Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow3G1521 Salvia bowleyana HOM05D003877 ORTHO05D004647 0.0e+00 1369.8 683 100.0
MSTRG.8927 Avicennia marina HOM05D003877 ORTHO05D004647 3.1e-213 745.7 632 60.4
Migut.F00639 Erythranthe guttata HOM05D003877 ORTHO05D004647 3.5e-209 732.3 639 59.5
SGA_v2.0_scaffold60G20966 Striga asiatica HOM05D003877 ORTHO05D004647 1.1e-202 710.7 677 56.0
SGA_v2.0_scaffold2G01375 Striga asiatica HOM05D003877 ORTHO05D004647 1.8e-200 703.4 617 59.3
Oeu056656.1 Olea europaea HOM05D003877 ORTHO05D004647 4.0e-197 692.2 636 57.7
SGA_v2.0_scaffold85G26692 Striga asiatica HOM05D003877 ORTHO05D004647 2.9e-195 686.0 631 57.4
Actinidia29719 Actinidia chinensis HOM05D003877 ORTHO05D004647 2.7e-185 652.9 622 55.5
Dinv10589 Davidia involucrata HOM05D003877 ORTHO05D004647 1.8e-184 650.2 624 55.1
CSS0042673 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 3.0e-184 649.4 644 54.3
Lj1C785G15 Lonicera japonica HOM05D003877 ORTHO05D004647 3.9e-184 649.0 609 55.2
vmacro17690 Vaccinium macrocarpon HOM05D003877 ORTHO05D004647 6.9e-181 638.3 632 53.2
Ca_15152_v3 Cicer arietinum L. HOM05D003877 ORTHO05D004647 7.6e-180 634.8 634 52.5
Cc02_g06060 Coffea canephora HOM05D003877 ORTHO05D004647 1.0e-179 634.4 665 51.7
DCAR_011841 Daucus carota HOM05D003877 ORTHO05D004647 1.0e-179 634.4 620 53.5
TAR623G0028 Trochodendron aralioides HOM05D003877 ORTHO05D004647 1.7e-179 633.6 627 52.6
PGSC0003DMG400030038 Solanum tuberosum HOM05D003877 ORTHO05D004647 2.9e-179 632.9 635 52.8
Nitab4.5_0003391g0120 Nicotiana tabacum HOM05D003877 ORTHO05D004647 1.4e-178 630.6 624 53.4
Medtr3g071580 Medicago truncatula HOM05D003877 ORTHO05D004647 4.2e-178 629.0 618 53.4
Ciclev10031326m.g Citrus clementina HOM05D003877 ORTHO05D004647 7.2e-178 628.2 623 52.5
MD01G1157500 Malus domestica HOM05D003877 ORTHO05D004647 2.1e-177 626.7 634 52.1
Solyc06g050990.3 Solanum lycopersicum HOM05D003877 ORTHO05D004647 2.7e-177 626.3 599 54.6
Glyma.18G024700 Glycine max HOM05D003877 ORTHO05D004647 4.6e-177 625.5 620 53.1
TWI73G0349 Tripterygium wilfordii HOM05D003877 ORTHO05D004647 4.6e-177 625.5 621 52.7
Lj6g0018000 Lotus japonicus HOM05D003877 ORTHO05D004647 6.1e-177 625.2 635 52.1
Sopen06g016790 Solanum pennellii HOM05D003877 ORTHO05D004647 7.9e-177 624.8 599 54.4
Sopen05g031010 Solanum pennellii HOM05D003877 ORTHO05D004647 2.3e-176 623.2 621 53.6
Rhsim03G0146600 Rhododendron simsii HOM05D003877 ORTHO05D004647 3.9e-176 622.5 608 53.1
Cpa.g.sc19.135 Carica papaya HOM05D003877 ORTHO05D004647 1.5e-175 620.5 603 52.6
Nitab4.5_0000058g0130 Nicotiana tabacum HOM05D003877 ORTHO05D004647 3.3e-175 619.4 659 51.6
CAN.G1268.9 Capsicum annuum HOM05D003877 ORTHO05D004647 5.7e-175 618.6 634 52.2
Lsat_1_v5_gn_9_123441 Lactuca sativa HOM05D003877 ORTHO05D004647 7.4e-175 618.2 638 51.3
Potri.008G072600 Populus trichocarpa HOM05D003877 ORTHO05D004647 9.7e-175 617.8 619 53.2
Nitab4.5_0005049g0030 Nicotiana tabacum HOM05D003877 ORTHO05D004647 2.8e-174 616.3 659 51.4
