Glycine max HOM05D004418 ORTHO05D005222 5.8e-32 142.1 281 38.8
Eucgr.F02480 Eucalyptus grandis HOM05D004418 ORTHO05D005222 9.9e-32 141.4 245 44.1
Solyc02g085750.4 Solanum lycopersicum HOM05D004418 ORTHO05D005222 9.9e-32 141.4 281 41.3
Potri.017G112600 Populus trichocarpa HOM05D004418 ORTHO05D005222 1.3e-31 141.0 284 40.1
FAN05G3990 Fragaria x ananassa HOM05D004418 ORTHO05D005222 2.9e-31 139.8 192 47.9
Haze_14129 Corylus avellana HOM05D004418 ORTHO05D005222 3.8e-31 139.4 190 48.4
Thecc.04G137500 Theobroma cacao HOM05D004418 ORTHO05D005222 3.8e-31 139.4 280 40.0
FAN14G2637 Fragaria x ananassa HOM05D004418 ORTHO05D005222 4.9e-31 139.0 192 47.9
Manes.01G108300 Manihot esculenta HOM05D004418 ORTHO05D005222 4.9e-31 139.0 219 45.7
COL.COLO4_16191 Corchorus olitorius HOM05D004418 ORTHO05D005222 6.4e-31 138.7 220 44.1
Nn4g23746 Nelumbo nucifera HOM05D004418 ORTHO05D005222 6.4e-31 138.7 224 44.6
Sabra04G0078200 Salix brachista HOM05D004418 ORTHO05D005222 6.4e-31 138.7 291 40.9
Oeu030758.1 Olea europaea HOM05D004418 ORTHO05D005222 1.1e-30 137.9 204 46.6
CAN.G358.137 Capsicum annuum HOM05D004418 ORTHO05D005222 1.9e-30 137.1 225 43.1
FvH4_6g45350 Fragaria vesca HOM05D004418 ORTHO05D005222 1.9e-30 137.1 192 47.4
FAN02G0751 Fragaria x ananassa HOM05D004418 ORTHO05D005222 1.9e-30 137.1 192 47.9
MD17G1074300 Malus domestica HOM05D004418 ORTHO05D005222 1.9e-30 137.1 276 40.2
Cfa007945 Carpinus fangiana HOM05D004418 ORTHO05D005222 2.4e-30 136.7 289 40.1
CiPaw.03G059700 Carya illinoinensis HOM05D004418 ORTHO05D005222 2.4e-30 136.7 229 46.3
RcHm_v2.0_Chr2g0163131 Rosa chinensis HOM05D004418 ORTHO05D005222 2.4e-30 136.7 193 47.2
Prupe.3G239700 Prunus persica HOM05D004418 ORTHO05D005222 3.2e-30 136.3 272 40.8
arahy.Tifrunner.gnm1.ann1.FZV4HQ Arachis hypogaea HOM05D004418 ORTHO05D005222 4.2e-30 136.0 266 39.8
arahy.Tifrunner.gnm1.ann1.I4UW8B Arachis hypogaea HOM05D004418 ORTHO05D005222 4.2e-30 136.0 266 39.8
CiPaw.04G040400 Carya illinoinensis HOM05D004418 ORTHO05D005222 9.3e-30 134.8 224 46.4
Solyc02g063030.4 Solanum lycopersicum HOM05D004418 ORTHO05D005222 1.6e-29 134.0 297 37.4
Sopen02g014090 Solanum pennellii HOM05D004418 ORTHO05D005222 1.6e-29 134.0 296 37.5
Lj4A194T37 Lonicera japonica HOM05D004418 ORTHO05D005222 2.1e-29 133.7 205 44.4
Nitab4.5_0004118g0100 Nicotiana tabacum HOM05D004418 ORTHO05D005222 2.7e-29 133.3 295 39.3
PGSC0003DMG400024185 Solanum tuberosum HOM05D004418 ORTHO05D005222 2.7e-29 133.3 300 37.3
TAR462G0001 Trochodendron aralioides HOM05D004418 ORTHO05D005222 2.7e-29 133.3 266 41.7
