Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow3G2207 Salvia bowleyana HOM05D004934 ORTHO05D005924 4.5e-47 191.0 106 100.0
SGA_v2.0_scaffold295G47520 Striga asiatica HOM05D004934 ORTHO05D005924 5.8e-26 120.9 112 63.4
MSTRG.12371 Avicennia marina HOM05D004934 ORTHO05D005924 1.4e-24 116.3 120 58.3
MSTRG.17705 Avicennia marina HOM05D004934 ORTHO05D005924 7.0e-24 114.0 125 56.0
Gohir.A08G005600 Gossypium hirsutum HOM05D004934 ORTHO05D005924 7.0e-24 114.0 122 56.6
PGR102G3359 Punica granatum HOM05D004934 ORTHO05D005924 1.6e-23 112.8 123 56.1
Nn2g14177 Nelumbo nucifera HOM05D004934 ORTHO05D005924 2.7e-23 112.1 122 57.4
Gohir.D08G015900 Gossypium hirsutum HOM05D004934 ORTHO05D005924 4.6e-23 111.3 122 55.7
Dinv42546 Davidia involucrata HOM05D004934 ORTHO05D005924 7.8e-23 110.5 122 54.9
Gorai.004G010200 Gossypium raimondii HOM05D004934 ORTHO05D005924 7.8e-23 110.5 122 54.9
Thecc.09G281300 Theobroma cacao HOM05D004934 ORTHO05D005924 1.0e-22 110.2 122 54.9
Prupe.6G131900 Prunus persica HOM05D004934 ORTHO05D005924 1.3e-22 109.8 122 52.5
Cc01_g09040 Coffea canephora HOM05D004934 ORTHO05D005924 2.3e-22 109.0 124 56.5
Dinv22836 Davidia involucrata HOM05D004934 ORTHO05D005924 2.3e-22 109.0 122 56.6
Cfa010007 Carpinus fangiana HOM05D004934 ORTHO05D005924 3.9e-22 108.2 122 53.3
CiPaw.14G099500 Carya illinoinensis HOM05D004934 ORTHO05D005924 6.6e-22 107.5 123 57.7
Migut.N02487 Erythranthe guttata HOM05D004934 ORTHO05D005924 6.6e-22 107.5 122 54.9
Duzib168G1921 Durio zibethinus HOM05D004934 ORTHO05D005924 1.1e-21 106.7 122 54.1
FAN13G2036 Fragaria x ananassa HOM05D004934 ORTHO05D005924 1.5e-21 106.3 122 52.5
ATR0609G030 Amborella trichopoda HOM05D004934 ORTHO05D005924 1.9e-21 105.9 122 55.7
FvH4_5g26820 Fragaria vesca HOM05D004934 ORTHO05D005924 1.9e-21 105.9 122 52.5
FAN04G2654 Fragaria x ananassa HOM05D004934 ORTHO05D005924 1.9e-21 105.9 122 52.5
MD11G1166100 Malus domestica HOM05D004934 ORTHO05D005924 1.9e-21 105.9 118 53.4
TAR633G0561 Trochodendron aralioides HOM05D004934 ORTHO05D005924 2.5e-21 105.5 123 56.1
RcHm_v2.0_Chr5g0045641 Rosa chinensis HOM05D004934 ORTHO05D005924 3.3e-21 105.1 122 52.5
FAN11G2484 Fragaria x ananassa HOM05D004934 ORTHO05D005924 9.5e-21 103.6 109 54.1
Actinidia35468 Actinidia chinensis HOM05D004934 ORTHO05D005924 1.2e-20 103.2 124 53.2
FvH4_3g25100 Fragaria vesca HOM05D004934 ORTHO05D005924 1.6e-20 102.8 109 54.1
Oeu031471.1 Olea europaea HOM05D004934 ORTHO05D005924 1.6e-20 102.8 125 50.4
Nitab4.5_0000755g0070 Nicotiana tabacum HOM05D004934 ORTHO05D005924 2.8e-20 102.1 125 52.8
Sed0020870 Sechium edule HOM05D004934 ORTHO05D005924 2.8e-20 102.1 118 54.2
Sc06g0008770 Simmondsia chinensis HOM05D004934 ORTHO05D005924 2.8e-20 102.1 123 53.7
Hund18761 Selenicereus undatus HOM05D004934 ORTHO05D005924 6.2e-20 100.9 123 53.7
Eucgr.B03844 Eucalyptus grandis HOM05D004934 ORTHO05D005924 1.1e-19 100.1 120 52.5
