Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow3G1900 Salvia bowleyana HOM05D003660 ORTHO05D003415 1.3e-43 179.5 101 100.0
Solyc11g068760.2 Solanum lycopersicum HOM05D003660 ORTHO05D003415 9.0e-29 130.2 108 67.6
Sopen11g027470 Solanum pennellii HOM05D003660 ORTHO05D003415 9.0e-29 130.2 108 67.6
Peaxi162Scf00224g00520 Petunia axillaris HOM05D003660 ORTHO05D003415 1.2e-28 129.8 108 68.5
CSS0013947 Camellia sinensis var. sinensis HOM05D003660 ORTHO05D003415 2.6e-28 128.6 109 70.6
MSTRG.17695 Avicennia marina HOM05D003660 ORTHO05D003415 5.9e-28 127.5 109 68.8
Nn6g34777 Nelumbo nucifera HOM05D003660 ORTHO05D003415 5.9e-28 127.5 109 67.0
Hund18786 Selenicereus undatus HOM05D003660 ORTHO05D003415 1.3e-27 126.3 109 67.0
Thecc.09G277300 Theobroma cacao HOM05D003660 ORTHO05D003415 1.7e-27 125.9 109 67.9
Actinidia35475 Actinidia chinensis HOM05D003660 ORTHO05D003415 5.0e-27 124.4 109 66.1
Sc12g0004740 Simmondsia chinensis HOM05D003660 ORTHO05D003415 6.5e-27 124.0 109 65.1
VMungo1080G1056 Vigna mungo HOM05D003660 ORTHO05D003415 3.2e-26 121.7 109 66.1
Manes.04G000300 Manihot esculenta HOM05D003660 ORTHO05D003415 7.2e-26 120.6 109 65.1
Ciclev10029624m.g Citrus clementina HOM05D003660 ORTHO05D003415 1.2e-25 119.8 109 64.2
Rhsim01G0202600 Rhododendron simsii HOM05D003660 ORTHO05D003415 1.2e-25 119.8 109 65.1
Cc01_g08660 Coffea canephora HOM05D003660 ORTHO05D003415 1.6e-25 119.4 102 69.6
Lj3g0024971 Lotus japonicus HOM05D003660 ORTHO05D003415 1.6e-25 119.4 109 66.1
Nitab4.5_0001135g0080 Nicotiana tabacum HOM05D003660 ORTHO05D003415 1.6e-25 119.4 109 64.2
TAR633G2283 Trochodendron aralioides HOM05D003660 ORTHO05D003415 1.6e-25 119.4 109 62.4
vmacro14331 Vaccinium macrocarpon HOM05D003660 ORTHO05D003415 2.7e-25 118.6 109 65.1
Glyma.12G186952 Glycine max HOM05D003660 ORTHO05D003415 4.6e-25 117.9 109 64.2
Potri.004G200200 Populus trichocarpa HOM05D003660 ORTHO05D003415 4.6e-25 117.9 109 66.1
MBI01_g04518_MAGBIO Magnolia biondii HOM05D003660 ORTHO05D003415 7.9e-25 117.1 109 65.1
Phvul.005G121700 Phaseolus vulgaris HOM05D003660 ORTHO05D003415 1.0e-24 116.7 109 64.2
Glyma.13G314500 Glycine max HOM05D003660 ORTHO05D003415 1.4e-24 116.3 109 63.3
Medtr2g086880 Medicago truncatula HOM05D000010 ORTHO05D005236 1.4e-24 116.3 109 61.5
TAR623G0029 Trochodendron aralioides HOM05D003660 ORTHO05D003415 1.4e-24 116.3 109 63.3
Hund20939 Selenicereus undatus HOM05D003660 ORTHO05D003415 1.8e-24 115.9 109 62.4
TAR636G3190 Trochodendron aralioides HOM05D003660 ORTHO05D003415 1.8e-24 115.9 109 61.5
CiPaw.14G096800 Carya illinoinensis HOM05D003660 ORTHO05D003415 2.3e-24 115.5 109 64.2