Glyma.08G256900 Glycine max HOM05D004418 ORTHO05D005222 4.6e-29 132.5 282 36.5
VMungo0464G1669 Vigna mungo HOM05D004418 ORTHO05D005222 4.6e-29 132.5 266 40.6
Dinv33929 Davidia involucrata HOM05D004418 ORTHO05D005222 1.0e-28 131.3 245 45.3
Migut.H00200 Erythranthe guttata HOM05D004418 ORTHO05D005222 1.0e-28 131.3 300 37.0
Migut.L00303 Erythranthe guttata HOM05D004418 ORTHO05D005222 1.0e-28 131.3 270 41.9
Gohir.D07G075900 Gossypium hirsutum HOM05D004418 ORTHO05D005222 1.3e-28 131.0 224 43.8
Gorai.001G080100 Gossypium raimondii HOM05D004418 ORTHO05D005222 1.3e-28 131.0 224 43.8
Lj1g0022779 Lotus japonicus HOM05D004418 ORTHO05D005222 1.3e-28 131.0 247 39.3
MSTRG.3576 Avicennia marina HOM05D004418 ORTHO05D005222 1.7e-28 130.6 273 40.3
Lj2C447G3 Lonicera japonica HOM05D006042 ORTHO05D007658 1.7e-28 130.6 216 43.1
Nitab4.5_0008781g0030 Nicotiana tabacum HOM05D004418 ORTHO05D005222 1.7e-28 130.6 290 37.2
TPR.G4552 Trifolium pratense HOM05D004418 ORTHO05D005222 1.7e-28 130.6 270 40.0
Lalb_Chr10g0092251 Lupinus albus HOM05D004418 ORTHO05D005222 2.3e-28 130.2 260 40.0
CSS0011812 Camellia sinensis var. sinensis HOM05D004418 ORTHO05D005222 3.0e-28 129.8 222 45.5
Glyma.13G046900 Glycine max HOM05D004418 ORTHO05D005222 3.0e-28 129.8 273 39.6
Gohir.A07G071400 Gossypium hirsutum HOM05D004418 ORTHO05D005222 3.0e-28 129.8 238 42.9
Sed0007454 Sechium edule HOM05D004418 ORTHO05D005222 3.0e-28 129.8 281 38.8
VMungo1383G2014 Vigna mungo HOM05D004418 ORTHO05D005222 3.0e-28 129.8 247 39.3
Medtr7g018370 Medicago truncatula HOM05D004418 ORTHO05D005222 3.9e-28 129.4 238 42.0
HanXRQChr12g0376561 Helianthus annuus HOM05D004418 ORTHO05D005222 5.1e-28 129.0 265 40.0
Psat3g190400 Pisum sativum HOM05D004418 ORTHO05D005222 5.1e-28 129.0 274 38.7
GSVIVG01036443001 Vitis vinifera HOM05D004418 ORTHO05D005222 5.1e-28 129.0 282 39.7
Cpa.g.sc179.25 Carica papaya HOM05D004418 ORTHO05D005222 6.6e-28 128.6 271 38.4
QL02p052558 Quercus lobata HOM05D004418 ORTHO05D005222 8.7e-28 128.3 286 39.9
Potri.004G102200 Populus trichocarpa HOM05D004418 ORTHO05D005222 1.5e-27 127.5 292 38.7
Sabra17G0093300 Salix brachista HOM05D004418 ORTHO05D005222 1.9e-27 127.1 244 41.0
Medtr6g017240 Medicago truncatula HOM05D004418 ORTHO05D005222 2.5e-27 126.7 286 37.8
Ciclev10012140m.g Citrus clementina HOM05D004418 ORTHO05D005222 3.3e-27 126.3 236 41.5
Phvul.004G062900 Phaseolus vulgaris HOM05D004418 ORTHO05D005222 3.3e-27 126.3 289 38.4
Glyma.19G045400 Glycine max HOM05D004418 ORTHO05D005222 4.3e-27 125.9 279 37.3
