Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow3G2013 Salvia bowleyana HOM05D005368 ORTHO05D006417 1.1e-65 253.1 120 100.0
MSTRG.27675 Avicennia marina HOM05D005368 ORTHO05D006417 3.2e-49 198.4 104 88.5
SGA_v2.0_scaffold207G41877 Striga asiatica HOM05D005368 ORTHO05D006417 4.6e-48 194.5 104 85.6
Migut.N01277 Erythranthe guttata HOM05D005368 ORTHO05D006417 3.9e-47 191.4 104 84.6
MSTRG.20040 Avicennia marina HOM05D005368 ORTHO05D006417 2.2e-45 185.7 104 82.7
Cc02_g16910 Coffea canephora HOM05D005368 ORTHO05D006417 1.5e-43 179.5 104 78.8
EL10Ac9g21636 Beta vulgaris HOM05D005368 ORTHO05D006417 2.0e-43 179.1 107 73.8
Duzib132G1204 Durio zibethinus HOM05D005368 ORTHO05D006417 2.0e-43 179.1 101 81.2
BolC1t00400H Brassica oleracea HOM05D005368 ORTHO05D006417 3.4e-43 178.3 104 77.9
BcaB03g11818 Brassica carinata HOM05D005368 ORTHO05D006417 5.9e-43 177.6 102 79.4
A08p16660 Brassica napus HOM05D005368 ORTHO05D006417 5.9e-43 177.6 102 79.4
Gohir.A12G041100 Gossypium hirsutum HOM05D005368 ORTHO05D006417 5.9e-43 177.6 101 81.2
Gohir.D12G031300 Gossypium hirsutum HOM05D005368 ORTHO05D006417 1.0e-42 176.8 101 81.2
Gorai.008G032000 Gossypium raimondii HOM05D005368 ORTHO05D006417 1.0e-42 176.8 101 81.2
Ah.01g006460 Amaranthus hybridus HOM05D005368 ORTHO05D006417 2.2e-42 175.6 104 74.0
AL7G16500 Arabidopsis lyrata HOM05D005368 ORTHO05D006417 2.2e-42 175.6 102 78.4
BcaNung07080 Brassica carinata HOM05D005368 ORTHO05D006417 2.2e-42 175.6 102 78.4
A03p63090 Brassica napus HOM05D005368 ORTHO05D006417 2.2e-42 175.6 102 78.4
BolC7t46501H Brassica oleracea HOM05D005368 ORTHO05D006417 2.2e-42 175.6 102 78.4
BraA03t15384Z Brassica rapa HOM05D005368 ORTHO05D006417 2.2e-42 175.6 102 78.4
CAN.G170.100 Capsicum annuum HOM05D005368 ORTHO05D006417 2.2e-42 175.6 102 78.4
Ah.01g018810 Amaranthus hybridus HOM05D005368 ORTHO05D006417 2.9e-42 175.3 104 75.0
Manes.04G083400 Manihot esculenta HOM05D005368 ORTHO05D006417 2.9e-42 175.3 104 76.9
GSVIVG01024171001 Vitis vinifera HOM05D005368 ORTHO05D006417 2.9e-42 175.3 100 81.0
BcaC01g00883 Brassica carinata HOM05D005368 ORTHO05D006417 3.8e-42 174.9 98 81.6
BcaNung00672 Brassica carinata HOM05D005368 ORTHO05D006417 3.8e-42 174.9 102 77.5
BcaNung00675 Brassica carinata HOM05D005368 ORTHO05D006417 3.8e-42 174.9 102 77.5
A01p03810 Brassica napus HOM05D005368 ORTHO05D006417 3.8e-42 174.9 102 77.5
C01p04120 Brassica napus HOM05D005368 ORTHO05D006417 3.8e-42 174.9 102 77.5
BraA01t00366Z Brassica rapa HOM05D005368 ORTHO05D006417 3.8e-42 174.9 102 77.5
