Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow3G2105 Salvia bowleyana HOM05D006507 ORTHO05D007296 0.0e+00 2241.8 1155 100.0
MSTRG.12615 Avicennia marina HOM05D006507 ORTHO05D007296 1.9e-191 674.1 1144 43.1
Migut.N02633 Erythranthe guttata HOM05D006507 ORTHO05D007296 7.2e-138 496.1 1004 38.7
SGA_v2.0_scaffold80G25739 Striga asiatica HOM05D006507 ORTHO05D007296 8.5e-123 446.0 1173 33.9
Oeu022272.1 Olea europaea HOM05D006507 ORTHO05D007296 1.9e-93 348.6 1161 31.1
CSS0009997 Camellia sinensis var. sinensis HOM05D006507 ORTHO05D007296 7.6e-55 220.3 1177 26.4
Nitab4.5_0000270g0010 Nicotiana tabacum HOM05D006507 ORTHO05D007296 5.6e-50 204.1 1265 27.0
Sopen06g031820 Solanum pennellii HOM05D006507 ORTHO05D007296 3.2e-45 188.3 1190 27.0
Atru.chr3.3722 Acer truncatum HOM05D006507 ORTHO05D007296 1.9e-42 179.1 1273 25.1
Rhsim13G0091300 Rhododendron simsii HOM05D006507 ORTHO05D007296 5.7e-42 177.6 1200 26.2
TAR633G2802 Trochodendron aralioides HOM05D006507 ORTHO05D007296 1.8e-40 172.6 1174 24.9
DCAR_006032 Daucus carota HOM05D006507 ORTHO05D007296 2.0e-39 169.1 1126 25.8
Cfa011382 Carpinus fangiana HOM05D006507 ORTHO05D007296 1.1e-37 163.3 1316 24.5
PGR102G3212 Punica granatum HOM05D006507 ORTHO05D007296 1.4e-37 162.9 1249 25.3
PGSC0003DMG400007499 Solanum tuberosum HOM05D006507 ORTHO05D007296 5.5e-37 161.0 1226 25.9
Duzib170G0831 Durio zibethinus HOM05D006507 ORTHO05D007296 3.9e-35 154.8 1315 24.6
Migut.N02632 Erythranthe guttata HOM05D006507 ORTHO05D007296 8.7e-35 153.7 178 52.8
Actinidia24071 Actinidia chinensis HOM05D006507 ORTHO05D007296 2.2e-33 149.1 1157 26.1
Lsat_1_v5_gn_2_25380 Lactuca sativa HOM05D006507 ORTHO05D007296 2.2e-33 149.1 1080 24.8
Aqoxy2G01879 Aquilegia oxysepala HOM05D006507 ORTHO05D007296 3.7e-33 148.3 1133 25.1
AL8G36760 Arabidopsis lyrata HOM05D006507 ORTHO05D007296 1.1e-32 146.7 1200 24.7
A10p17300 Brassica napus HOM05D006507 ORTHO05D007296 5.3e-32 144.4 1221 24.1
COL.COLO4_25271 Corchorus olitorius HOM05D006507 ORTHO05D007296 5.3e-32 144.4 1333 25.1
Thhalv10012478m.g Eutrema salsugineum HOM05D006507 ORTHO05D007296 5.3e-32 144.4 1199 24.8
Cc01_g11720 Coffea canephora HOM05D006507 ORTHO05D007296 9.0e-32 143.7 1191 25.2
TWI79G0725 Tripterygium wilfordii HOM05D006507 ORTHO05D007296 2.0e-31 142.5 1248 25.0
BolC9t58131H Brassica oleracea HOM05D006507 ORTHO05D007296 2.6e-31 142.1 1227 23.7
Lj2A1039T65 Lonicera japonica HOM05D006507 ORTHO05D007296 5.9e-31 141.0 872 27.5
Sc21g0000130 Simmondsia chinensis HOM05D006507 ORTHO05D007296 1.0e-30 140.2 1316 25.6
Nitab4.5_0001698g0050 Nicotiana tabacum HOM05D006507 ORTHO05D007296 2.2e-30 139.0 1286 25.0
Thecc.09G262500 Theobroma cacao HOM05D006507 ORTHO05D007296 5.0e-30 137.9 1404 23.9