Gorai.006G113800 Gossypium raimondii HOM05D003660 ORTHO05D003415 2.3e-24 115.5 109 63.3
MSTRG.12378 Avicennia marina HOM05D003660 ORTHO05D003415 3.0e-24 115.2 109 63.3
Duzib170G1097 Durio zibethinus HOM05D000010 ORTHO05D005236 3.0e-24 115.2 109 63.3
Migut.D02421 Erythranthe guttata HOM05D003660 ORTHO05D003415 3.0e-24 115.2 109 64.2
Gohir.A09G097300 Gossypium hirsutum HOM05D003660 ORTHO05D003415 3.9e-24 114.8 109 62.4
Migut.D02405 Erythranthe guttata HOM05D003660 ORTHO05D003415 5.1e-24 114.4 109 64.2
COL.COLO4_04567 Corchorus olitorius HOM05D003660 ORTHO05D003415 8.8e-24 113.6 85 72.9
Gohir.D09G097100 Gossypium hirsutum HOM05D003660 ORTHO05D003415 8.8e-24 113.6 109 62.4
MD11G1171800 Malus domestica HOM05D003660 ORTHO05D003415 1.1e-23 113.2 109 62.4
Hma1.2p1_1178F.1_g264370 Hydrangea macrophylla HOM05D003660 ORTHO05D003415 2.0e-23 112.5 109 63.3
Hma1.2p1_2789F.1_g328565 Hydrangea macrophylla HOM05D003660 ORTHO05D003415 2.0e-23 112.5 109 63.3
MD03G1151200 Malus domestica HOM05D003660 ORTHO05D003415 2.0e-23 112.5 109 61.5
PSO339G2942 Papaver somniferum HOM05D003660 ORTHO05D003415 2.0e-23 112.5 109 59.6
PSO801G0667 Papaver somniferum HOM05D003660 ORTHO05D003415 2.0e-23 112.5 109 59.6
unitig_22.g6156 Utricularia gibba HOM05D003660 ORTHO05D003415 2.5e-23 112.1 105 64.8
Atru.chr3.3157 Acer truncatum HOM05D003660 ORTHO05D003415 3.3e-23 111.7 109 58.7
ClCG02G022340 Citrullus lanatus HOM05D003660 ORTHO05D003415 5.7e-23 110.9 107 62.6
Gohir.A05G078900 Gossypium hirsutum HOM05D003660 ORTHO05D003415 9.7e-23 110.2 108 63.0
Gorai.009G083400 Gossypium raimondii HOM05D003660 ORTHO05D003415 9.7e-23 110.2 108 63.0
Lalb_Chr14g0376021 Lupinus albus HOM05D003660 ORTHO05D003415 9.7e-23 110.2 110 59.1
Prupe.6G138900 Prunus persica HOM05D003660 ORTHO05D003415 1.7e-22 109.4 85 70.6
RcHm_v2.0_Chr5g0047201 Rosa chinensis HOM05D003660 ORTHO05D003415 2.8e-22 108.6 109 59.6
MELO3C014510.2 Cucumis melo HOM05D000010 ORTHO05D005236 3.7e-22 108.2 107 60.7
Sabra04G0135300 Salix brachista HOM05D003660 ORTHO05D003415 3.7e-22 108.2 125 57.6
FvH4_3g25870 Fragaria vesca HOM05D003660 ORTHO05D003415 4.8e-22 107.8 85 68.2
FAN21G0895 Fragaria x ananassa HOM05D003660 ORTHO05D003415 4.8e-22 107.8 85 68.2
FAN25G0104 Fragaria x ananassa HOM05D003660 ORTHO05D003415 4.8e-22 107.8 85 68.2
MBI17_g39787_MAGBIO Magnolia biondii HOM05D003660 ORTHO05D003415 4.8e-22 107.8 109 59.6
Oeu035577.1 Olea europaea HOM05D003660 ORTHO05D003415 4.8e-22 107.8 109 60.6
CsaV3_6G038470 Cucumis sativus L. HOM05D003660 ORTHO05D003415 8.2e-22 107.1 107 59.8
HPP92_009784 Vanilla planifolia HOM05D003660 ORTHO05D003415 8.2e-22 107.1 109 56.0
