Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow3G1488 Salvia bowleyana HOM05D005444 ORTHO05D006773 1.5e-186 656.0 325 100.0
Migut.D02083 Erythranthe guttata HOM05D005444 ORTHO05D006773 4.1e-115 418.7 325 69.2
CSS0026048 Camellia sinensis var. sinensis HOM05D005444 ORTHO05D006773 1.0e-113 414.1 329 66.6
Actinidia34411 Actinidia chinensis HOM05D005444 ORTHO05D006773 6.5e-113 411.4 329 65.7
Haze_24114 Corylus avellana HOM05D005444 ORTHO05D006773 1.9e-112 409.8 330 67.3
Dinv04178 Davidia involucrata HOM05D005444 ORTHO05D006773 4.7e-111 405.2 323 65.9
Cfa011517 Carpinus fangiana HOM05D005444 ORTHO05D006773 1.0e-110 404.1 330 65.8
Nitab4.5_0000463g0210 Nicotiana tabacum HOM05D005444 ORTHO05D006773 2.4e-107 392.9 327 63.0
GSVIVG01024939001 Vitis vinifera HOM05D005444 ORTHO05D006773 5.9e-106 388.3 325 62.8
Cc01_g13010 Coffea canephora HOM05D005444 ORTHO05D006773 1.3e-105 387.1 329 62.3
Peaxi162Scf00774g00121 Petunia axillaris HOM05D005444 ORTHO05D006773 1.7e-105 386.7 327 62.1
CAN.G394.63 Capsicum annuum HOM05D005444 ORTHO05D006773 5.0e-105 385.2 327 61.8
Ciclev10028946m.g Citrus clementina HOM05D005444 ORTHO05D006773 5.6e-104 381.7 328 61.6
Nitab4.5_0001326g0170 Nicotiana tabacum HOM05D005444 ORTHO05D006773 5.6e-104 381.7 352 58.8
Rhsim01G0229400 Rhododendron simsii HOM05D005444 ORTHO05D006773 9.5e-104 380.9 326 62.3
Sopen06g032680 Solanum pennellii HOM05D005444 ORTHO05D006773 1.6e-103 380.2 327 61.5
Solyc06g076250.4 Solanum lycopersicum HOM05D005444 ORTHO05D006773 8.0e-103 377.9 327 61.2
MD03G1090200 Malus domestica HOM05D005444 ORTHO05D006773 1.2e-101 374.0 321 63.2
PGSC0003DMG401030323 Solanum tuberosum HOM05D005444 ORTHO05D006773 1.2e-101 374.0 327 60.9
Lj1A150T42 Lonicera japonica HOM05D005444 ORTHO05D006773 1.5e-101 373.6 265 71.7
ECA236G0569 Erigeron canadensis HOM05D005444 ORTHO05D006773 3.4e-101 372.5 325 60.3
Lsat_1_v5_gn_8_73500 Lactuca sativa HOM05D005444 ORTHO05D006773 9.8e-101 370.9 324 60.2
CANSAT54G1668 Cannabis sativa HOM05D005444 ORTHO05D006773 1.4e-99 367.1 331 59.8
QL01p031522 Quercus lobata HOM05D005444 ORTHO05D006773 7.0e-99 364.8 336 58.9
Manes.02G131500 Manihot esculenta HOM05D005444 ORTHO05D006773 9.2e-99 364.4 326 59.8
Atru.chr3.3946 Acer truncatum HOM05D005444 ORTHO05D006773 1.6e-98 363.6 326 58.0
FvH4_3g36480 Fragaria vesca HOM05D005444 ORTHO05D006773 2.0e-98 363.2 322 59.6
Potri.001G241400 Populus trichocarpa HOM05D005444 ORTHO05D006773 2.0e-98 363.2 327 59.6
vmacro14541 Vaccinium macrocarpon HOM05D005444 ORTHO05D006773 2.0e-98 363.2 258 71.3
MD11G1099800 Malus domestica HOM05D005444 ORTHO05D006773 3.5e-98 362.5 336 59.8
FAN21G3395 Fragaria x ananassa HOM05D005444 ORTHO05D006773 1.7e-97 360.1 322 59.6
Sc21g0005860 Simmondsia chinensis HOM05D005444 ORTHO05D006773 8.6e-97 357.8 318 60.1
HanXRQChr05g0135061 Helianthus annuus HOM05D005444 ORTHO05D006773 4.3e-96 355.5 324 59.3
