Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow3G2100 Salvia bowleyana HOM05D004070 ORTHO05D004904 0.0e+00 1454.9 712 100.0
SalBow3G0248 Salvia bowleyana HOM05D004070 ORTHO05D004904 0.0e+00 1436.0 712 98.6
MSTRG.8925 Avicennia marina HOM05D004070 ORTHO05D004904 1.8e-309 1065.4 722 71.9
Migut.F00635 Erythranthe guttata HOM05D004070 ORTHO05D004904 2.6e-303 1045.0 716 70.4
SGA_v2.0_scaffold60G20962 Striga asiatica HOM05D004070 ORTHO05D004904 8.5e-291 1003.4 716 69.4
Oeu043174.1 Olea europaea HOM05D004070 ORTHO05D004904 5.0e-283 977.6 718 67.1
Dinv10587 Davidia involucrata HOM05D004070 ORTHO05D004904 9.5e-274 946.8 706 64.7
Peaxi162Scf00284g00526 Petunia axillaris HOM05D004070 ORTHO05D004904 3.0e-272 941.8 711 63.6
Sopen06g016660 Solanum pennellii HOM05D004070 ORTHO05D004904 1.7e-267 926.0 720 63.1
Nitab4.5_0003710g0040 Nicotiana tabacum HOM05D004070 ORTHO05D004904 5.0e-267 924.5 718 62.3
Solyc06g050930.3 Solanum lycopersicum HOM05D004070 ORTHO05D004904 5.0e-267 924.5 720 62.8
TAR623G0471 Trochodendron aralioides HOM05D004070 ORTHO05D004904 1.6e-265 919.5 696 65.5
Rhsim03G0147100 Rhododendron simsii HOM05D004070 ORTHO05D004904 8.0e-265 917.1 687 65.1
Nitab4.5_0000058g0090 Nicotiana tabacum HOM05D004070 ORTHO05D004904 9.8e-263 910.2 724 61.3
CAN.G19.7 Capsicum annuum HOM05D004070 ORTHO05D004904 3.2e-261 905.2 718 62.5
Duzib128G0764 Durio zibethinus HOM05D004070 ORTHO05D004904 1.6e-260 902.9 679 64.1
Lj1A961T78 Lonicera japonica HOM05D004070 ORTHO05D004904 3.0e-259 898.7 724 60.1
vmacro06948 Vaccinium macrocarpon HOM05D004070 ORTHO05D004904 4.3e-258 894.8 755 60.4
Gorai.012G079500 Gossypium raimondii HOM05D004070 ORTHO05D004904 1.6e-257 892.9 716 60.3
Migut.F01473 Erythranthe guttata HOM05D004070 ORTHO05D004904 2.1e-257 892.5 685 64.5
Thecc.10G010900 Theobroma cacao HOM05D004070 ORTHO05D004904 8.1e-257 890.6 701 62.1
Potri.010G184200 Populus trichocarpa HOM05D004070 ORTHO05D004904 5.2e-256 887.9 689 61.7
Sabra10G0141400 Salix brachista HOM05D004070 ORTHO05D004904 6.8e-256 887.5 715 60.4
Rhsim03G0146900 Rhododendron simsii HOM05D004070 ORTHO05D004904 5.8e-255 884.4 695 62.7
MD07G1226700 Malus domestica HOM05D004070 ORTHO05D004904 1.1e-253 880.2 723 59.1
Prupe.2G256300 Prunus persica HOM05D004070 ORTHO05D004904 1.4e-253 879.8 685 62.0
Ciclev10030777m.g Citrus clementina HOM05D004070 ORTHO05D004904 4.6e-252 874.8 703 61.0
MD01G1158000 Malus domestica HOM05D004070 ORTHO05D004904 4.6e-252 874.8 689 60.7