Solyc11g068510.2 Solanum lycopersicum HOM05D004934 ORTHO05D005924 1.1e-19 100.1 122 54.1
Sopen11g027220 Solanum pennellii HOM05D004934 ORTHO05D005924 1.1e-19 100.1 122 54.1
Manes.04G003100 Manihot esculenta HOM05D004934 ORTHO05D005924 1.4e-19 99.8 123 52.8
CAN.G1524.5 Capsicum annuum HOM05D004934 ORTHO05D005924 1.8e-19 99.4 125 51.2
Aqoxy4G02760 Aquilegia oxysepala HOM05D004934 ORTHO05D005924 3.1e-19 98.6 123 50.4
PGSC0003DMG400026356 Solanum tuberosum HOM05D004934 ORTHO05D005924 3.1e-19 98.6 122 53.3
Ciclev10029605m.g Citrus clementina HOM05D004934 ORTHO05D005924 4.0e-19 98.2 121 49.6
CsaV3_1G014900 Cucumis sativus L. HOM05D004934 ORTHO05D005924 4.0e-19 98.2 118 55.1
Hma1.2p1_0587F.1_g184270 Hydrangea macrophylla HOM05D004934 ORTHO05D005924 5.2e-19 97.8 123 51.2
Nitab4.5_0012586g0010 Nicotiana tabacum HOM05D004934 ORTHO05D005924 5.2e-19 97.8 125 50.4
Peaxi162Scf00040g00023 Petunia axillaris HOM05D004934 ORTHO05D005924 8.9e-19 97.1 123 52.0
Nitab4.5_0000227g0280 Nicotiana tabacum HOM05D004934 ORTHO05D005924 1.5e-18 96.3 123 49.6
RcHm_v2.0_Chr5g0046361 Rosa chinensis HOM05D004934 ORTHO05D005924 1.5e-18 96.3 130 47.7
QL01p012137 Quercus lobata HOM05D004934 ORTHO05D005924 2.0e-18 95.9 118 52.5
TWI31G0143 Tripterygium wilfordii HOM05D004934 ORTHO05D005924 2.0e-18 95.9 122 48.4
ClCG01G011970 Citrullus lanatus HOM05D004934 ORTHO05D005924 2.6e-18 95.5 115 51.3
Lalb_Chr03g0028151 Lupinus albus HOM05D004934 ORTHO05D005924 2.6e-18 95.5 125 50.4
TPR.G17236 Trifolium pratense HOM05D004934 ORTHO05D005924 3.4e-18 95.1 125 52.0
Gohir.A09G096200 Gossypium hirsutum HOM05D004934 ORTHO05D005924 4.4e-18 94.7 116 52.6
Glyma.11G182300 Glycine max HOM05D004934 ORTHO05D005924 5.8e-18 94.4 121 52.9
GSVIVG01036114001 Vitis vinifera HOM05D004934 ORTHO05D005924 7.5e-18 94.0 120 49.2
Gohir.D09G095900 Gossypium hirsutum HOM05D004934 ORTHO05D005924 9.8e-18 93.6 116 51.7
Nitab4.5_0002914g0100 Nicotiana tabacum HOM05D004934 ORTHO05D005924 1.3e-17 93.2 124 49.2
VMungo1127G1656 Vigna mungo HOM05D004934 ORTHO05D005924 1.3e-17 93.2 121 52.1
unitig_27.g25034 Utricularia gibba HOM05D004934 ORTHO05D005924 1.7e-17 92.8 115 48.7
AUR62036196 Chenopodium quinoa HOM05D004934 ORTHO05D005924 2.9e-17 92.0 124 49.2
Glyma.12G090500 Glycine max HOM05D004934 ORTHO05D005924 3.7e-17 91.7 121 52.1
Medtr4g052910 Medicago truncatula HOM05D004934 ORTHO05D005924 3.7e-17 91.7 125 48.8
THA.LOC104800543 Tarenaya hassleriana HOM05D004934 ORTHO05D005924 3.7e-17 91.7 120 46.7
arahy.Tifrunner.gnm1.ann1.Q13MWU Arachis hypogaea HOM05D004934 ORTHO05D005924 8.3e-17 90.5 124 50.0
arahy.Tifrunner.gnm1.ann1.Q2H7V9 Arachis hypogaea HOM05D004934 ORTHO05D005924 8.3e-17 90.5 124 50.0
EL10Ac7g15830 Beta vulgaris HOM05D004934 ORTHO05D005924 8.3e-17 90.5 124 47.6
AUR62009749 Chenopodium quinoa HOM05D004934 ORTHO05D005924 8.3e-17 90.5 124 48.4
Duzib170G0221 Durio zibethinus HOM05D004934 ORTHO05D005924 8.3e-17 90.5 119 49.6
CANSAT54G1198 Cannabis sativa HOM05D004934 ORTHO05D005924 1.1e-16 90.1 128 46.1
