Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow3G2197 Salvia bowleyana HOM05D003793 ORTHO05D004471 1.6e-100 369.4 186 100.0
Migut.J00551 Erythranthe guttata HOM05D003793 ORTHO05D004471 2.4e-51 206.1 118 83.1
SGA_v2.0_scaffold126G33927 Striga asiatica HOM05D003793 ORTHO05D004471 3.1e-51 205.7 174 64.4
Nitab4.5_0000411g0010 Nicotiana tabacum HOM05D003793 ORTHO05D004471 2.5e-48 196.1 148 69.6
Lj3A883G46 Lonicera japonica HOM05D003793 ORTHO05D004471 4.2e-48 195.3 130 73.1
Gohir.D13G162300 Gossypium hirsutum HOM05D003793 ORTHO05D004471 5.5e-48 194.9 122 76.2
TWI60G0578 Tripterygium wilfordii HOM05D003793 ORTHO05D004471 5.5e-48 194.9 159 63.5
Gorai.013G184400 Gossypium raimondii HOM05D003793 ORTHO05D004471 9.4e-48 194.1 122 76.2
Nn1g09155 Nelumbo nucifera HOM05D003793 ORTHO05D004471 1.2e-47 193.7 140 72.9
Ciclev10005360m.g Citrus clementina HOM05D003793 ORTHO05D004471 6.1e-47 191.4 141 65.2
Ciclev10032026m.g Citrus clementina HOM05D003793 ORTHO05D004471 6.1e-47 191.4 141 65.2
Oeu027984.2 Olea europaea HOM05D003793 ORTHO05D004471 1.4e-46 190.3 133 73.7
unitig_578.g15801 Utricularia gibba HOM05D003793 ORTHO05D004471 1.4e-46 190.3 135 73.3
Cfa016078 Carpinus fangiana HOM05D003793 ORTHO05D004471 1.8e-46 189.9 145 68.3
Hma1.2p1_0419F.1_g149530 Hydrangea macrophylla HOM05D003793 ORTHO05D004471 2.3e-46 189.5 112 78.6
Ah.04g156140 Amaranthus hybridus HOM05D003793 ORTHO05D004471 3.9e-46 188.7 125 72.0
Haze_00367 Corylus avellana HOM05D003793 ORTHO05D004471 6.7e-46 188.0 145 68.3
HanXRQChr11g0342111 Helianthus annuus HOM05D003793 ORTHO05D004471 8.8e-46 187.6 156 60.9
Thecc.05G223100 Theobroma cacao HOM05D003793 ORTHO05D004471 8.8e-46 187.6 152 63.8
PSO210G3487 Papaver somniferum HOM05D003793 ORTHO05D004471 1.1e-45 187.2 151 64.9
COL.COLO4_15127 Corchorus olitorius HOM05D003793 ORTHO05D004471 1.5e-45 186.8 158 60.8
Nitab4.5_0006250g0010 Nicotiana tabacum HOM05D003793 ORTHO05D004471 2.0e-45 186.4 148 65.5
Prupe.7G118300 Prunus persica HOM05D003793 ORTHO05D004471 2.0e-45 186.4 164 61.0
Medtr1g014690 Medicago truncatula HOM05D003793 ORTHO05D004471 4.4e-45 185.3 115 76.5
PSO210G3154 Papaver somniferum HOM05D003793 ORTHO05D004471 4.4e-45 185.3 154 63.6
Solyc08g076360.4 Solanum lycopersicum HOM05D003793 ORTHO05D004471 4.4e-45 185.3 132 68.2
Lsat_1_v5_gn_2_104420 Lactuca sativa HOM05D003793 ORTHO05D004471 5.7e-45 184.9 135 68.9
Psat6g024400 Pisum sativum HOM05D003793 ORTHO05D004471 7.4e-45 184.5 117 74.4
Ca_13083_v3 Cicer arietinum L. HOM05D003793 ORTHO05D004471 1.3e-44 183.7 124 71.8
Gohir.D03G055300 Gossypium hirsutum HOM05D003793 ORTHO05D004471 2.2e-44 183.0 125 71.2
Gorai.003G058100 Gossypium raimondii HOM05D003793 ORTHO05D004471 2.2e-44 183.0 125 71.2
Hund26874 Selenicereus undatus HOM05D003793 ORTHO05D004471 2.2e-44 183.0 118 71.2
Dinv29122 Davidia involucrata HOM05D003793 ORTHO05D004471 2.8e-44 182.6 164 59.8