Peaxi162Scf00284g00528 Petunia axillaris HOM05D003877 ORTHO05D004647 2.8e-174 616.3 600 53.8
Thecc.10G011300 Theobroma cacao HOM05D003877 ORTHO05D004647 3.7e-174 615.9 603 52.7
Lalb_Chr08g0231521 Lupinus albus HOM05D003877 ORTHO05D004647 8.2e-174 614.8 637 50.5
Duzib106G1591 Durio zibethinus HOM05D003877 ORTHO05D004647 4.1e-173 612.5 615 52.4
vmacro10004 Vaccinium macrocarpon HOM05D003877 ORTHO05D004647 1.5e-172 610.5 725 46.5
Peaxi162Scf01149g00319 Petunia axillaris HOM05D003877 ORTHO05D004647 3.4e-172 609.4 618 52.4
HanXRQChr08g0221971 Helianthus annuus HOM05D003877 ORTHO05D004647 5.9e-172 608.6 625 51.8
TWI09G1304 Tripterygium wilfordii HOM05D003877 ORTHO05D004647 5.9e-172 608.6 600 52.5
Glyma.05G080100 Glycine max HOM05D003877 ORTHO05D004647 7.7e-172 608.2 634 50.9
PGR142G4288 Punica granatum HOM05D003877 ORTHO05D004647 7.7e-172 608.2 630 51.4
Gorai.010G195300 Gossypium raimondii HOM05D003877 ORTHO05D004647 1.0e-171 607.8 621 50.2
GSVIVG01032757001 Vitis vinifera HOM05D003877 ORTHO05D004647 1.0e-171 607.8 626 51.6
Nitab4.5_0000789g0120 Nicotiana tabacum HOM05D003877 ORTHO05D004647 1.3e-171 607.4 602 54.3
Manes.10G009000 Manihot esculenta HOM05D003877 ORTHO05D004647 1.7e-171 607.1 619 52.0
ECA233G0637 Erigeron canadensis HOM05D003877 ORTHO05D004647 2.2e-171 606.7 602 53.0
arahy.Tifrunner.gnm1.ann1.EHZF9M Arachis hypogaea HOM05D003877 ORTHO05D004647 2.9e-171 606.3 619 50.4
Nn7g35848 Nelumbo nucifera HOM05D003877 ORTHO05D004647 6.5e-171 605.1 620 51.5
Gohir.D06G167400 Gossypium hirsutum HOM05D003877 ORTHO05D004647 1.1e-170 604.4 621 50.1
GSVIVG01032758001 Vitis vinifera HOM05D003877 ORTHO05D004647 3.2e-170 602.8 598 52.8
Gorai.012G079000 Gossypium raimondii HOM05D003877 ORTHO05D004647 4.2e-170 602.4 621 50.9
Phvul.006G048800 Phaseolus vulgaris HOM05D003877 ORTHO05D004647 9.4e-170 601.3 614 51.5
Gohir.A06G161800 Gossypium hirsutum HOM05D003877 ORTHO05D004647 1.2e-169 600.9 621 49.9
Lalb_Chr23g0277091 Lupinus albus HOM05D003877 ORTHO05D004647 1.2e-169 600.9 617 51.7
QL08p063706 Quercus lobata HOM05D003877 ORTHO05D004647 1.6e-169 600.5 631 50.9
TAR633G0464 Trochodendron aralioides HOM05D003877 ORTHO05D004647 1.6e-169 600.5 608 52.0
arahy.Tifrunner.gnm1.ann1.ZCM4RK Arachis hypogaea HOM05D003877 ORTHO05D004647 2.1e-169 600.1 624 50.0
RcHm_v2.0_Chr1g0370931 Rosa chinensis HOM05D003877 ORTHO05D004647 2.1e-169 600.1 627 50.4
FvH4_7g25060 Fragaria vesca HOM05D003877 ORTHO05D004647 7.9e-169 598.2 621 50.4
arahy.Tifrunner.gnm1.ann1.EJG72V Arachis hypogaea HOM05D003877 ORTHO05D004647 1.0e-168 597.8 624 49.7
Potri.010G184600 Populus trichocarpa HOM05D003877 ORTHO05D004647 1.4e-168 597.4 617 51.4
FAN01G0819 Fragaria x ananassa HOM05D003877 ORTHO05D004647 5.1e-168 595.5 621 49.9
FAN03G0426 Fragaria x ananassa HOM05D003877 ORTHO05D004647 5.1e-168 595.5 631 49.1
FAN06G1542 Fragaria x ananassa HOM05D003877 ORTHO05D004647 5.1e-168 595.5 621 50.1
FAN10G2809 Fragaria x ananassa HOM05D003877 ORTHO05D004647 5.1e-168 595.5 621 49.9