Ca_19413_v3 Cicer arietinum L. HOM05D004934 ORTHO05D005924 1.4e-16 89.7 123 49.6
MD03G1147400 Malus domestica HOM05D004934 ORTHO05D005924 1.4e-16 89.7 115 52.2
vmacro14353 Vaccinium macrocarpon HOM05D004934 ORTHO05D005924 1.9e-16 89.4 123 48.0
Lsat_1_v5_gn_6_38900 Lactuca sativa HOM05D004934 ORTHO05D005924 7.1e-16 87.4 123 47.2
Atru.chr3.3218 Acer truncatum HOM05D004934 ORTHO05D005924 9.2e-16 87.0 119 52.1
CSS0038235 Camellia sinensis var. sinensis HOM05D004934 ORTHO05D005924 1.2e-15 86.7 108 51.9
Phvul.011G095100 Phaseolus vulgaris HOM05D004934 ORTHO05D005924 1.2e-15 86.7 121 48.8
Aqoxy2G01124 Aquilegia oxysepala HOM05D004934 ORTHO05D005924 1.6e-15 86.3 121 48.8
CARHR120400 Cardamine hirsuta HOM05D004934 ORTHO05D005924 2.1e-15 85.9 120 45.8
Sp4g10520 Schrenkiella parvula HOM05D004934 ORTHO05D005924 3.5e-15 85.1 121 45.5
A07p18350 Brassica napus HOM05D004934 ORTHO05D005924 6.0e-15 84.3 119 47.1
Lalb_Chr01g0004881 Lupinus albus HOM05D004934 ORTHO05D005924 6.0e-15 84.3 125 48.8
Potri.009G163100 Populus trichocarpa HOM05D004934 ORTHO05D005924 1.7e-14 82.8 118 49.2
AL4G22570 Arabidopsis lyrata HOM05D004934 ORTHO05D005924 3.0e-14 82.0 121 47.9
Oeu035567.1 Olea europaea HOM05D004934 ORTHO05D005924 3.9e-14 81.6 118 50.0
Sabra04G0136300 Salix brachista HOM05D004934 ORTHO05D005924 5.1e-14 81.3 126 50.0
Psat7g187720 Pisum sativum HOM05D004934 ORTHO05D005924 6.6e-14 80.9 121 50.4
Zm00001eb151060 Zea mays HOM05D004934 ORTHO05D005924 8.6e-14 80.5 121 45.5
BcaC02g08235 Brassica carinata HOM05D004934 ORTHO05D005924 1.1e-13 80.1 115 46.1
BcaC02g10898 Brassica carinata HOM05D004934 ORTHO05D005924 1.1e-13 80.1 119 49.6
C04p23930 Brassica napus HOM05D004934 ORTHO05D005924 1.1e-13 80.1 119 49.6
C04p56900 Brassica napus HOM05D004934 ORTHO05D005924 1.1e-13 80.1 115 46.1
BolC4t23886H Brassica oleracea HOM05D004934 ORTHO05D005924 1.1e-13 80.1 119 49.6
BolC4t27225H Brassica oleracea HOM05D004934 ORTHO05D005924 1.1e-13 80.1 115 46.1
Aa31LG5G8260 Aethionema arabicum HOM05D004934 ORTHO05D005924 1.5e-13 79.7 120 49.2
AT2G27730 Arabidopsis thaliana HOM05D004934 ORTHO05D005924 1.5e-13 79.7 121 46.3
Sabra09G0127300 Salix brachista HOM05D004934 ORTHO05D005924 1.5e-13 79.7 124 47.6
Lj3g0027260 Lotus japonicus HOM05D004934 ORTHO05D005924 1.9e-13 79.3 117 44.4
BcaB06g28164 Brassica carinata HOM05D004934 ORTHO05D005924 2.5e-13 79.0 117 44.4
SGA_v2.0_scaffold177G39414 Striga asiatica HOM05D004934 ORTHO05D005924 2.5e-13 79.0 124 46.0
BraA07t29551Z Brassica rapa HOM05D004934 ORTHO05D005924 3.3e-13 78.6 120 50.0
Carub.0004s0847 Capsella rubella HOM05D004934 ORTHO05D005924 3.3e-13 78.6 114 48.2
ECA233G4139 Erigeron canadensis HOM05D004934 ORTHO05D005924 4.3e-13 78.2 123 44.7
BcaB02g10110 Brassica carinata HOM05D004934 ORTHO05D005924 5.6e-13 77.8 119 47.1
Potri.004G201700 Populus trichocarpa HOM05D004934 ORTHO05D005924 7.3e-13 77.4 122 49.2