C09p52640 Brassica napus HOM05D006507 ORTHO05D007296 6.5e-30 137.5 1226 23.2
BraA10t43814Z Brassica rapa HOM05D006507 ORTHO05D007296 1.1e-29 136.7 1173 24.2
Haze_23947 Corylus avellana HOM05D006507 ORTHO05D007296 1.4e-29 136.3 560 30.2
CARHR273800 Cardamine hirsuta HOM05D006507 ORTHO05D007296 9.4e-29 133.7 1228 24.8
THA.LOC104810833 Tarenaya hassleriana HOM05D006507 ORTHO05D007296 1.2e-28 133.3 1199 23.7
Carub.0008s2088 Capsella rubella HOM05D006507 ORTHO05D007296 6.1e-28 131.0 1240 23.8
Dinv32808 Davidia involucrata HOM05D006507 ORTHO05D007296 6.1e-28 131.0 119 57.1
QL01p036413 Quercus lobata HOM05D006507 ORTHO05D007296 1.4e-27 129.8 644 28.6
CiPaw.13G105600 Carya illinoinensis HOM05D006507 ORTHO05D007296 1.8e-27 129.4 388 34.5
Atru.chr3.3727 Acer truncatum HOM05D006507 ORTHO05D007296 3.0e-27 128.6 461 33.2
Solyc06g075420.1 Solanum lycopersicum HOM05D006507 ORTHO05D007296 1.1e-26 126.7 197 44.7
MELO3C025723.2 Cucumis melo HOM05D006507 ORTHO05D007296 1.5e-26 126.3 1347 23.3
ECA238G2561 Erigeron canadensis HOM05D006507 ORTHO05D007296 2.5e-26 125.6 115 58.3
GSVIVG01025113001 Vitis vinifera HOM05D038408 ORTHO05D007296 4.3e-26 124.8 1184 24.8
Gohir.D07G120101 Gossypium hirsutum HOM05D006507 ORTHO05D007296 5.7e-26 124.4 1303 24.7
arahy.Tifrunner.gnm1.ann1.M2HQ4Q Arachis hypogaea HOM05D006507 ORTHO05D007296 1.7e-25 122.9 1315 23.5
arahy.Tifrunner.gnm1.ann1.NP2AMW Arachis hypogaea HOM05D006507 ORTHO05D007296 2.8e-25 122.1 1320 23.8
Sp6g21800 Schrenkiella parvula HOM05D006507 ORTHO05D007296 3.7e-25 121.7 123 54.5
Sed0026220 Sechium edule HOM05D006507 ORTHO05D007296 3.7e-25 121.7 1252 23.0
Gorai.001G129300 Gossypium raimondii HOM05D006507 ORTHO05D007296 4.8e-25 121.3 1296 24.3
vmacro03159 Vaccinium macrocarpon HOM05D006507 ORTHO05D007296 4.8e-25 121.3 99 62.6
Manes.11G139900 Manihot esculenta HOM05D006507 ORTHO05D007296 6.3e-25 120.9 677 26.1
PSO384G3963 Papaver somniferum HOM05D006507 ORTHO05D007296 6.3e-25 120.9 88 65.9
Actinidia08403 Actinidia chinensis HOM05D006507 ORTHO05D007296 8.2e-25 120.6 74 77.0
Ca_19235_v3 Cicer arietinum L. HOM05D006507 ORTHO05D007296 8.2e-25 120.6 1277 23.6
ClCG02G020740 Citrullus lanatus HOM05D006507 ORTHO05D007296 1.1e-24 120.2 1313 23.8
HanXRQChr06g0183281 Helianthus annuus HOM05D006507 ORTHO05D007296 1.8e-24 119.4 132 48.5
PSO339G6510 Papaver somniferum HOM05D006507 ORTHO05D007296 4.1e-24 118.2 88 62.5
CAN.G1001.2 Capsicum annuum HOM05D006507 ORTHO05D007296 5.3e-24 117.9 1070 24.1
FAN11G1966 Fragaria x ananassa HOM05D006507 ORTHO05D007296 6.9e-24 117.5 1274 24.0
AT5G60150 Arabidopsis thaliana HOM05D006507 ORTHO05D007296 2.6e-23 115.5 73 71.2
Potri.005G131500 Populus trichocarpa HOM05D006507 ORTHO05D007296 3.4e-23 115.2 1337 23.6