Aqoxy6G01754 Aquilegia oxysepala HOM05D003793 ORTHO05D004471 3.7e-44 182.2 120 73.3
CAN.G726.8 Capsicum annuum HOM05D003793 ORTHO05D004471 4.8e-44 181.8 168 58.3
Duzib177G0459 Durio zibethinus HOM05D003793 ORTHO05D004471 6.3e-44 181.4 122 73.0
ECA233G1952 Erigeron canadensis HOM05D003793 ORTHO05D004471 6.3e-44 181.4 131 68.7
HanXRQChr08g0217471 Helianthus annuus HOM05D003793 ORTHO05D004471 1.1e-43 180.6 159 60.4
Lsat_1_v5_gn_8_24121 Lactuca sativa HOM05D003793 ORTHO05D004471 1.1e-43 180.6 129 69.0
Aqoxy6G01753 Aquilegia oxysepala HOM05D003793 ORTHO05D004471 1.8e-43 179.9 115 75.7
EL10Ac3g05040 Beta vulgaris HOM05D003793 ORTHO05D004471 2.4e-43 179.5 131 64.1
Gohir.A02G114300 Gossypium hirsutum HOM05D003793 ORTHO05D004471 2.4e-43 179.5 116 74.1
HanXRQChr08g0217461 Helianthus annuus HOM05D003793 ORTHO05D004471 2.4e-43 179.5 125 69.6
TPR.G38857 Trifolium pratense HOM05D003793 ORTHO05D004471 2.4e-43 179.5 118 74.6
Duzib106G1724 Durio zibethinus HOM05D003793 ORTHO05D004471 3.1e-43 179.1 139 66.9
Glyma.12G014200 Glycine max HOM05D003793 ORTHO05D004471 3.1e-43 179.1 115 75.7
VMungo1127G0200 Vigna mungo HOM05D003793 ORTHO05D004471 3.1e-43 179.1 117 75.2
VMungo1127G2010 Vigna mungo HOM05D003793 ORTHO05D004471 4.1e-43 178.7 117 76.1
ECA238G4812 Erigeron canadensis HOM05D003793 ORTHO05D004471 7.0e-43 177.9 124 66.9
Glyma.12G014300 Glycine max HOM05D003793 ORTHO05D004471 7.0e-43 177.9 117 74.4
QL09p020586 Quercus lobata HOM05D003793 ORTHO05D004471 7.0e-43 177.9 147 61.2
HanXRQChr08g0217581 Helianthus annuus HOM05D003793 ORTHO05D004471 9.1e-43 177.6 152 62.5
Phvul.011G017200 Phaseolus vulgaris HOM05D003793 ORTHO05D004471 9.1e-43 177.6 117 74.4
Glyma.09G222800 Glycine max HOM05D003793 ORTHO05D004471 1.2e-42 177.2 131 71.0
Actinidia34215 Actinidia chinensis HOM05D003793 ORTHO05D004471 3.5e-42 175.6 126 70.6
PGR142G3821 Punica granatum HOM05D003793 ORTHO05D004471 3.5e-42 175.6 130 68.5
HPP92_022760 Vanilla planifolia HOM05D003793 ORTHO05D004471 3.5e-42 175.6 120 69.2
Phvul.011G017100 Phaseolus vulgaris HOM05D003793 ORTHO05D004471 4.5e-42 175.3 117 74.4
Sc13g0011010 Simmondsia chinensis HOM05D003793 ORTHO05D004471 5.9e-42 174.9 175 55.4
Sp5g19260 Schrenkiella parvula HOM05D003793 ORTHO05D004471 7.7e-42 174.5 126 68.3
FvH4_6g17810 Fragaria vesca HOM05D003793 ORTHO05D004471 1.0e-41 174.1 127 70.1
Gohir.A13G157500 Gossypium hirsutum HOM05D003793 ORTHO05D004471 1.0e-41 174.1 122 73.0
RcHm_v2.0_Chr3g0472061 Rosa chinensis HOM05D003793 ORTHO05D004471 1.0e-41 174.1 162 59.9
MD14G1015100 Malus domestica HOM05D003793 ORTHO05D004471 1.3e-41 173.7 150 62.7
TAR375G0772 Trochodendron aralioides HOM05D003793 ORTHO05D004471 1.3e-41 173.7 126 69.8
AT1G64970 Arabidopsis thaliana HOM05D003793 ORTHO05D004471 2.2e-41 172.9 128 68.8