Manes.08G030600 Manihot esculenta HOM05D003660 ORTHO05D003415 3.1e-21 105.1 107 57.9
Eucgr.K02602 Eucalyptus grandis HOM05D003660 ORTHO05D003415 5.3e-21 104.4 105 60.0
Psat7g186360 Pisum sativum HOM05D003660 ORTHO05D003415 5.3e-21 104.4 83 67.5
PGR004G0692 Punica granatum HOM05D003660 ORTHO05D003415 5.3e-21 104.4 108 57.4
SGA_v2.0_scaffold7G03991 Striga asiatica HOM05D003660 ORTHO05D003415 5.3e-21 104.4 85 67.1
Aqoxy4G02700 Aquilegia oxysepala HOM05D003660 ORTHO05D003415 1.2e-20 103.2 109 56.9
CiPaw.10G014700 Carya illinoinensis HOM05D003660 ORTHO05D003415 2.0e-20 102.4 109 58.7
THA.LOC104810930 Tarenaya hassleriana HOM05D003660 ORTHO05D003415 2.0e-20 102.4 110 55.5
Aa31LG1G13260 Aethionema arabicum HOM05D003660 ORTHO05D003415 2.6e-20 102.1 110 54.5
Cpa.g.sc195.36 Carica papaya HOM05D003660 ORTHO05D003415 2.6e-20 102.1 83 69.9
Aqoxy2G01022 Aquilegia oxysepala HOM05D003660 ORTHO05D003415 3.4e-20 101.7 109 58.7
THA.LOC104799557 Tarenaya hassleriana HOM05D003660 ORTHO05D003415 3.4e-20 101.7 85 65.9
Aa31LG4G13780 Aethionema arabicum HOM05D003660 ORTHO05D003415 4.5e-20 101.3 107 58.9
Lalb_Chr19g0136331 Lupinus albus HOM05D003660 ORTHO05D003415 4.5e-20 101.3 85 65.9
CARHR104590 Cardamine hirsuta HOM05D003660 ORTHO05D003415 5.9e-20 100.9 108 55.6
CANSAT64G0684 Cannabis sativa HOM05D003660 ORTHO05D003415 7.7e-20 100.5 109 56.9
CANSAT54G1844 Cannabis sativa HOM05D003660 ORTHO05D003415 1.0e-19 100.1 86 66.3
Gohir.A09G137200 Gossypium hirsutum HOM05D003660 ORTHO05D003415 1.0e-19 100.1 109 54.1
Gorai.006G151200 Gossypium raimondii HOM05D003660 ORTHO05D003415 1.0e-19 100.1 109 54.1
CDE04G3260 Ceratophyllum demersum HOM05D003660 ORTHO05D003415 1.3e-19 99.8 88 62.5
Thhalv10010953m.g Eutrema salsugineum HOM05D003660 ORTHO05D003415 1.3e-19 99.8 109 55.0
SGA_v2.0_scaffold295G47504 Striga asiatica HOM05D003660 ORTHO05D003415 1.3e-19 99.8 108 56.5
A06p22070 Brassica napus HOM05D003660 ORTHO05D003415 1.7e-19 99.4 85 65.9
Thecc.05G099700 Theobroma cacao HOM05D003660 ORTHO05D003415 2.2e-19 99.0 109 54.1
AL6G33280 Arabidopsis lyrata HOM05D003660 ORTHO05D003415 2.9e-19 98.6 110 56.4
AT5G22280 Arabidopsis thaliana HOM05D003660 ORTHO05D003415 2.9e-19 98.6 99 57.6
Carub.0005s1000 Capsella rubella HOM05D003660 ORTHO05D003415 2.9e-19 98.6 108 56.5
ATR0772G050 Amborella trichopoda HOM05D003660 ORTHO05D003415 5.0e-19 97.8 75 70.7
AT3G44280 Arabidopsis thaliana HOM05D003660 ORTHO05D003415 5.0e-19 97.8 108 56.5
AL5G22410 Arabidopsis lyrata HOM05D003660 ORTHO05D003415 6.5e-19 97.4 108 56.5
Sp6g22960 Schrenkiella parvula HOM05D003660 ORTHO05D003415 6.5e-19 97.4 85 63.5