Ciclev10027733m.g Citrus clementina HOM05D006507 ORTHO05D007296 4.5e-23 114.8 131 52.7
Cpa.g.sc139.57 Carica papaya HOM05D006507 ORTHO05D007296 7.7e-23 114.0 69 75.4
Glyma.11G150661 Glycine max HOM05D006507 ORTHO05D007296 1.7e-22 112.8 62 82.3
Gohir.A07G115600 Gossypium hirsutum HOM05D006507 ORTHO05D007296 6.5e-22 110.9 170 43.5
Lj3g0018374 Lotus japonicus HOM05D006507 ORTHO05D007296 1.9e-21 109.4 62 80.6
Sabra05G0106900 Salix brachista HOM05D006507 ORTHO05D007296 1.9e-21 109.4 1343 23.7
Prupe.6G092200 Prunus persica HOM05D006507 ORTHO05D007296 2.5e-21 109.0 186 39.8
MD03G1109500 Malus domestica HOM05D006507 ORTHO05D007296 4.2e-21 108.2 179 43.6
Glyma.12G072900 Glycine max HOM05D006507 ORTHO05D007296 7.2e-21 107.5 238 36.6
CANSAT54G2524 Cannabis sativa HOM05D006507 ORTHO05D007296 9.4e-21 107.1 179 43.0
EL10Ac9g22402 Beta vulgaris HOM05D006507 ORTHO05D007296 1.6e-20 106.3 1083 22.4
FAN16G3496 Fragaria x ananassa HOM05D006507 ORTHO05D007296 2.1e-20 105.9 1255 24.2
Lalb_Chr19g0137501 Lupinus albus HOM05D006507 ORTHO05D007296 2.1e-20 105.9 62 75.8
VMungo1127G1622 Vigna mungo HOM05D006507 ORTHO05D007296 2.1e-20 105.9 62 77.4
TPR.G2995 Trifolium pratense HOM05D006507 ORTHO05D007296 3.6e-20 105.1 62 80.6
Medtr4g061110 Medicago truncatula HOM05D006507 ORTHO05D007296 1.0e-19 103.6 66 74.2
CsaV3_6G021880 Cucumis sativus L. HOM05D006507 ORTHO05D007296 2.3e-19 102.4 1282 23.3
Nn2g12985 Nelumbo nucifera HOM05D006507 ORTHO05D007296 2.3e-19 102.4 417 28.8
AUR62006495 Chenopodium quinoa HOM05D006507 ORTHO05D007296 2.0e-18 99.4 69 66.7
AUR62025040 Chenopodium quinoa HOM05D006507 ORTHO05D007296 2.0e-18 99.4 69 66.7
SEGI_16529 Sequoiadendron giganteum HOM05D006507 ORTHO05D007296 9.7e-18 97.1 63 68.3
Hma1.2p1_2156F.1_g315450 Hydrangea macrophylla HOM05D006507 ORTHO05D007296 2.2e-17 95.9 81 59.3
RcHm_v2.0_Chr5g0061361 Rosa chinensis HOM05D006507 ORTHO05D007296 2.8e-17 95.5 182 37.9
HanXRQChr06g0183291 Helianthus annuus HOM05D006507 ORTHO05D007296 1.4e-16 93.2 129 44.2
FvH4_3g33790 Fragaria vesca HOM05D006507 ORTHO05D007296 1.8e-16 92.8 439 28.2
HPP92_026984 Vanilla planifolia HOM05D006507 ORTHO05D007296 5.3e-16 91.3 64 64.1
Cpa.g.sc139.58 Carica papaya HOM05D006507 ORTHO05D007296 1.5e-15 89.7 106 52.8
Hma1.2p1_0840F.1_g226520 Hydrangea macrophylla HOM05D006507 ORTHO05D007296 1.5e-15 89.7 60 75.0
Sopen02g037950 Solanum pennellii HOM05D000002 ORTHO05D000001 2.6e-15 89.0 204 36.3
Os12g0102700 Oryza sativa ssp. japonica HOM05D006507 ORTHO05D007296 3.5e-15 88.6 374 27.0
vmacro03160 Vaccinium macrocarpon HOM05D006507 ORTHO05D007296 7.7e-15 87.4 221 35.3
CAN.G1001.3 Capsicum annuum HOM05D006507 ORTHO05D007296 1.0e-14 87.0 103 50.5