arahy.Tifrunner.gnm1.ann1.TXPN3Z Arachis hypogaea HOM05D003793 ORTHO05D004471 2.2e-41 172.9 116 73.3
AUR62028213 Chenopodium quinoa HOM05D003793 ORTHO05D004471 2.2e-41 172.9 120 68.3
AL2G19520 Arabidopsis lyrata HOM05D003793 ORTHO05D004471 2.9e-41 172.6 144 64.6
arahy.Tifrunner.gnm1.ann1.SYC9J3 Arachis hypogaea HOM05D003793 ORTHO05D004471 3.8e-41 172.2 116 72.4
Os02g0701600 Oryza sativa ssp. japonica HOM05D003793 ORTHO05D004471 3.8e-41 172.2 115 70.4
CDE02G3720 Ceratophyllum demersum HOM05D003793 ORTHO05D004471 5.0e-41 171.8 121 67.8
FAN05G0338 Fragaria x ananassa HOM05D003793 ORTHO05D004471 5.0e-41 171.8 136 66.2
MD12G1017400 Malus domestica HOM05D003793 ORTHO05D004471 5.0e-41 171.8 137 65.7
vmacro22191 Vaccinium macrocarpon HOM05D003793 ORTHO05D004471 5.0e-41 171.8 132 63.6
A02p23940 Brassica napus HOM05D003793 ORTHO05D004471 6.5e-41 171.4 129 68.2
FAN02G3282 Fragaria x ananassa HOM05D003793 ORTHO05D004471 6.5e-41 171.4 137 65.7
vmacro09916 Vaccinium macrocarpon HOM05D003793 ORTHO05D004471 6.5e-41 171.4 126 67.5
Thhalv10018768m.g Eutrema salsugineum HOM05D003793 ORTHO05D004471 8.5e-41 171.0 149 61.1
FAN05G4652 Fragaria x ananassa HOM05D003793 ORTHO05D004471 8.5e-41 171.0 136 66.2
Lj3g0009427 Lotus japonicus HOM05D003793 ORTHO05D004471 8.5e-41 171.0 115 72.2
Potri.013G077000 Populus trichocarpa HOM05D003793 ORTHO05D004471 8.5e-41 171.0 119 68.1
arahy.Tifrunner.gnm1.ann1.L925XS Arachis hypogaea HOM05D003793 ORTHO05D004471 1.5e-40 170.2 116 72.4
BcaB05g24071 Brassica carinata HOM05D003793 ORTHO05D004471 1.5e-40 170.2 139 64.0
BcaC03g14668 Brassica carinata HOM05D003793 ORTHO05D004471 1.9e-40 169.9 133 65.4
C02p21050 Brassica napus HOM05D003793 ORTHO05D004471 1.9e-40 169.9 129 67.4
MELO3C024736.2 Cucumis melo HOM05D003793 ORTHO05D004471 1.9e-40 169.9 130 63.8
THA.LOC104805718 Tarenaya hassleriana HOM05D003793 ORTHO05D004471 1.9e-40 169.9 143 60.8
THA.LOC104821707 Tarenaya hassleriana HOM05D003793 ORTHO05D004471 1.9e-40 169.9 177 54.8
HPP92_027662 Vanilla planifolia HOM05D003793 ORTHO05D004471 1.9e-40 169.9 129 65.9
Manes.08G160400 Manihot esculenta HOM05D003793 ORTHO05D004471 2.5e-40 169.5 165 53.9
Rhsim09G0214000 Rhododendron simsii HOM05D003793 ORTHO05D004471 2.5e-40 169.5 178 51.7
BraA02t06348Z Brassica rapa HOM05D003793 ORTHO05D004471 3.2e-40 169.1 139 64.0
Carub.0002s1011 Capsella rubella HOM05D003793 ORTHO05D004471 4.2e-40 168.7 122 71.3
CDE12G0793 Ceratophyllum demersum HOM05D003793 ORTHO05D004471 4.2e-40 168.7 123 65.9
arahy.Tifrunner.gnm1.ann1.5NG4EY Arachis hypogaea HOM05D003793 ORTHO05D004471 5.5e-40 168.3 117 74.4
BcaC03g16025 Brassica carinata HOM05D003793 ORTHO05D004471 5.5e-40 168.3 153 59.5
A02p12940 Brassica napus HOM05D003793 ORTHO05D004471 5.5e-40 168.3 139 64.0
C02p37750 Brassica napus HOM05D003793 ORTHO05D004471 5.5e-40 168.3 153 59.5