Atru.chr8.826 Acer truncatum HOM05D004418 ORTHO05D005222 5.6e-27 125.6 205 46.3
ClCG05G012070 Citrullus lanatus HOM05D004418 ORTHO05D005222 7.3e-27 125.2 247 40.9
Duzib133G1448 Durio zibethinus HOM05D004418 ORTHO05D005222 7.3e-27 125.2 219 40.2
Gohir.A11G162400 Gossypium hirsutum HOM05D004418 ORTHO05D005222 7.3e-27 125.2 250 39.2
Gohir.D11G168666 Gossypium hirsutum HOM05D004418 ORTHO05D005222 9.6e-27 124.8 250 37.6
Hma1.2p1_0550F.1_g177250 Hydrangea macrophylla HOM05D004418 ORTHO05D005222 1.3e-26 124.4 222 42.8
CSS0000095 Camellia sinensis var. sinensis HOM05D004418 ORTHO05D005222 1.6e-26 124.0 189 45.0
Peaxi162Scf00501g00012 Petunia axillaris HOM05D004418 ORTHO05D005222 1.6e-26 124.0 174 47.1
Lalb_Chr06g0174671 Lupinus albus HOM05D004418 ORTHO05D005222 2.1e-26 123.6 277 35.0
CAN.G23.16 Capsicum annuum HOM05D004418 ORTHO05D005222 2.8e-26 123.2 213 42.3
ClCG11G005360 Citrullus lanatus HOM05D004418 ORTHO05D005222 2.8e-26 123.2 276 37.7
MELO3C023762.2 Cucumis melo HOM05D004418 ORTHO05D005222 2.8e-26 123.2 258 38.0
CsaV3_3G020330 Cucumis sativus L. HOM05D004418 ORTHO05D005222 2.8e-26 123.2 258 38.0
CANSAT64G2567 Cannabis sativa HOM05D004418 ORTHO05D005222 3.6e-26 122.9 203 43.8
PGR042G3608 Punica granatum HOM05D004418 ORTHO05D005222 6.2e-26 122.1 271 39.5
CSS0030087 Camellia sinensis var. sinensis HOM05D004418 ORTHO05D005222 8.1e-26 121.7 297 36.0
Phvul.008G020100 Phaseolus vulgaris HOM05D004418 ORTHO05D005222 8.1e-26 121.7 264 36.7
Sed0007873 Sechium edule HOM05D004418 ORTHO05D005222 8.1e-26 121.7 256 38.3
MD09G1084800 Malus domestica HOM05D004418 ORTHO05D005222 1.4e-25 120.9 285 38.6
TPR.G32452 Trifolium pratense HOM05D004418 ORTHO05D005222 1.4e-25 120.9 279 36.9
CsaV3_5G039140 Cucumis sativus L. HOM05D004418 ORTHO05D005222 2.4e-25 120.2 287 38.7
DCAR_017217 Daucus carota HOM05D004418 ORTHO05D005222 2.4e-25 120.2 276 38.0
Gorai.007G180200 Gossypium raimondii HOM05D004418 ORTHO05D005222 2.4e-25 120.2 250 38.8
ECA246G2173 Erigeron canadensis HOM05D004418 ORTHO05D005222 3.1e-25 119.8 273 38.8
Aqoxy3G00366 Aquilegia oxysepala HOM05D004418 ORTHO05D005222 4.0e-25 119.4 267 38.2
Lj2g0026691 Lotus japonicus HOM05D004418 ORTHO05D005222 6.9e-25 118.6 266 37.6
MELO3C022089.2 Cucumis melo HOM05D004418 ORTHO05D005222 9.0e-25 118.2 133 54.1
Psat1g012960 Pisum sativum HOM05D004418 ORTHO05D005222 1.2e-24 117.9 130 53.1
TWI75G1693 Tripterygium wilfordii HOM05D004418 ORTHO05D005222 1.2e-24 117.9 254 40.9