Gorai.011G290600 Gossypium raimondii HOM05D004070 ORTHO05D004904 1.7e-251 872.8 683 62.8
Gohir.A10G238300 Gossypium hirsutum HOM05D004070 ORTHO05D004904 6.6e-251 870.9 688 62.1
RcHm_v2.0_Chr1g0370971 Rosa chinensis HOM05D004070 ORTHO05D004904 8.6e-251 870.5 699 59.9
Gohir.D10G250200 Gossypium hirsutum HOM05D004070 ORTHO05D004904 1.9e-250 869.4 683 62.5
DCAR_011846 Daucus carota HOM05D004070 ORTHO05D004904 2.8e-249 865.5 696 60.6
TWI73G0078 Tripterygium wilfordii HOM05D004070 ORTHO05D004904 1.4e-248 863.2 696 59.8
Eucgr.J00174 Eucalyptus grandis HOM05D004070 ORTHO05D004904 2.4e-248 862.4 739 57.8
EL10Ac2g04896 Beta vulgaris HOM05D004070 ORTHO05D004904 6.8e-248 860.9 689 60.4
Manes.10G008700 Manihot esculenta HOM05D004070 ORTHO05D004904 2.2e-246 855.9 678 60.6
Lsat_1_v5_gn_2_125521 Lactuca sativa HOM05D004070 ORTHO05D004904 3.8e-246 855.1 674 61.6
Lj8A62T48 Lonicera japonica HOM05D004070 ORTHO05D004904 1.4e-245 853.2 610 66.2
QL08p063798 Quercus lobata HOM05D004070 ORTHO05D004904 3.2e-245 852.0 702 59.7
FvH4_7g25120 Fragaria vesca HOM05D004070 ORTHO05D004904 5.4e-245 851.3 706 59.1
ECA238G2061 Erigeron canadensis HOM05D004070 ORTHO05D004904 1.6e-244 849.7 679 60.1
Aqoxy1G01303 Aquilegia oxysepala HOM05D004070 ORTHO05D004904 8.7e-243 844.0 731 57.6
Atru.chr12.102 Acer truncatum HOM05D004070 ORTHO05D004904 1.1e-242 843.6 663 61.4
HanXRQChr17g0536301 Helianthus annuus HOM05D004070 ORTHO05D004904 7.3e-242 840.9 699 57.4
FAN03G3092 Fragaria x ananassa HOM05D004070 ORTHO05D004904 2.1e-241 839.3 720 57.6
CANSAT56G1738 Cannabis sativa HOM05D004070 ORTHO05D004904 4.7e-241 838.2 675 60.4
TPR.G27736 Trifolium pratense HOM05D004070 ORTHO05D004904 6.2e-241 837.8 680 60.1
Psat5g130680 Pisum sativum HOM05D004070 ORTHO05D004904 5.2e-240 834.7 689 60.1
FAN01G1500 Fragaria x ananassa HOM05D004070 ORTHO05D004904 2.0e-239 832.8 722 56.6
PSO765G0033 Papaver somniferum HOM05D004070 ORTHO05D004904 4.4e-239 831.6 713 55.8
Lj6g0014816 Lotus japonicus HOM05D004070 ORTHO05D004904 3.8e-238 828.6 687 59.5
PSO349G0044 Papaver somniferum HOM05D004070 ORTHO05D004904 6.4e-238 827.8 707 56.0
Glyma.11G232700 Glycine max HOM05D004070 ORTHO05D004904 1.1e-237 827.0 687 59.5
AUR62022946 Chenopodium quinoa HOM05D004070 ORTHO05D004904 4.2e-237 825.1 673 58.4
Haze_17281 Corylus avellana HOM05D004070 ORTHO05D004904 4.2e-237 825.1 684 59.2
FAN06G4674 Fragaria x ananassa HOM05D004070 ORTHO05D004904 9.3e-237 823.9 746 55.9
Medtr3g071610 Medicago truncatula HOM05D004070 ORTHO05D004904 9.3e-237 823.9 671 59.2