Actinidia07103 Actinidia chinensis HOM05D006507 ORTHO05D007296 1.7e-14 86.3 60 70.0
Aa31LG1G12330 Aethionema arabicum HOM05D006507 ORTHO05D007296 1.7e-14 86.3 348 30.5
Psat7g223080 Pisum sativum HOM05D006507 ORTHO05D007296 1.7e-14 86.3 390 25.9
Solyc06g075410.4 Solanum lycopersicum HOM05D006507 ORTHO05D007296 2.2e-14 85.9 148 41.9
HPP92_015411 Vanilla planifolia HOM05D006507 ORTHO05D007296 2.9e-14 85.5 142 38.7
AagrBONN_evm.TU.Sc2ySwM_368.2680 Anthoceros agrestis HOM05D006507 ORTHO05D007296 7.2e-13 80.9 93 48.4
ATR1159G075 Amborella trichopoda HOM05D006507 ORTHO05D007296 2.7e-12 79.0 713 24.4
Sopen02g037960 Solanum pennellii HOM05D006507 ORTHO05D007296 6.1e-12 77.8 87 55.2
FAN21G2403 Fragaria x ananassa HOM05D006507 ORTHO05D007296 8.0e-12 77.4 460 27.6
Pp3c16_7200 Physcomitrium patens HOM05D034648 ORTHO05D007296 8.0e-12 77.4 62 56.5
CANSAT54G0008 Cannabis sativa HOM05D006507 ORTHO05D007296 1.4e-11 76.6 381 28.1
RcHm_v2.0_Chr5g0061351 Rosa chinensis HOM05D006507 ORTHO05D007296 4.0e-11 75.1 130 42.3
Peaxi162Scf00072g00227 Petunia axillaris HOM05D006507 ORTHO05D007296 5.2e-11 74.7 103 47.6
Lalb_Chr19g0137491 Lupinus albus HOM05D006507 ORTHO05D007296 2.6e-10 72.4 135 40.0
Mapoly0001s0188 Marchantia polymorpha HOM05D006507 ORTHO05D007296 2.6e-10 72.4 59 59.3
Sc24g0004230 Simmondsia chinensis HOM05D009348 ORTHO05D010856 1.3e-09 70.1 96 45.8
MD03G1109700 Malus domestica HOM05D006507 ORTHO05D007296 5.3e-08 64.7 67 53.7
Hma1.2p1_0660F.1_g197490 Hydrangea macrophylla HOM05D006507 ORTHO05D007296 1.6e-07 63.2 61 59.0
Peaxi162Scf00072g00226 Petunia axillaris HOM05D006507 ORTHO05D007296 2.0e-07 62.8 78 43.6
Carub.0005s1987 Capsella rubella HOM05D003265 ORTHO05D003819 5.9e-07 61.2 161 35.4
Manes.08G003400 Manihot esculenta HOM05D003265 ORTHO05D003819 7.7e-07 60.8 71 49.3
BcaC07g39697 Brassica carinata HOM05D003265 ORTHO05D003819 1.7e-06 59.7 146 34.2
BolC8t50462H Brassica oleracea HOM05D003265 ORTHO05D003819 1.7e-06 59.7 146 34.2
Solyc09g007340.4 Solanum lycopersicum HOM05D000855 ORTHO05D002321 1.7e-06 59.7 147 32.7
Sopen09g002240 Solanum pennellii HOM05D003265 ORTHO05D003819 1.7e-06 59.7 147 32.7
A09p46340 Brassica napus HOM05D003265 ORTHO05D003819 2.9e-06 58.9 146 34.2
Duzib128G1251 Durio zibethinus HOM05D003265 ORTHO05D003819 2.9e-06 58.9 59 57.6
CDE04G2211 Ceratophyllum demersum HOM05D034970 ORTHO05D007296 5.0e-06 58.2 60 50.0
CBR_g19214 Chara braunii HOM05D006507 ORTHO05D007296 6.5e-06 57.8 59 52.5
Actinidia13106 Actinidia chinensis HOM05D003265 ORTHO05D003819 8.5e-06 57.4 67 52.2
vmacro20061 Vaccinium macrocarpon HOM05D003265 ORTHO05D003819 8.5e-06 57.4 162 34.6


User provided reference genes

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