CiPaw.02G195400 Carya illinoinensis HOM05D003877 ORTHO05D004647 6.7e-168 595.1 636 50.5
VMungo0540G0037 Vigna mungo HOM05D003877 ORTHO05D004647 6.7e-168 595.1 620 50.8
Haze_17269 Corylus avellana HOM05D003877 ORTHO05D004647 1.1e-167 594.3 619 51.2
AT1G09870 Arabidopsis thaliana HOM05D003877 ORTHO05D004647 9.7e-167 591.3 623 48.5
Dinv21772 Davidia involucrata HOM05D003877 ORTHO05D004647 1.3e-166 590.9 570 55.4
Carub.0001s0925 Capsella rubella HOM05D003877 ORTHO05D004647 2.2e-166 590.1 623 48.6
Prupe.2G255400 Prunus persica HOM05D003877 ORTHO05D004647 2.2e-166 590.1 609 51.7
CANSAT56G2949 Cannabis sativa HOM05D003877 ORTHO05D004647 3.7e-166 589.3 646 49.5
AL1G20470 Arabidopsis lyrata HOM05D003877 ORTHO05D004647 6.3e-166 588.6 623 48.5
Eucgr.G03086 Eucalyptus grandis HOM05D003877 ORTHO05D004647 6.3e-166 588.6 619 49.8
CARHR009900 Cardamine hirsuta HOM05D003877 ORTHO05D004647 8.2e-166 588.2 625 48.8
Gohir.D04G070400 Gossypium hirsutum HOM05D003877 ORTHO05D004647 1.4e-165 587.4 603 51.1
Sp1g08500 Schrenkiella parvula HOM05D003877 ORTHO05D004647 3.1e-165 586.3 627 47.8
AUR62022935 Chenopodium quinoa HOM05D003877 ORTHO05D004647 9.1e-165 584.7 631 48.2
Manes.07G134500 Manihot esculenta HOM05D003877 ORTHO05D004647 1.2e-164 584.3 601 51.6
Aqoxy1G01313 Aquilegia oxysepala HOM05D003877 ORTHO05D004647 3.4e-164 582.8 620 49.0
Thhalv10007485m.g Eutrema salsugineum HOM05D003877 ORTHO05D004647 3.4e-164 582.8 628 47.6
Aqoxy2G01450 Aquilegia oxysepala HOM05D003877 ORTHO05D004647 5.9e-164 582.0 621 49.1
BraA06t23872Z Brassica rapa HOM05D003877 ORTHO05D004647 5.9e-164 582.0 628 48.2
CSS0004354 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 5.9e-164 582.0 592 52.9
THA.LOC104810121 Tarenaya hassleriana HOM05D003877 ORTHO05D004647 7.7e-164 581.6 621 48.5
BcaC07g41857 Brassica carinata HOM05D003877 ORTHO05D004647 1.7e-163 580.5 623 48.5
C08p49240 Brassica napus HOM05D003877 ORTHO05D004647 1.7e-163 580.5 623 48.5
BolC8t52459H Brassica oleracea HOM05D003877 ORTHO05D004647 1.7e-163 580.5 623 48.5
BraA09t41875Z Brassica rapa HOM05D003877 ORTHO05D004647 1.7e-163 580.5 624 48.4
A09p65300 Brassica napus HOM05D003877 ORTHO05D004647 2.9e-163 579.7 624 48.4
Sabra10G0141800 Salix brachista HOM05D003877 ORTHO05D004647 2.5e-162 576.6 650 48.2
A06p06580 Brassica napus HOM05D003877 ORTHO05D004647 9.4e-162 574.7 628 47.9
AUR62012296 Chenopodium quinoa HOM05D003877 ORTHO05D004647 1.6e-161 573.9 634 47.3
CSS0043221 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 2.7e-161 573.2 553 54.8
Aa31LG1G5020 Aethionema arabicum HOM05D003877 ORTHO05D004647 1.4e-160 570.9 621 47.3
Sc11g0005270 Simmondsia chinensis HOM05D003877 ORTHO05D004647 1.4e-160 570.9 603 49.8
Hund13891 Selenicereus undatus HOM05D003877 ORTHO05D004647 2.3e-160 570.1 597 49.1
EL10Ac2g04887 Beta vulgaris HOM05D003877 ORTHO05D004647 3.0e-160 569.7 629 47.4
SalBow3G0419 Salvia bowleyana HOM05D003877 ORTHO05D004647 5.2e-160 568.9 391 78.0
BolC5t29551H Brassica oleracea HOM05D003877 ORTHO05D004647 6.7e-160 568.5 629 47.5