Carub.0007s0559 Capsella rubella HOM05D005368 ORTHO05D006417 3.8e-42 174.9 102 78.4
CARHR243000 Cardamine hirsuta HOM05D005368 ORTHO05D006417 3.8e-42 174.9 102 77.5
TWI31G1415 Tripterygium wilfordii HOM05D005368 ORTHO05D006417 3.8e-42 174.9 105 77.1
ClCG11G003860 Citrullus lanatus HOM05D005368 ORTHO05D006417 5.0e-42 174.5 101 80.2
Sp7g32480 Schrenkiella parvula HOM05D005368 ORTHO05D006417 5.0e-42 174.5 102 78.4
Sed0023703 Sechium edule HOM05D005368 ORTHO05D006417 5.0e-42 174.5 101 78.2
AT4G34700 Arabidopsis thaliana HOM05D005368 ORTHO05D006417 6.5e-42 174.1 102 77.5
C07p60710 Brassica napus HOM05D005368 ORTHO05D006417 6.5e-42 174.1 102 77.5
Hma1.2p1_0032F.1_g020120 Hydrangea macrophylla HOM05D005368 ORTHO05D006417 6.5e-42 174.1 100 80.0
Nitab4.5_0005266g0100 Nicotiana tabacum HOM05D005368 ORTHO05D006417 6.5e-42 174.1 102 77.5
Hund00179 Selenicereus undatus HOM05D005368 ORTHO05D006417 6.5e-42 174.1 104 74.0
Hund00187 Selenicereus undatus HOM05D005368 ORTHO05D006417 6.5e-42 174.1 104 74.0
Thecc.02G075100 Theobroma cacao HOM05D005368 ORTHO05D006417 6.5e-42 174.1 101 79.2
C03p85580 Brassica napus HOM05D005368 ORTHO05D006417 8.5e-42 173.7 98 81.6
Gohir.A03G199300 Gossypium hirsutum HOM05D005368 ORTHO05D006417 8.5e-42 173.7 101 79.2
Gohir.D02G220600 Gossypium hirsutum HOM05D005368 ORTHO05D006417 8.5e-42 173.7 101 79.2
Gorai.005G248500 Gossypium raimondii HOM05D005368 ORTHO05D006417 8.5e-42 173.7 101 79.2
Nn5g29240 Nelumbo nucifera HOM05D005368 ORTHO05D006417 8.5e-42 173.7 100 80.0
Nitab4.5_0010630g0030 Nicotiana tabacum HOM05D005368 ORTHO05D006417 8.5e-42 173.7 103 78.6
Aa31LG2G15810 Aethionema arabicum HOM05D005368 ORTHO05D006417 1.1e-41 173.3 101 75.2
ECA246G1492 Erigeron canadensis HOM05D005368 ORTHO05D006417 1.1e-41 173.3 101 77.2
CiPaw.06G128000 Carya illinoinensis HOM05D005368 ORTHO05D006417 1.4e-41 172.9 105 78.1
AUR62010388 Chenopodium quinoa HOM05D005368 ORTHO05D006417 1.4e-41 172.9 104 73.1
AUR62016830 Chenopodium quinoa HOM05D005368 ORTHO05D006417 1.4e-41 172.9 104 73.1
COL.COLO4_26045 Corchorus olitorius HOM05D005368 ORTHO05D006417 1.4e-41 172.9 102 79.4
RcHm_v2.0_Chr6g0267931 Rosa chinensis HOM05D005368 ORTHO05D006417 1.4e-41 172.9 102 75.5
FvH4_2g10430 Fragaria vesca HOM05D005368 ORTHO05D006417 1.9e-41 172.6 102 75.5
FAN20G0372 Fragaria x ananassa HOM05D005368 ORTHO05D006417 1.9e-41 172.6 102 75.5
FAN24G2358 Fragaria x ananassa HOM05D005368 ORTHO05D006417 1.9e-41 172.6 102 75.5