CiPaw.02G195800 Carya illinoinensis HOM05D004070 ORTHO05D004904 2.3e-235 819.3 691 58.0
AUR62012305 Chenopodium quinoa HOM05D004070 ORTHO05D004904 3.9e-235 818.5 688 57.0
Duzib106G0498 Durio zibethinus HOM05D004070 ORTHO05D004904 1.1e-234 817.0 717 56.9
CiPaw.12G018900 Carya illinoinensis HOM05D004070 ORTHO05D004904 1.9e-234 816.2 677 58.9
Ca_15154_v3 Cicer arietinum L. HOM05D004070 ORTHO05D004904 1.3e-233 813.5 688 58.0
Phvul.001G245900 Phaseolus vulgaris HOM05D004070 ORTHO05D004904 4.8e-233 811.6 710 57.2
PGR044G0681 Punica granatum HOM05D004070 ORTHO05D004904 3.1e-232 808.9 678 57.5
Glyma.18G024300 Glycine max HOM05D004070 ORTHO05D004904 6.9e-232 807.7 687 58.5
Potri.010G184300 Populus trichocarpa HOM05D004070 ORTHO05D004904 6.9e-232 807.7 713 57.4
Lalb_Chr08g0231511 Lupinus albus HOM05D004070 ORTHO05D004904 3.4e-231 805.4 700 56.1
Haze_17272 Corylus avellana HOM05D004070 ORTHO05D004904 4.9e-230 801.6 684 57.7
Glyma.14G056600 Glycine max HOM05D004070 ORTHO05D004904 4.9e-230 801.6 672 59.1
Gohir.A05G332000 Gossypium hirsutum HOM05D004070 ORTHO05D004904 4.2e-229 798.5 631 61.8
Cc02_g06030 Coffea canephora HOM05D004070 ORTHO05D004904 5.4e-229 798.1 591 66.5
VMungo0647G1128 Vigna mungo HOM05D004070 ORTHO05D004904 7.9e-228 794.3 677 58.8
Glyma.02G262300 Glycine max HOM05D004070 ORTHO05D004904 1.8e-227 793.1 685 57.5
Glyma.14G056500 Glycine max HOM05D004070 ORTHO05D004904 2.3e-227 792.7 674 58.6
VMungo1383G0354 Vigna mungo HOM05D004070 ORTHO05D004904 1.1e-226 790.4 691 56.4
ATR0174G011 Amborella trichopoda HOM05D004070 ORTHO05D004904 5.6e-226 788.1 742 54.3
GSVIVG01032751001 Vitis vinifera HOM05D004070 ORTHO05D004904 1.5e-223 780.0 591 63.3
Nn2g10988 Nelumbo nucifera HOM05D004070 ORTHO05D004904 6.4e-222 774.6 680 56.6
CsaV3_5G010510 Cucumis sativus L. HOM05D004070 ORTHO05D004904 1.2e-220 770.4 694 55.9
Gohir.D04G070700 Gossypium hirsutum HOM05D004070 ORTHO05D004904 1.6e-220 770.0 716 54.3
Sed0002479 Sechium edule HOM05D004070 ORTHO05D004904 1.6e-220 770.0 694 56.2
Ciclev10031026m.g Citrus clementina HOM05D004070 ORTHO05D004904 1.9e-218 763.1 618 60.2
ClCG07G004560 Citrullus lanatus HOM05D004070 ORTHO05D004904 3.7e-217 758.8 687 56.5
AT5G05460 Arabidopsis thaliana HOM05D004070 ORTHO05D004904 7.6e-215 751.1 680 53.2
CARHR207790 Cardamine hirsuta HOM05D004070 ORTHO05D004904 1.0e-214 750.7 687 53.1
Carub.0006s0436 Capsella rubella HOM05D004070 ORTHO05D004904 1.1e-213 747.3 678 53.7