Gohir.A11G318200 Gossypium hirsutum HOM05D003660 ORTHO05D003415 8.5e-19 97.1 109 55.0
Gohir.D11G337400 Gossypium hirsutum HOM05D003660 ORTHO05D003415 8.5e-19 97.1 109 55.0
Gorai.007G367400 Gossypium raimondii HOM05D003660 ORTHO05D003415 8.5e-19 97.1 109 55.0
BNapus_Darmor_BZH_scaffold_38p00770 Brassica napus HOM05D003660 ORTHO05D003415 1.1e-18 96.7 110 55.5
Carub.0006s2002 Capsella rubella HOM05D003660 ORTHO05D003415 1.1e-18 96.7 99 57.6
Potri.006G206100 Populus trichocarpa HOM05D003660 ORTHO05D003415 1.1e-18 96.7 112 52.7
MD14G1033900 Malus domestica HOM05D003660 ORTHO05D003415 1.9e-18 95.9 109 56.0
RcHm_v2.0_Chr3g0475141 Rosa chinensis HOM05D003660 ORTHO05D003415 2.5e-18 95.5 109 57.8
BcaC01g06594 Brassica carinata HOM05D003660 ORTHO05D003415 3.2e-18 95.1 111 55.0
C03p12270 Brassica napus HOM05D003660 ORTHO05D003415 3.2e-18 95.1 111 55.0
Duzib093G1675 Durio zibethinus HOM05D003660 ORTHO05D003415 3.2e-18 95.1 109 51.4
Eucgr.J00533 Eucalyptus grandis HOM05D003660 ORTHO05D003415 4.2e-18 94.7 108 53.7
arahy.Tifrunner.gnm1.ann1.PLL1TV Arachis hypogaea HOM05D003660 ORTHO05D003415 5.5e-18 94.4 90 60.0
BraA06t25297Z Brassica rapa HOM05D003660 ORTHO05D003415 5.5e-18 94.4 87 64.4
BcaC03g13871 Brassica carinata HOM05D003660 ORTHO05D003415 7.2e-18 94.0 110 54.5
Thhalv10015076m.g Eutrema salsugineum HOM05D003660 ORTHO05D003415 7.2e-18 94.0 110 54.5
Zm00001eb304510 Zea mays HOM05D003660 ORTHO05D003415 7.2e-18 94.0 106 50.0
BcaB05g22739 Brassica carinata HOM05D003660 ORTHO05D003415 9.4e-18 93.6 99 54.5
BcaB01g04718 Brassica carinata HOM05D003660 ORTHO05D003415 1.2e-17 93.2 111 54.1
A03p10660 Brassica napus HOM05D003660 ORTHO05D003415 1.2e-17 93.2 111 54.1
C03p69380 Brassica napus HOM05D003660 ORTHO05D003415 1.2e-17 93.2 85 63.5
BolC2t07146H Brassica oleracea HOM05D003660 ORTHO05D003415 1.2e-17 93.2 110 53.6
BraA03t10378Z Brassica rapa HOM05D003660 ORTHO05D003415 1.2e-17 93.2 111 54.1
ClCG10G018570 Citrullus lanatus HOM05D003660 ORTHO05D003415 1.2e-17 93.2 109 51.4
Lj3g0015124 Lotus japonicus HOM05D003660 ORTHO05D003415 1.6e-17 92.8 99 53.5
MD12G1033100 Malus domestica HOM05D003660 ORTHO05D003415 1.6e-17 92.8 109 56.9
C02p10760 Brassica napus HOM05D003660 ORTHO05D003415 2.1e-17 92.4 110 53.6
FAN11G1383 Fragaria x ananassa HOM05D003660 ORTHO05D003415 2.1e-17 92.4 74 64.9
Sed0020241 Sechium edule HOM05D003660 ORTHO05D003415 2.1e-17 92.4 109 51.4
Gohir.D05G081800 Gossypium hirsutum HOM05D003660 ORTHO05D003415 2.7e-17 92.0 108 56.5
Carub.0333s0001 Capsella rubella HOM05D003660 ORTHO05D003415 4.7e-17 91.3 77 68.8
Os02g0536100 Oryza sativa ssp. japonica HOM05D003660 ORTHO05D003415 6.1e-17 90.9 109 52.3