FAN27G2088 Fragaria x ananassa HOM05D005368 ORTHO05D006417 1.9e-41 172.6 102 75.5
HanXRQChr15g0478311 Helianthus annuus HOM05D005368 ORTHO05D006417 1.9e-41 172.6 99 79.8
Oeu046129.2 Olea europaea HOM05D005368 ORTHO05D006417 1.9e-41 172.6 123 69.1
CSS0039837 Camellia sinensis var. sinensis HOM05D005368 ORTHO05D006417 2.5e-41 172.2 102 76.5
Duzib052G0771 Durio zibethinus HOM05D005368 ORTHO05D006417 2.5e-41 172.2 101 78.2
Lsat_1_v5_gn_3_44180 Lactuca sativa HOM05D005368 ORTHO05D006417 2.5e-41 172.2 98 80.6
Nitab4.5_0001317g0060 Nicotiana tabacum HOM05D005368 ORTHO05D006417 2.5e-41 172.2 102 77.5
Sed0006755 Sechium edule HOM05D005368 ORTHO05D006417 2.5e-41 172.2 102 76.5
MELO3C023357.2 Cucumis melo HOM05D005368 ORTHO05D006417 4.2e-41 171.4 100 80.0
TWI75G0748 Tripterygium wilfordii HOM05D005368 ORTHO05D006417 4.2e-41 171.4 105 76.2
CiPaw.05G073300 Carya illinoinensis HOM05D005368 ORTHO05D006417 5.5e-41 171.0 105 76.2
CSS0032904 Camellia sinensis var. sinensis HOM05D005368 ORTHO05D006417 7.2e-41 170.6 102 75.5
Ciclev10029601m.g Citrus clementina HOM05D005368 ORTHO05D006417 7.2e-41 170.6 103 74.8
FAN15G3179 Fragaria x ananassa HOM05D005368 ORTHO05D006417 7.2e-41 170.6 102 75.5
Potri.009G124600 Populus trichocarpa HOM05D005368 ORTHO05D006417 9.4e-41 170.2 104 76.0
PGR042G2956 Punica granatum HOM05D005368 ORTHO05D006417 9.4e-41 170.2 103 74.8
CsaV3_2G015290 Cucumis sativus L. HOM05D005368 ORTHO05D006417 1.2e-40 169.9 102 76.5
MD10G1063100 Malus domestica HOM05D005368 ORTHO05D006417 1.2e-40 169.9 102 76.5
Sc08g0000900 Simmondsia chinensis HOM05D005368 ORTHO05D006417 1.2e-40 169.9 103 72.8
CANSAT11G1177 Cannabis sativa HOM05D005368 ORTHO05D006417 1.6e-40 169.5 101 77.2
MD00G1086200 Malus domestica HOM05D005368 ORTHO05D006417 1.6e-40 169.5 102 75.5
Hund06283 Selenicereus undatus HOM05D005368 ORTHO05D006417 2.1e-40 169.1 104 71.2
Solyc01g110390.2 Solanum lycopersicum HOM05D005368 ORTHO05D006417 2.1e-40 169.1 102 73.5
Peaxi162Scf00016g00038 Petunia axillaris HOM05D005368 ORTHO05D006417 2.7e-40 168.7 102 74.5
Prupe.8G083900 Prunus persica HOM05D005368 ORTHO05D006417 2.7e-40 168.7 103 74.8
TWI79G1074 Tripterygium wilfordii HOM05D005368 ORTHO05D006417 2.7e-40 168.7 105 73.3
Ca_15334_v3 Cicer arietinum L. HOM05D005368 ORTHO05D006417 3.6e-40 168.3 104 74.0
Lalb_Chr11g0061301 Lupinus albus HOM05D005368 ORTHO05D006417 3.6e-40 168.3 105 74.3
Glyma.04G008100 Glycine max HOM05D005368 ORTHO05D006417 4.7e-40 167.9 101 77.2
Atru.chr5.3143 Acer truncatum HOM05D005368 ORTHO05D006417 6.1e-40 167.5 103 73.8