THA.LOC104824338 Tarenaya hassleriana HOM05D003877 ORTHO05D004647 2.6e-159 566.6 603 48.4
C05p07990 Brassica napus HOM05D003877 ORTHO05D004647 4.4e-159 565.8 629 47.4
vmacro17691 Vaccinium macrocarpon HOM05D003877 ORTHO05D004647 5.7e-159 565.5 641 49.1
CSS0044757 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 6.3e-158 562.0 538 55.0
Sed0008918 Sechium edule HOM05D003877 ORTHO05D004647 1.4e-157 560.8 624 48.2
BcaC05g24837 Brassica carinata HOM05D003877 ORTHO05D004647 9.1e-157 558.1 601 48.4
PSO801G0566 Papaver somniferum HOM05D003877 ORTHO05D004647 2.6e-156 556.6 598 48.5
Gohir.A05G331800 Gossypium hirsutum HOM05D003877 ORTHO05D004647 5.9e-156 555.4 603 49.3
PGSC0003DMG400027120 Solanum tuberosum HOM05D003877 ORTHO05D004647 7.7e-156 555.1 563 53.3
Sabra08G0053900 Salix brachista HOM05D003877 ORTHO05D004647 1.0e-155 554.7 657 47.0
SalBow3G3178 Salvia bowleyana HOM05D003877 ORTHO05D004647 1.7e-155 553.9 280 96.4
Hund15887 Selenicereus undatus HOM05D003877 ORTHO05D004647 2.2e-155 553.5 598 48.0
CsaV3_5G010390 Cucumis sativus L. HOM05D003877 ORTHO05D004647 1.1e-154 551.2 608 49.3
ATR0068G102 Amborella trichopoda HOM05D003877 ORTHO05D004647 5.5e-154 548.9 631 46.4
MELO3C018375.2 Cucumis melo HOM05D003877 ORTHO05D004647 3.0e-152 543.1 636 47.3
PSO349G0168 Papaver somniferum HOM05D003877 ORTHO05D004647 3.7e-150 536.2 624 45.4
CDE04G1002 Ceratophyllum demersum HOM05D003877 ORTHO05D004647 1.1e-149 534.6 624 46.0
Ah.10g036260 Amaranthus hybridus HOM05D003877 ORTHO05D004647 1.4e-149 534.3 713 41.4
Psat5g130920 Pisum sativum HOM05D003877 ORTHO05D004647 1.6e-148 530.8 637 46.9
unitig_16.g32857 Utricularia gibba HOM05D003877 ORTHO05D004647 5.9e-148 528.9 676 44.2
Lsat_1_v5_gn_9_60880 Lactuca sativa HOM05D003877 ORTHO05D004647 2.9e-147 526.6 586 48.3
PSO339G0345 Papaver somniferum HOM05D003877 ORTHO05D004647 1.5e-146 524.2 598 46.8
Os03g0818100 Oryza sativa ssp. japonica HOM05D003877 ORTHO05D004647 2.1e-145 520.4 604 46.4
ClCG07G004500 Citrullus lanatus HOM05D003877 ORTHO05D004647 4.7e-145 519.2 604 47.4
Prupe.6G130900 Prunus persica HOM05D003877 ORTHO05D004647 3.0e-144 516.5 629 46.7
Sed0009338 Sechium edule HOM05D003877 ORTHO05D004647 4.0e-144 516.2 600 47.3
ATR0681G014 Amborella trichopoda HOM05D003877 ORTHO05D004647 2.6e-143 513.5 576 48.3
Zm00001eb062330 Zea mays HOM05D003877 ORTHO05D004647 1.3e-142 511.1 608 46.1
Thhalv10002208m.g Eutrema salsugineum HOM05D003877 ORTHO05D004647 2.2e-142 510.4 579 46.1
MELO3C034227.2 Cucumis melo HOM05D003877 ORTHO05D004647 3.1e-141 506.5 635 44.1
Atru.chr12.96 Acer truncatum HOM05D003877 ORTHO05D004647 3.8e-139 499.6 602 46.3
CsaV3_5G010430 Cucumis sativus L. HOM05D003877 ORTHO05D004647 3.0e-136 490.0 623 44.6
CsaV3_5G010400 Cucumis sativus L. HOM05D003877 ORTHO05D004647 4.0e-120 436.4 606 42.1
CSS0003433 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 2.9e-118 430.3 544 46.0
Mapoly0029s0098 Marchantia polymorpha HOM05D003877 ORTHO05D004647 5.0e-115 419.5 631 37.7
Solyc05g052480.4 Solanum lycopersicum HOM05D003877 ORTHO05D004647 1.1e-114 418.3 477 49.7