THA.LOC104803001 Tarenaya hassleriana HOM05D004418 ORTHO05D005222 2.0e-24 117.1 229 40.6
TAR278G0004 Trochodendron aralioides HOM05D004418 ORTHO05D005222 4.5e-24 115.9 259 38.6
Nitab4.5_0007207g0030 Nicotiana tabacum HOM05D004418 ORTHO05D005222 7.6e-24 115.2 230 38.7
Ah.10g037550 Amaranthus hybridus HOM05D004418 ORTHO05D005222 1.3e-23 114.4 286 36.7
PSO478G2162 Papaver somniferum HOM05D004418 ORTHO05D005222 1.7e-23 114.0 170 41.2
EL10Ac2g04606 Beta vulgaris HOM05D004418 ORTHO05D005222 2.2e-23 113.6 254 37.8
SalBow5G1629 Salvia bowleyana HOM05D004418 ORTHO05D005222 2.2e-23 113.6 255 38.8
PSO017G3409 Papaver somniferum HOM05D004418 ORTHO05D005222 4.9e-23 112.5 245 36.7
Thhalv10014096m.g Eutrema salsugineum HOM05D004418 ORTHO05D005222 8.4e-23 111.7 237 39.7
Aa31LG11G13580 Aethionema arabicum HOM05D004418 ORTHO05D005222 1.1e-22 111.3 229 39.3
AT5G16030 Arabidopsis thaliana HOM05D004418 ORTHO05D005222 2.4e-22 110.2 240 38.8
MBI09_g05206_MAGBIO Magnolia biondii HOM05D004418 ORTHO05D005222 3.2e-22 109.8 253 39.1
Aqoxy3G03921 Aquilegia oxysepala HOM05D004418 ORTHO05D005222 4.2e-22 109.4 117 56.4
CARHR197280 Cardamine hirsuta HOM05D004418 ORTHO05D005222 4.2e-22 109.4 239 37.7
Hund13733 Selenicereus undatus HOM05D004418 ORTHO05D005222 4.2e-22 109.4 127 51.2
C03p08770 Brassica napus HOM05D004418 ORTHO05D005222 5.4e-22 109.0 228 39.0
Sp6g28100 Schrenkiella parvula HOM05D004418 ORTHO05D005222 9.3e-22 108.2 230 38.3
BcaB01g05008 Brassica carinata HOM05D004418 ORTHO05D005222 1.2e-21 107.8 196 41.8
AL6G26910 Arabidopsis lyrata HOM05D004418 ORTHO05D005222 1.6e-21 107.5 255 37.3
BcaB08g36881 Brassica carinata HOM05D004418 ORTHO05D005222 1.6e-21 107.5 238 37.4
BcaNung02220 Brassica carinata HOM05D004418 ORTHO05D005222 2.1e-21 107.1 119 54.6
CARHR076500 Cardamine hirsuta HOM05D004418 ORTHO05D005222 2.1e-21 107.1 223 39.0
Aa31LG5G13000 Aethionema arabicum HOM05D004418 ORTHO05D005222 2.7e-21 106.7 229 38.0
BolC3t13373H Brassica oleracea HOM05D004418 ORTHO05D005222 2.7e-21 106.7 235 37.9
BraA03t10082Z Brassica rapa HOM05D004418 ORTHO05D005222 2.7e-21 106.7 238 37.8
Peaxi162Scf01327g00136 Petunia axillaris HOM05D004418 ORTHO05D005222 2.7e-21 106.7 229 38.9
A03p07540 Brassica napus HOM05D004418 ORTHO05D005222 3.5e-21 106.3 228 38.6
A10p23020 Brassica napus HOM05D004418 ORTHO05D005222 3.5e-21 106.3 249 36.5
BraA10t44371Z Brassica rapa HOM05D004418 ORTHO05D005222 3.5e-21 106.3 249 36.5
Carub.0006s1422 Capsella rubella HOM05D004418 ORTHO05D005222 4.6e-21 105.9 240 37.1
C09p60990 Brassica napus HOM05D004418 ORTHO05D005222 6.0e-21 105.5 240 37.1