AL6G15350 Arabidopsis lyrata HOM05D004070 ORTHO05D004904 1.9e-213 746.5 677 53.2
Sabra10G0141500 Salix brachista HOM05D004070 ORTHO05D004904 2.5e-213 746.1 890 47.4
Sp6g37380 Schrenkiella parvula HOM05D004070 ORTHO05D004904 3.5e-212 742.3 676 52.5
Thhalv10012879m.g Eutrema salsugineum HOM05D004070 ORTHO05D004904 4.6e-212 741.9 677 51.8
A03p02310 Brassica napus HOM05D004070 ORTHO05D004904 3.9e-211 738.8 679 52.9
BcaB01g05761 Brassica carinata HOM05D004070 ORTHO05D004904 5.1e-211 738.4 680 52.8
BcaB01g05950 Brassica carinata HOM05D004070 ORTHO05D004904 1.1e-210 737.3 680 52.6
BolC3t12817H Brassica oleracea HOM05D004070 ORTHO05D004904 1.1e-210 737.3 680 52.6
BraA03t09594Z Brassica rapa HOM05D004070 ORTHO05D004904 1.1e-210 737.3 678 53.2
C03p02630 Brassica napus HOM05D004070 ORTHO05D004904 2.5e-210 736.1 680 52.5
ClCG07G004550 Citrullus lanatus HOM05D004070 ORTHO05D004904 2.5e-210 736.1 681 56.1
CsaV3_5G010500 Cucumis sativus L. HOM05D004070 ORTHO05D004904 9.7e-210 734.2 710 52.8
PGR142G0892 Punica granatum HOM05D004070 ORTHO05D004904 4.5e-207 725.3 682 55.9
CSS0045603 Camellia sinensis var. sinensis HOM05D004070 ORTHO05D004904 5.0e-206 721.8 530 66.4
Sp3g09370 Schrenkiella parvula HOM05D004070 ORTHO05D004904 5.0e-206 721.8 688 51.6
unitig_32.g11775 Utricularia gibba HOM05D004070 ORTHO05D004904 7.9e-204 714.5 713 53.4
Thhalv10020200m.g Eutrema salsugineum HOM05D004070 ORTHO05D004904 1.8e-203 713.4 689 51.5
THA.LOC104816686 Tarenaya hassleriana HOM05D004070 ORTHO05D004904 5.1e-203 711.8 712 51.3
CARHR085620 Cardamine hirsuta HOM05D004070 ORTHO05D004904 8.8e-203 711.1 688 50.9
Aa31LG11G6530 Aethionema arabicum HOM05D004070 ORTHO05D004904 1.5e-202 710.3 676 50.9
Ah.16g103890 Amaranthus hybridus HOM05D004070 ORTHO05D004904 1.5e-202 710.3 677 53.9
Carub.0003s1033 Capsella rubella HOM05D004070 ORTHO05D004904 1.5e-202 710.3 703 50.4
AT3G11040 Arabidopsis thaliana HOM05D004070 ORTHO05D004904 1.7e-201 706.8 704 50.0
arahy.Tifrunner.gnm1.ann1.PDR9Z8 Arachis hypogaea HOM05D004070 ORTHO05D004904 1.7e-201 706.8 739 50.7
Aa31LG3G4060 Aethionema arabicum HOM05D004070 ORTHO05D004904 2.8e-201 706.1 683 50.7
arahy.Tifrunner.gnm1.ann1.DADU25 Arachis hypogaea HOM05D004070 ORTHO05D004904 2.2e-198 696.4 758 48.9
FAN10G1680 Fragaria x ananassa HOM05D004070 ORTHO05D004904 3.8e-198 695.7 660 54.2
BcaB04g21158 Brassica carinata HOM05D004070 ORTHO05D004904 1.4e-197 693.7 706 50.8
AL3G22590 Arabidopsis lyrata HOM05D004070 ORTHO05D004904 1.9e-197 693.3 688 49.4