Potri.016G073500 Populus trichocarpa HOM05D003660 ORTHO05D003415 7.9e-17 90.5 85 61.2
Prupe.7G099100 Prunus persica HOM05D003660 ORTHO05D003415 7.9e-17 90.5 109 55.0
Actinidia06171 Actinidia chinensis HOM05D003660 ORTHO05D003415 1.4e-16 89.7 80 62.5
Lsat_1_v5_gn_1_57561 Lactuca sativa HOM05D003660 ORTHO05D003415 1.8e-16 89.4 101 56.4
Ca_01643_v3 Cicer arietinum L. HOM05D000010 ORTHO05D005236 2.3e-16 89.0 102 52.0
ECA248G2122 Erigeron canadensis HOM05D003660 ORTHO05D003415 3.0e-16 88.6 101 56.4
Migut.N02469 Erythranthe guttata HOM05D003660 ORTHO05D003415 3.0e-16 88.6 85 58.8
TWI31G1256 Tripterygium wilfordii HOM05D003660 ORTHO05D003415 3.9e-16 88.2 107 54.2
Zm00001eb242920 Zea mays HOM05D003660 ORTHO05D003415 5.1e-16 87.8 109 49.5
Os03g0836500 Oryza sativa ssp. japonica HOM05D003660 ORTHO05D003415 1.1e-15 86.7 106 50.0
SEGI_28618 Sequoiadendron giganteum HOM05D003660 ORTHO05D003415 1.1e-15 86.7 83 60.2
BcaB08g36812 Brassica carinata HOM05D003660 ORTHO05D003415 1.5e-15 86.3 99 52.5
arahy.Tifrunner.gnm1.ann1.W33SWH Arachis hypogaea HOM05D003660 ORTHO05D003415 2.0e-15 85.9 100 54.0
HanXRQChr01g0024911 Helianthus annuus HOM05D003660 ORTHO05D003415 2.6e-15 85.5 101 54.5
Sabra06G0159000 Salix brachista HOM05D003660 ORTHO05D003415 3.3e-15 85.1 129 46.5
Os07g0250300 Oryza sativa ssp. japonica HOM05D003660 ORTHO05D003415 4.4e-15 84.7 107 49.5
Zm00001eb211110 Zea mays HOM05D003660 ORTHO05D003415 5.7e-15 84.3 102 49.0
Dinv22800 Davidia involucrata HOM05D003660 ORTHO05D003415 7.4e-15 84.0 79 62.0
TWI77G0680 Tripterygium wilfordii HOM05D003660 ORTHO05D003415 2.8e-14 82.0 118 48.3
BcaC01g02028 Brassica carinata HOM05D003660 ORTHO05D003415 8.2e-14 80.5 107 50.5
BolC3t19199H Brassica oleracea HOM05D003660 ORTHO05D003415 8.2e-14 80.5 107 50.5
SEGI_04697 Sequoiadendron giganteum HOM05D003660 ORTHO05D003415 2.4e-13 79.0 83 53.0
FAN05G5646 Fragaria x ananassa HOM05D003660 ORTHO05D003415 3.1e-13 78.6 89 58.4
TWI74G0792 Tripterygium wilfordii HOM05D003660 ORTHO05D003415 4.1e-13 78.2 81 56.8
BcaB05g22254 Brassica carinata HOM05D003660 ORTHO05D003415 5.3e-13 77.8 88 54.5
FAN05G5661 Fragaria x ananassa HOM05D003660 ORTHO05D003415 5.3e-13 77.8 89 58.4
Rhsim03G0067700 Rhododendron simsii HOM05D003660 ORTHO05D003415 5.3e-13 77.8 111 51.4
Sabra16G0076300 Salix brachista HOM05D003660 ORTHO05D003415 5.3e-13 77.8 93 53.8
MELO3C009511.2 Cucumis melo HOM05D003660 ORTHO05D003415 9.1e-13 77.0 109 45.9
Carub.0006s0515 Capsella rubella HOM05D008756 ORTHO05D003415 1.2e-12 76.6 100 46.0
PGR119G0448 Punica granatum HOM05D003660 ORTHO05D003415 2.0e-12 75.9 109 48.6
FAN14G4527 Fragaria x ananassa HOM05D003660 ORTHO05D003415 2.6e-12 75.5 89 53.9