BolC9t58946H Brassica oleracea HOM05D004418 ORTHO05D005222 6.0e-21 105.5 240 37.1
AT3G02500 Arabidopsis thaliana HOM05D004418 ORTHO05D005222 1.0e-20 104.8 229 38.4
AL3G11860 Arabidopsis lyrata HOM05D004418 ORTHO05D005222 1.3e-20 104.4 236 39.0
A02p03360 Brassica napus HOM05D004418 ORTHO05D005222 1.3e-20 104.4 119 53.8
Carub.0003s0161 Capsella rubella HOM05D004418 ORTHO05D005222 2.3e-20 103.6 252 34.9
BolC2t06735H Brassica oleracea HOM05D004418 ORTHO05D005222 8.7e-20 101.7 126 52.4
PGR004G1179 Punica granatum HOM05D004418 ORTHO05D005222 8.7e-20 101.7 234 38.0
BcaC03g18465 Brassica carinata HOM05D004418 ORTHO05D005222 1.1e-19 101.3 237 38.0
C02p08130 Brassica napus HOM05D004418 ORTHO05D005222 1.1e-19 101.3 237 38.0
BcaC04g18914 Brassica carinata HOM05D004418 ORTHO05D005222 1.9e-19 100.5 235 37.0
BraA02t05307Z Brassica rapa HOM05D004418 ORTHO05D005222 3.3e-19 99.8 120 53.3
Lsat_1_v5_gn_3_80201 Lactuca sativa HOM05D004418 ORTHO05D005222 3.3e-19 99.8 156 47.4
BcaC01g04442 Brassica carinata HOM05D004418 ORTHO05D005222 4.8e-18 95.9 205 38.0
SGA_v2.0_scaffold49G18089 Striga asiatica HOM05D004418 ORTHO05D005222 2.0e-16 90.5 213 37.6
TWI79G1555 Tripterygium wilfordii HOM05D004418 ORTHO05D005222 2.6e-16 90.1 315 32.4
ATR0686G091 Amborella trichopoda HOM05D004418 ORTHO05D005222 7.6e-16 88.6 161 39.8
Oeu052991.1 Olea europaea HOM05D004418 ORTHO05D005222 6.5e-15 85.5 89 55.1
BcaC01g04556 Brassica carinata HOM05D004418 ORTHO05D005222 5.5e-14 82.4 220 33.2
vmacro05572 Vaccinium macrocarpon HOM05D004418 ORTHO05D005222 7.1e-14 82.0 222 35.6
BraA03t12466Z Brassica rapa HOM05D004418 ORTHO05D005222 4.6e-13 79.3 236 35.2
A03p32980 Brassica napus HOM05D004418 ORTHO05D005222 1.0e-12 78.2 245 34.7
arahy.Tifrunner.gnm1.ann1.SB4BUV Arachis hypogaea HOM05D004418 ORTHO05D005222 1.8e-12 77.4 190 37.4
RcHm_v2.0_Chr4g0404491 Rosa chinensis HOM05D004418 ORTHO05D005222 6.7e-12 75.5 82 57.3
Ah.16g101950 Amaranthus hybridus HOM05D004418 ORTHO05D005222 1.9e-11 73.9 144 33.3
BolC3t16277H Brassica oleracea HOM05D004418 ORTHO05D005222 2.5e-11 73.6 244 31.1
C03p40110 Brassica napus HOM05D004418 ORTHO05D005222 3.3e-11 73.2 244 31.1
CAN.G144.13 Capsicum annuum HOM05D004418 ORTHO05D005222 2.6e-08 63.5 63 61.9
arahy.Tifrunner.gnm1.ann1.554YPX Arachis hypogaea HOM05D004418 ORTHO05D005222 5.8e-08 62.4 241 31.5
Sc11g0008220 Simmondsia chinensis HOM05D004418 ORTHO05D005222 1.0e-07 61.6 171 31.0


User provided reference genes

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