CANSAT56G2024 Cannabis sativa HOM05D004070 ORTHO05D004904 2.5e-197 693.0 681 53.6
SEGI_36115 Sequoiadendron giganteum HOM05D004070 ORTHO05D004904 6.1e-196 688.3 753 47.7
arahy.Tifrunner.gnm1.ann1.T4ULTV Arachis hypogaea HOM05D004070 ORTHO05D004904 2.0e-194 683.3 669 54.7
BolC1t05338H Brassica oleracea HOM05D004070 ORTHO05D004904 3.7e-193 679.1 720 48.8
Os05g0346500 Oryza sativa ssp. japonica HOM05D004070 ORTHO05D004904 4.5e-191 672.2 675 50.1
MELO3C018386.2 Cucumis melo HOM05D004070 ORTHO05D004904 6.5e-190 668.3 698 51.3
arahy.Tifrunner.gnm1.ann1.L3EDXB Arachis hypogaea HOM05D004070 ORTHO05D004904 9.4e-189 664.5 669 53.5
CDE06G0669 Ceratophyllum demersum HOM05D004070 ORTHO05D004904 1.8e-187 660.2 639 52.1
MELO3C018385.2 Cucumis melo HOM05D004070 ORTHO05D004904 2.4e-184 649.8 698 49.3
BcaC09g48150 Brassica carinata HOM05D004070 ORTHO05D004904 2.5e-181 639.8 590 55.1
COL.COLO4_25787 Corchorus olitorius HOM05D004070 ORTHO05D004904 8.5e-174 614.8 727 47.5
Manes.10G008500 Manihot esculenta HOM05D004070 ORTHO05D004904 3.0e-171 606.3 563 54.5
AL467U10010 Arabidopsis lyrata HOM05D004070 ORTHO05D004904 2.0e-170 603.6 688 45.2
Sc11g0005320 Simmondsia chinensis HOM05D004070 ORTHO05D004904 2.0e-170 603.6 531 56.5
HPP92_006774 Vanilla planifolia HOM05D004070 ORTHO05D004904 4.1e-168 595.9 678 46.9
Zm00001eb347620 Zea mays HOM05D004070 ORTHO05D004904 6.2e-140 502.3 539 47.9
SGA_v2.0_scaffold395G50725 Striga asiatica HOM05D004070 ORTHO05D004904 3.3e-133 479.9 395 60.0
BcaC09g48154 Brassica carinata HOM05D004070 ORTHO05D004904 1.2e-127 461.5 332 63.6
SMO351G0021 Selaginella moellendorffii HOM05D004070 ORTHO05D004904 6.0e-127 459.1 426 50.9
Cpa.g.sc19.130 Carica papaya HOM05D004070 ORTHO05D004904 7.1e-120 435.6 389 54.8
PSO478G2175 Papaver somniferum HOM05D004070 ORTHO05D004904 8.1e-116 422.2 298 64.1
Dinv21779 Davidia involucrata HOM05D004070 ORTHO05D004904 2.2e-105 387.5 231 77.5
CBR_g6382 Chara braunii HOM05D004070 ORTHO05D004904 7.4e-101 372.5 405 45.7
BraA01t04204Z Brassica rapa HOM05D004070 ORTHO05D004904 6.3e-92 342.8 456 42.1
Pp3c4_19160 Physcomitrium patens HOM05D004070 ORTHO05D004904 4.5e-90 336.7 562 35.1
Glyma.02G262251 Glycine max HOM05D004070 ORTHO05D004904 2.2e-89 334.3 403 46.2
AagrBONN_evm.TU.Sc2ySwM_362.570 Anthoceros agrestis HOM05D004070 ORTHO05D004904 1.4e-88 331.6 544 35.5
Cre13.g582250 Chlamydomonas reinhardtii HOM05D004070 ORTHO05D004904 1.3e-84 318.5 311 48.6
PGSC0003DMG400023947 Solanum tuberosum HOM05D004070 ORTHO05D004904 2.2e-84 317.8 322 50.6