Dinv23453 Davidia involucrata HOM05D005368 ORTHO05D006417 7.9e-40 167.2 99 77.8
Manes.11G081900 Manihot esculenta HOM05D005368 ORTHO05D006417 7.9e-40 167.2 104 74.0
Cfa005111 Carpinus fangiana HOM05D005368 ORTHO05D006417 1.4e-39 166.4 105 74.3
Glyma.06G007900 Glycine max HOM05D005368 ORTHO05D006417 1.4e-39 166.4 101 76.2
VMungo1309G2922 Vigna mungo HOM05D005368 ORTHO05D006417 3.0e-39 165.2 101 74.3
Haze_02245 Corylus avellana HOM05D005368 ORTHO05D006417 3.9e-39 164.9 105 74.3
Gorai.002G149100 Gossypium raimondii HOM05D005368 ORTHO05D006417 3.9e-39 164.9 100 76.0
Lalb_Chr08g0246711 Lupinus albus HOM05D005368 ORTHO05D006417 3.9e-39 164.9 101 73.3
MBI18_g13600_MAGBIO Magnolia biondii HOM05D005368 ORTHO05D006417 3.9e-39 164.9 104 72.1
THA.LOC104819629 Tarenaya hassleriana HOM05D005368 ORTHO05D006417 3.9e-39 164.9 101 72.3
TAR376G0297 Trochodendron aralioides HOM05D005368 ORTHO05D006417 5.1e-39 164.5 100 76.0
CDE02G1335 Ceratophyllum demersum HOM05D000240 ORTHO05D001140 6.7e-39 164.1 102 73.5
Potri.004G163000 Populus trichocarpa HOM05D005368 ORTHO05D006417 6.7e-39 164.1 103 72.8
Medtr3g117550 Medicago truncatula HOM05D005368 ORTHO05D006417 8.8e-39 163.7 105 72.4
Haze_02248 Corylus avellana HOM05D005368 ORTHO05D006417 1.5e-38 162.9 101 73.3
HPP92_012929 Vanilla planifolia HOM05D005368 ORTHO05D006417 2.6e-38 162.2 104 71.2
Gohir.D13G096825 Gossypium hirsutum HOM05D005368 ORTHO05D006417 3.3e-38 161.8 100 75.0
Aqoxy5G01478 Aquilegia oxysepala HOM05D005368 ORTHO05D006417 4.4e-38 161.4 100 74.0
Lj3g0011506 Lotus japonicus HOM05D005368 ORTHO05D006417 4.4e-38 161.4 104 73.1
Psat5g003920 Pisum sativum HOM05D005368 ORTHO05D006417 4.4e-38 161.4 104 71.2
BraA08t33631Z Brassica rapa HOM05D005368 ORTHO05D006417 1.3e-37 159.8 137 59.1
ATR0149G005 Amborella trichopoda HOM05D005368 ORTHO05D006417 2.8e-37 158.7 106 70.8
PSO210G0115 Papaver somniferum HOM05D005368 ORTHO05D006417 8.2e-37 157.1 98 73.5
PSO170G4570 Papaver somniferum HOM05D005368 ORTHO05D006417 1.1e-36 156.8 98 72.4
Phvul.009G002900 Phaseolus vulgaris HOM05D005368 ORTHO05D006417 1.8e-36 156.0 101 70.3
Zm00001eb227940 Zea mays HOM05D005368 ORTHO05D006417 2.4e-36 155.6 101 70.3
Os06g0714100 Oryza sativa ssp. japonica HOM05D005368 ORTHO05D006417 3.5e-35 151.8 101 69.3
QL11p046417 Quercus lobata HOM05D005368 ORTHO05D006417 3.5e-35 151.8 122 61.5
MD00G1117500 Malus domestica HOM05D005368 ORTHO05D006417 1.9e-33 146.0 102 67.6