Pp3c24_6790 Physcomitrium patens HOM05D003877 ORTHO05D004647 3.1e-112 410.2 597 37.0
SMO271G0017 Selaginella moellendorffii HOM05D003877 ORTHO05D004647 5.8e-111 406.0 601 38.6
CDE06G2086 Ceratophyllum demersum HOM05D003877 ORTHO05D004647 3.7e-110 403.3 606 39.9
Pp3c8_15050 Physcomitrium patens HOM05D003877 ORTHO05D004647 3.1e-104 383.6 560 37.3
HPP92_019712 Vanilla planifolia HOM05D003877 ORTHO05D004647 5.4e-93 346.3 461 42.7
AagrBONN_evm.TU.Sc2ySwM_344.2788 Anthoceros agrestis HOM05D003877 ORTHO05D004647 2.7e-92 344.0 666 33.5
unitig_8.g4098 Utricularia gibba HOM05D003877 ORTHO05D004647 9.0e-80 302.4 213 64.8
CsaV3_2G012250 Cucumis sativus L. HOM05D003877 ORTHO05D004647 3.5e-68 263.8 204 62.3
SGA_v2.0_scaffold85G26702 Striga asiatica HOM05D003877 ORTHO05D004647 1.5e-66 258.5 201 64.2
CBR_g38028 Chara braunii HOM05D003877 ORTHO05D004647 8.8e-59 232.6 885 26.1
TPR.G10202 Trifolium pratense HOM05D003877 ORTHO05D004647 6.3e-33 146.7 106 65.1
Lsat_1_v5_gn_5_175980 Lactuca sativa HOM05D003877 ORTHO05D004647 1.4e-32 145.6 111 59.5
SEGI_29662 Sequoiadendron giganteum HOM05D003877 ORTHO05D004647 1.3e-30 139.0 113 57.5
unitig_8.g4097 Utricularia gibba HOM05D003877 ORTHO05D004647 3.8e-30 137.5 97 67.0
CsaV3_2G012240 Cucumis sativus L. HOM05D003877 ORTHO05D004647 9.4e-29 132.9 86 68.6
TAR626G1532 Trochodendron aralioides HOM05D003877 ORTHO05D004647 4.4e-26 124.0 130 51.5
SEGI_27537 Sequoiadendron giganteum HOM05D003877 ORTHO05D004647 9.8e-26 122.9 79 69.6
Cre13.g568600 Chlamydomonas reinhardtii HOM05D003877 ORTHO05D004647 1.3e-22 112.5 511 26.6
TPR.G5082 Trifolium pratense HOM05D003877 ORTHO05D004647 8.6e-22 109.8 80 61.2
Nn5g28638 Nelumbo nucifera HOM05D003877 ORTHO05D004647 1.1e-21 109.4 70 71.4
Manes.09G077219 Manihot esculenta HOM05D003877 ORTHO05D004647 7.2e-21 106.7 72 72.2
Nn7g36267 Nelumbo nucifera HOM05D003877 ORTHO05D004647 5.2e-19 100.5 56 80.4
Manes.18G042850 Manihot esculenta HOM05D003877 ORTHO05D004647 7.8e-15 86.7 51 80.4
CSS0015783 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 2.9e-14 84.7 44 84.1
Manes.06G044901 Manihot esculenta HOM05D003877 ORTHO05D004647 3.9e-14 84.3 46 82.6
Manes.15G188901 Manihot esculenta HOM05D003877 ORTHO05D004647 6.1e-12 77.0 48 75.0
Carub.0003s0920 Capsella rubella HOM05D000468 ORTHO05D114682 2.2e-09 68.6 51 66.7
MELO3C018376.2 Cucumis melo HOM05D003877 ORTHO05D004647 1.4e-08 65.9 45 60.0
MELO3C033083.2 Cucumis melo HOM05D003877 ORTHO05D034944 1.9e-08 65.5 39 74.4
TPR.G5048 Trifolium pratense HOM05D003877 ORTHO05D004647 1.9e-08 65.5 46 60.9
TPR.G30156 Trifolium pratense HOM05D003877 ORTHO05D004647 2.4e-08 65.1 46 60.9
CSS0003201 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 4.1e-08 64.3 41 70.7
SEGI_18884 Sequoiadendron giganteum HOM05D003877 ORTHO05D038325 1.7e-06 58.9 44 52.3
Lsat_1_v5_gn_6_23680 Lactuca sativa HOM05D001176 ORTHO05D014361 3.9e-06 57.8 59 50.8


User provided reference genes

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