Mapoly0073s0082 Marchantia polymorpha HOM05D004070 ORTHO05D004904 8.8e-78 295.8 571 33.1
Glyma.02G262200 Glycine max HOM05D004070 ORTHO05D004904 5.9e-58 229.9 181 61.3
SGA_v2.0_scaffold395G50724 Striga asiatica HOM05D004070 ORTHO05D004904 2.1e-55 221.5 137 73.0
BraA01t04205Z Brassica rapa HOM05D004070 ORTHO05D004904 9.8e-53 212.6 184 56.5
SGA_v2.0_scaffold395G50723 Striga asiatica HOM05D004070 ORTHO05D004904 5.4e-51 206.8 120 76.7
Potri.008G073001 Populus trichocarpa HOM05D004070 ORTHO05D004904 1.2e-47 195.7 211 48.3
BcaB07g33013 Brassica carinata HOM05D004070 ORTHO05D004904 2.8e-47 194.5 229 44.5
Cpa.g.sc19.132 Carica papaya HOM05D004070 ORTHO05D004904 1.0e-46 192.6 250 42.8
MELO3C034437.2 Cucumis melo HOM05D004070 ORTHO05D004904 1.1e-43 182.6 129 63.6
Sopen01g021300 Solanum pennellii HOM05D004070 ORTHO05D004904 1.2e-42 179.1 212 45.3
Atru.chr12.101 Acer truncatum HOM05D004070 ORTHO05D004904 1.1e-40 172.6 177 48.6
AT3G61010 Arabidopsis thaliana HOM05D004070 ORTHO05D004904 2.6e-37 161.4 388 31.4
BcaB04g21152 Brassica carinata HOM05D004070 ORTHO05D004904 1.5e-32 145.6 99 65.7
BcaB04g21155 Brassica carinata HOM05D004070 ORTHO05D004904 1.5e-32 145.6 99 65.7
BcaB04g21156 Brassica carinata HOM05D004070 ORTHO05D004904 1.5e-32 145.6 99 65.7
arahy.Tifrunner.gnm1.ann1.0XTL3F Arachis hypogaea HOM05D004070 ORTHO05D004904 2.1e-26 125.2 163 40.5
Dinv21778 Davidia involucrata HOM05D004070 ORTHO05D004904 1.9e-24 118.6 275 32.7
BraA01t04203Z Brassica rapa HOM05D000053 ORTHO05D000035 5.8e-21 107.1 245 32.2
BolC1t05337H Brassica oleracea HOM05D000053 ORTHO05D000035 1.2e-18 99.4 248 30.2
BcaB03g16457 Brassica carinata HOM05D004070 ORTHO05D032257 3.0e-17 94.7 59 69.5
arahy.Tifrunner.gnm1.ann1.N2R911 Arachis hypogaea HOM05D004070 ORTHO05D004904 2.8e-15 88.2 72 58.3
Sabra08G0054200 Salix brachista HOM05D004070 ORTHO05D004904 3.6e-15 87.8 238 31.1
arahy.Tifrunner.gnm1.ann1.JYP4ZT Arachis hypogaea HOM05D004070 ORTHO05D004904 2.6e-13 81.6 145 35.2
CsaV3_5G010480 Cucumis sativus L. HOM05D004070 ORTHO05D004904 2.2e-12 78.6 205 29.3
BcaB07g33265 Brassica carinata HOM05D004070 ORTHO05D032257 3.8e-12 77.8 48 66.7
BcaB07g33267 Brassica carinata HOM05D004070 ORTHO05D032257 3.8e-12 77.8 48 66.7
Potri.008G072901 Populus trichocarpa HOM05D004070 ORTHO05D004904 4.2e-11 74.3 118 33.9
BcaC06g31359 Brassica carinata HOM05D004070 ORTHO05D000295 1.1e-08 66.2 46 60.9


User provided reference genes

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