CDE04G1205 Ceratophyllum demersum HOM05D005368 ORTHO05D006417 6.1e-32 141.0 88 73.9
SEGI_21378 Sequoiadendron giganteum HOM05D005368 ORTHO05D006417 1.1e-30 136.7 104 62.5
PGSC0003DMG400005571 Solanum tuberosum HOM05D005368 ORTHO05D006417 2.0e-30 136.0 82 74.4
TPR.G32174 Trifolium pratense HOM05D005368 ORTHO05D006417 3.3e-30 135.2 169 46.7
Nitab4.5_0005932g0060 Nicotiana tabacum HOM05D005368 ORTHO05D006417 6.3e-29 131.0 102 64.7
Mapoly0002s0197 Marchantia polymorpha HOM05D005368 ORTHO05D006417 2.6e-27 125.6 107 56.1
Pp3c6_19130 Physcomitrium patens HOM05D005368 ORTHO05D006417 2.9e-26 122.1 103 51.5
Actinidia02246 Actinidia chinensis HOM05D005368 ORTHO05D006417 1.1e-25 120.2 103 60.2
Thhalv10026594m.g Eutrema salsugineum HOM05D005368 ORTHO05D006417 3.6e-24 115.2 102 56.9
AagrBONN_evm.TU.Sc2ySwM_368.1500 Anthoceros agrestis HOM05D005368 ORTHO05D006417 8.8e-23 110.5 96 51.0
Gohir.A13G090800 Gossypium hirsutum HOM05D005368 ORTHO05D006417 9.7e-22 107.1 81 65.4
Lj5C189G13 Lonicera japonica HOM05D006147 ORTHO05D007501 3.7e-21 105.1 62 74.2
Migut.B00174 Erythranthe guttata HOM05D005368 ORTHO05D006417 1.8e-20 102.8 57 86.0
SMO223G0026 Selaginella moellendorffii HOM05D000032 ORTHO05D004142 7.0e-20 100.9 100 48.0
SMO159G0001 Selaginella moellendorffii HOM05D005368 ORTHO05D006417 9.1e-20 100.5 100 47.0
unitig_60.g25866 Utricularia gibba HOM05D005368 ORTHO05D006417 9.1e-20 100.5 111 48.6
CBR_g22898 Chara braunii HOM05D000019 ORTHO05D000048 1.3e-18 96.7 103 45.6
BolC3t20846H Brassica oleracea HOM05D005368 ORTHO05D006417 5.0e-18 94.7 80 61.2
HanXRQChr17g0544121 Helianthus annuus HOM05D005368 ORTHO05D006417 6.5e-18 94.4 52 88.5
Oeu020711.1 Olea europaea HOM05D005368 ORTHO05D006417 6.5e-18 94.4 145 39.3
MCO15G169 Micromonas commoda HOM05D005368 ORTHO05D006417 8.0e-16 87.4 86 52.3
HanXRQChr10g0292781 Helianthus annuus HOM05D005368 ORTHO05D006417 4.0e-15 85.1 47 74.5
Sopen01g052540 Solanum pennellii HOM05D005368 ORTHO05D006417 1.2e-14 83.6 49 69.4
Eucgr.G01730 Eucalyptus grandis HOM05D005368 ORTHO05D006417 3.4e-14 82.0 47 70.2
BcaNung04613 Brassica carinata HOM05D005368 ORTHO05D006417 7.5e-14 80.9 55 67.3
MD05G1026100 Malus domestica HOM05D005333 ORTHO05D005776 7.5e-14 80.9 55 74.5
BcaNung02377 Brassica carinata HOM05D005368 ORTHO05D006417 1.6e-11 73.2 46 69.6
CSS0005721 Camellia sinensis var. sinensis HOM05D005368 ORTHO05D006417 1.6e-11 73.2 47 63.8
Cre11.g467668 Chlamydomonas reinhardtii HOM05D005368 ORTHO05D006417 1.6e-08 63.2 93 38.7


User provided reference genes

Program Settings