BolC2t09793H Brassica oleracea HOM05D003793 ORTHO05D004471 5.5e-40 168.3 153 59.5
HPP92_027670 Vanilla planifolia HOM05D003793 ORTHO05D004471 5.5e-40 168.3 140 61.4
BraA02t07388Z Brassica rapa HOM05D003793 ORTHO05D004471 9.4e-40 167.5 153 59.5
Sed0025175 Sechium edule HOM05D003793 ORTHO05D004471 9.4e-40 167.5 124 66.9
BolC2t08246H Brassica oleracea HOM05D003793 ORTHO05D004471 1.2e-39 167.2 129 65.9
CDE11G0124 Ceratophyllum demersum HOM05D003793 ORTHO05D004471 1.2e-39 167.2 115 69.6
Duzib177G0347 Durio zibethinus HOM05D003793 ORTHO05D004471 2.1e-39 166.4 125 64.8
Zm00001eb251860 Zea mays HOM05D003793 ORTHO05D004471 2.1e-39 166.4 145 58.6
Eucgr.K00068 Eucalyptus grandis HOM05D003793 ORTHO05D004471 2.7e-39 166.0 158 57.0
Lalb_Chr05g0211181 Lupinus albus HOM05D003793 ORTHO05D004471 3.6e-39 165.6 122 72.1
Sabra13G0066000 Salix brachista HOM05D003793 ORTHO05D004471 4.7e-39 165.2 138 60.1
ClCG02G007700 Citrullus lanatus HOM05D003793 ORTHO05D004471 1.8e-38 163.3 130 63.1
Actinidia33800 Actinidia chinensis HOM05D003793 ORTHO05D004471 5.2e-38 161.8 142 59.9
CARHR056370 Cardamine hirsuta HOM05D003793 ORTHO05D004471 6.7e-38 161.4 132 64.4
AUR62002095 Chenopodium quinoa HOM05D003793 ORTHO05D004471 1.5e-37 160.2 131 61.1
CsaV3_2G036010 Cucumis sativus L. HOM05D003793 ORTHO05D004471 2.0e-37 159.8 169 50.3
CANSAT21G0915 Cannabis sativa HOM05D003793 ORTHO05D004471 2.6e-37 159.5 118 66.9
SEGI_24486 Sequoiadendron giganteum HOM05D003793 ORTHO05D004471 2.2e-36 156.4 127 63.8
Aa31LG2G2160 Aethionema arabicum HOM05D003793 ORTHO05D004471 3.1e-35 152.5 173 51.4
Mapoly0025s0046 Marchantia polymorpha HOM05D003793 ORTHO05D004471 1.2e-34 150.6 177 45.2
SMO145G0054 Selaginella moellendorffii HOM05D003793 ORTHO05D004471 7.7e-34 147.9 130 57.7
Aa31LG2G2170 Aethionema arabicum HOM05D003793 ORTHO05D004471 1.7e-33 146.7 129 58.9
AagrBONN_evm.TU.Sc2ySwM_362.1718 Anthoceros agrestis HOM05D003793 ORTHO05D004471 1.7e-33 146.7 154 50.6
Medtr4g036005 Medicago truncatula HOM05D003793 ORTHO05D004471 1.7e-33 146.7 118 59.3
Pp3c11_23800 Physcomitrium patens HOM05D003793 ORTHO05D004471 5.5e-32 141.7 116 62.1
CiPaw.05G212400 Carya illinoinensis HOM05D003793 ORTHO05D004471 1.2e-31 140.6 92 71.7
Cc11_g00040 Coffea canephora HOM05D003793 ORTHO05D004471 1.2e-31 140.6 92 72.8
GSVIVG01024322001 Vitis vinifera HOM05D003793 ORTHO05D004471 2.7e-31 139.4 92 72.8
Atru.chr12.1866 Acer truncatum HOM05D003793 ORTHO05D004471 8.0e-31 137.9 89 71.9
HPP92_027155 Vanilla planifolia HOM05D003793 ORTHO05D004471 3.0e-30 136.0 112 60.7
Atru.chr12.1860 Acer truncatum HOM05D003793 ORTHO05D004471 1.5e-29 133.7 91 70.3
Cc00_g27150 Coffea canephora HOM05D003793 ORTHO05D004471 3.4e-29 132.5 122 54.1
Nn3g21149 Nelumbo nucifera HOM05D003793 ORTHO05D004471 7.5e-29 131.3 141 48.9
CDE11G0369 Ceratophyllum demersum HOM05D003793 ORTHO05D004471 2.4e-27 126.3 82 74.4