Rhsim13G0112500 Rhododendron simsii HOM05D004934 ORTHO05D005924 9.5e-13 77.0 153 39.2
Zm00001eb369670 Zea mays HOM05D004934 ORTHO05D005924 9.5e-13 77.0 128 45.3
A04p21090 Brassica napus HOM05D004934 ORTHO05D005924 1.2e-12 76.6 113 45.1
BraA04t17678Z Brassica rapa HOM05D004934 ORTHO05D005924 1.2e-12 76.6 113 45.1
TAR636G0935 Trochodendron aralioides HOM05D004934 ORTHO05D005924 1.6e-12 76.3 119 44.5
PSO801G0293 Papaver somniferum HOM05D004934 ORTHO05D005924 2.1e-12 75.9 116 46.6
HanXRQChr13g0397481 Helianthus annuus HOM05D004934 ORTHO05D005924 2.8e-12 75.5 120 44.2
PSO339G6001 Papaver somniferum HOM05D004934 ORTHO05D005924 2.8e-12 75.5 116 45.7
Thhalv10017451m.g Eutrema salsugineum HOM05D004934 ORTHO05D005924 4.7e-12 74.7 118 50.8
Peaxi162Scf00757g00422 Petunia axillaris HOM05D004934 ORTHO05D005924 8.1e-12 73.9 113 44.2
vmacro03322 Vaccinium macrocarpon HOM05D004934 ORTHO05D005924 5.2e-11 71.2 200 33.0
Lsat_1_v5_gn_2_59421 Lactuca sativa HOM05D004934 ORTHO05D005924 1.2e-10 70.1 112 42.9
ECA238G4733 Erigeron canadensis HOM05D004934 ORTHO05D005924 2.6e-10 68.9 120 47.5
CDE04G1608 Ceratophyllum demersum HOM05D004934 ORTHO05D005924 3.4e-10 68.6 129 38.0
CDE12G0371 Ceratophyllum demersum HOM05D004622 ORTHO05D005431 9.9e-10 67.0 119 39.5
HanXRQChr11g0324151 Helianthus annuus HOM05D004934 ORTHO05D005924 1.7e-09 66.2 123 45.5
DCAR_030570 Daucus carota HOM05D004934 ORTHO05D005924 3.8e-09 65.1 68 57.4
BcaC02g10901 Brassica carinata HOM05D004934 ORTHO05D005924 3.2e-08 62.0 105 45.7
DCAR_010342 Daucus carota HOM05D004934 ORTHO05D005924 3.2e-08 62.0 88 45.5
Hma1.2p1_0587F.1_g184260 Hydrangea macrophylla HOM05D004934 ORTHO05D005924 4.1e-08 61.6 78 52.6
Hma1.2p1_3516F.1_g336514 Hydrangea macrophylla HOM05D004934 ORTHO05D005924 4.1e-08 61.6 78 52.6
FAN25G2937 Fragaria x ananassa HOM05D004934 ORTHO05D005924 7.1e-08 60.8 86 43.0
Gorai.009G084700 Gossypium raimondii HOM05D004934 ORTHO05D005924 9.2e-08 60.5 82 43.9
Gohir.D05G082900 Gossypium hirsutum HOM05D004934 ORTHO05D005924 1.6e-07 59.7 82 43.9
HPP92_003219 Vanilla planifolia HOM05D004934 ORTHO05D005924 2.7e-07 58.9 81 44.4
PSO384G4162 Papaver somniferum HOM05D004934 ORTHO05D005924 7.8e-07 57.4 108 40.7
Gohir.A05G080000 Gossypium hirsutum HOM05D004934 ORTHO05D005924 1.0e-06 57.0 82 42.7
Cpa.g.sc32.36 Carica papaya HOM05D004934 ORTHO05D005924 1.3e-06 56.6 78 50.0
MELO3C004698.2 Cucumis melo HOM05D004934 ORTHO05D005924 1.3e-06 56.6 38 65.8
Hma1.2p1_0413F.1_g147325 Hydrangea macrophylla HOM05D004934 ORTHO05D005924 1.3e-06 56.6 79 46.8
Nn6g34871 Nelumbo nucifera HOM05D004934 ORTHO05D005924 1.3e-06 56.6 34 82.4
Cpa.g.sc32.38 Carica papaya HOM05D004934 ORTHO05D005924 1.7e-06 56.2 34 76.5
MBI05_g05303_MAGBIO Magnolia biondii HOM05D004934 ORTHO05D005924 3.0e-06 55.5 87 44.8
PSO339G2388 Papaver somniferum HOM05D004934 ORTHO05D005924 3.0e-06 55.5 106 37.7


User provided reference genes

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