Sp6g36600 Schrenkiella parvula HOM05D008756 ORTHO05D003415 2.6e-12 75.5 86 47.7
FAN02G2975 Fragaria x ananassa HOM05D003660 ORTHO05D003415 4.5e-12 74.7 89 56.2
THA.LOC104826814 Tarenaya hassleriana HOM05D003660 ORTHO05D003415 4.5e-12 74.7 97 44.3
CARHR206980 Cardamine hirsuta HOM05D008756 ORTHO05D003415 5.9e-12 74.3 101 45.5
HanXRQChr02g0053831 Helianthus annuus HOM05D003660 ORTHO05D003415 5.9e-12 74.3 83 53.0
ECA233G4994 Erigeron canadensis HOM05D003660 ORTHO05D003415 7.7e-12 73.9 102 44.1
AT5G06265 Arabidopsis thaliana HOM05D008756 ORTHO05D003415 1.0e-11 73.6 102 45.1
unitig_8.g2976 Utricularia gibba HOM05D003660 ORTHO05D003415 1.3e-11 73.2 95 49.5
AL6G16290 Arabidopsis lyrata HOM05D008756 ORTHO05D003415 1.7e-11 72.8 101 42.6
SGA_v2.0_scaffold177G39452 Striga asiatica HOM05D003660 ORTHO05D003415 2.9e-11 72.0 107 45.8
Aa31sc52G60 Aethionema arabicum HOM05D008756 ORTHO05D003415 6.5e-11 70.9 83 49.4
QL01p011704 Quercus lobata HOM05D003660 ORTHO05D003415 6.5e-11 70.9 48 77.1
CsaV3_3G037680 Cucumis sativus L. HOM05D003660 ORTHO05D003415 1.5e-10 69.7 109 43.1
TPR.G36105 Trifolium pratense HOM05D003660 ORTHO05D003415 2.5e-10 68.9 53 67.9
GSVIVG01036067001 Vitis vinifera HOM05D003660 ORTHO05D003415 3.2e-10 68.6 109 45.9
Ca_19453_v3 Cicer arietinum L. HOM05D003660 ORTHO05D003415 4.2e-10 68.2 52 67.3
DCAR_020727 Daucus carota HOM05D003660 ORTHO05D003415 1.2e-09 66.6 135 37.0
TPR.G26429 Trifolium pratense HOM05D003660 ORTHO05D003415 1.2e-09 66.6 53 64.2
BolC3t13700H Brassica oleracea HOM05D003660 ORTHO05D003415 2.1e-09 65.9 132 37.9
TPR.G23220 Trifolium pratense HOM05D003660 ORTHO05D003415 3.6e-09 65.1 53 66.0
BcaC06g32337 Brassica carinata HOM05D008756 ORTHO05D003415 4.7e-09 64.7 86 41.9
EL10Ac7g16326 Beta vulgaris HOM05D003660 ORTHO05D003415 6.1e-09 64.3 108 43.5
BraA02t05648Z Brassica rapa HOM05D003660 ORTHO05D003415 1.0e-08 63.5 53 64.2
BcaC06g32356 Brassica carinata HOM05D008756 ORTHO05D003415 1.8e-08 62.8 86 40.7
BcaB08g37469 Brassica carinata HOM05D003660 ORTHO05D003415 2.3e-08 62.4 82 48.8
BolC9t59818H Brassica oleracea HOM05D008756 ORTHO05D003415 4.0e-08 61.6 86 40.7
Sp5g16990 Schrenkiella parvula HOM05D003660 ORTHO05D003415 6.7e-08 60.8 53 62.3
TPR.G4509 Trifolium pratense HOM05D003660 ORTHO05D003415 6.7e-08 60.8 68 54.4
QL07p037620 Quercus lobata HOM05D003660 ORTHO05D003415 1.1e-07 60.1 56 55.4
Pp3c9_5580 Physcomitrium patens HOM05D003660 ORTHO05D003415 2.6e-07 58.9 99 41.4
Pp3c15_12320 Physcomitrium patens HOM05D003660 ORTHO05D003415 1.7e-06 56.2 96 38.5


User provided reference genes

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