ATR0829G050 Amborella trichopoda HOM05D003793 ORTHO05D004471 1.6e-26 123.6 115 47.8
Hund00469 Selenicereus undatus HOM05D003793 ORTHO05D004471 2.7e-26 122.9 129 50.4
Hund00468 Selenicereus undatus HOM05D003793 ORTHO05D004471 4.5e-26 122.1 129 51.2
FAN14G1236 Fragaria x ananassa HOM05D003793 ORTHO05D004471 5.9e-26 121.7 91 67.0
MCO16G568 Micromonas commoda HOM05D003793 ORTHO05D004471 1.3e-25 120.6 119 53.8
Cre09.g393400 Chlamydomonas reinhardtii HOM05D003793 ORTHO05D004471 5.0e-25 118.6 115 53.0
Rhsim09G0190300 Rhododendron simsii HOM05D003793 ORTHO05D004471 1.5e-24 117.1 92 65.2
PGR142G4176 Punica granatum HOM05D003793 ORTHO05D004471 3.3e-24 115.9 131 50.4
SMO115G0333 Selaginella moellendorffii HOM05D003793 ORTHO05D004471 1.6e-23 113.6 111 47.7
SMO119G0398 Selaginella moellendorffii HOM05D003793 ORTHO05D004471 1.6e-23 113.6 108 50.0
SMO119G0172 Selaginella moellendorffii HOM05D003793 ORTHO05D004471 8.0e-23 111.3 111 46.8
SMO351G0374 Selaginella moellendorffii HOM05D003793 ORTHO05D004471 1.4e-22 110.5 111 46.8
Peaxi162Scf00052g00016 Petunia axillaris HOM05D003793 ORTHO05D004471 1.2e-21 107.5 118 52.5
PGR142G3948 Punica granatum HOM05D003793 ORTHO05D004471 1.2e-21 107.5 186 37.6
QL09p020572 Quercus lobata HOM05D003793 ORTHO05D004471 1.4e-19 100.5 75 66.7
PGR142G2095 Punica granatum HOM05D003793 ORTHO05D004471 1.5e-16 90.5 97 55.7
Nitab4.5_0004045g0040 Nicotiana tabacum HOM05D003793 ORTHO05D004471 1.2e-15 87.4 54 79.6
QL09p020551 Quercus lobata HOM05D003793 ORTHO05D004471 1.6e-15 87.0 66 63.6
CDE01G0103 Ceratophyllum demersum HOM05D003793 ORTHO05D004471 3.6e-15 85.9 59 66.1
ATR0829G208 Amborella trichopoda HOM05D003793 ORTHO05D004471 2.3e-14 83.2 59 69.5
CSS0037165 Camellia sinensis var. sinensis HOM05D003793 ORTHO05D004471 5.2e-14 82.0 71 57.7
ATR1057G001 Amborella trichopoda HOM05D003793 ORTHO05D038313 6.8e-14 81.6 57 70.2
Cc06_g18700 Coffea canephora HOM05D003793 ORTHO05D004471 1.5e-13 80.5 62 59.7
Cre14.g624350 Chlamydomonas reinhardtii HOM05D003793 ORTHO05D004471 2.9e-12 76.3 114 40.4
MCO15G681 Micromonas commoda HOM05D003793 ORTHO05D004471 2.4e-11 73.2 109 38.5
Mapoly0921s0001 Marchantia polymorpha HOM05D003793 ORTHO05D004471 4.1e-11 72.4 83 48.2
Cc09_g09690 Coffea canephora HOM05D003793 ORTHO05D004471 5.4e-11 72.0 78 48.7
PRCOL_00002005 Prasinoderma coloniale HOM05D003793 ORTHO05D004471 1.2e-10 70.9 105 41.0
MCO13G309 Micromonas commoda HOM05D003793 ORTHO05D004471 2.0e-10 70.1 121 35.5
Cpa.g.sc43.146 Carica papaya HOM05D003793 ORTHO05D004471 3.9e-09 65.9 48 72.9
HanXRQChr14g0462151 Helianthus annuus HOM05D003793 ORTHO05D004471 5.0e-09 65.5 44 61.4
RcHm_v2.0_Chr5g0034841 Rosa chinensis HOM05D003793 ORTHO05D038313 1.1e-06 57.8 29 86.2
CSS0048120 Camellia sinensis var. sinensis HOM05D003793 ORTHO05D004471 8.9e-06 54.7 68 45.6


User provided reference genes

Program Settings