TAR633G2200 Trochodendron aralioides HOM05D005444 ORTHO05D006773 4.3e-96 355.5 279 64.5
RcHm_v2.0_Chr5g0065341 Rosa chinensis HOM05D005444 ORTHO05D006773 7.3e-96 354.8 322 59.9
Gorai.001G111300 Gossypium raimondii HOM05D005444 ORTHO05D006773 1.2e-95 354.0 320 58.8
Gohir.D07G103400 Gossypium hirsutum HOM05D005444 ORTHO05D006773 2.8e-95 352.8 320 58.4
Potri.009G032300 Populus trichocarpa HOM05D005444 ORTHO05D006773 1.0e-94 350.9 321 57.0
Oeu017397.1 Olea europaea HOM05D005444 ORTHO05D006773 2.3e-94 349.7 304 61.2
Sabra16G0145900 Salix brachista HOM05D005444 ORTHO05D006773 2.3e-94 349.7 283 62.9
Gohir.A07G098900 Gossypium hirsutum HOM05D005444 ORTHO05D006773 4.0e-94 349.0 320 57.8
Sabra09G0022900 Salix brachista HOM05D005444 ORTHO05D006773 1.2e-93 347.4 324 57.1
Actinidia23933 Actinidia chinensis HOM05D000001 ORTHO05D000003 5.8e-93 345.1 345 55.7
Glyma.12G062600 Glycine max HOM05D005444 ORTHO05D006773 9.8e-93 344.4 322 58.1
FAN16G3284 Fragaria x ananassa HOM05D005444 ORTHO05D006773 4.9e-92 342.0 359 53.5
COL.COLO4_18527 Corchorus olitorius HOM05D005444 ORTHO05D006773 8.3e-92 341.3 328 54.6
VMungo1127G0766 Vigna mungo HOM05D005444 ORTHO05D006773 8.3e-92 341.3 322 57.1
Sp6g21080 Schrenkiella parvula HOM05D005444 ORTHO05D006773 7.0e-91 338.2 330 56.7
Eucgr.B02353 Eucalyptus grandis HOM05D005444 ORTHO05D006773 1.2e-90 337.4 305 58.0
FAN11G0832 Fragaria x ananassa HOM05D005444 ORTHO05D006773 1.2e-90 337.4 367 52.0
AT5G59400 Arabidopsis thaliana HOM05D005444 ORTHO05D006773 3.5e-90 335.9 329 56.5
Aa31sc23G420 Aethionema arabicum HOM05D005444 ORTHO05D006773 4.6e-90 335.5 329 56.5
THA.LOC104810774 Tarenaya hassleriana HOM05D005444 ORTHO05D006773 6.0e-90 335.1 329 56.5
Hund04946 Selenicereus undatus HOM05D005444 ORTHO05D006773 1.3e-89 334.0 363 52.1
AL8G35870 Arabidopsis lyrata HOM05D005444 ORTHO05D006773 1.7e-89 333.6 329 56.5
Sed0025445 Sechium edule HOM05D005444 ORTHO05D006773 2.3e-89 333.2 318 56.3
Lj3g0017515 Lotus japonicus HOM05D005444 ORTHO05D006773 3.9e-89 332.4 322 55.9
Phvul.011G063700 Phaseolus vulgaris HOM05D005444 ORTHO05D006773 6.6e-89 331.6 314 57.0
TWI79G0937 Tripterygium wilfordii HOM05D005444 ORTHO05D006773 6.6e-89 331.6 330 56.4
BcaB08g36261 Brassica carinata HOM05D005444 ORTHO05D006773 2.5e-88 329.7 331 55.3
AUR62009560 Chenopodium quinoa HOM05D005444 ORTHO05D006773 2.5e-88 329.7 278 60.1
PSO339G5422 Papaver somniferum HOM05D005444 ORTHO05D006773 4.3e-88 328.9 299 58.2
PSO063G3487 Papaver somniferum HOM05D005444 ORTHO05D006773 5.6e-88 328.6 299 57.9
HanXRQChr06g0178811 Helianthus annuus HOM05D005444 ORTHO05D006773 1.2e-87 327.4 311 55.9
CsaV3_1G034350 Cucumis sativus L. HOM05D005444 ORTHO05D006773 2.1e-87 326.6 349 51.6
BcaC04g19778 Brassica carinata HOM05D005444 ORTHO05D006773 1.1e-86 324.3 334 55.1
C09p51810 Brassica napus HOM05D005444 ORTHO05D006773 1.1e-86 324.3 334 55.1
BolC9t58042H Brassica oleracea HOM05D005444 ORTHO05D006773 1.1e-86 324.3 334 55.1
BraA10t43744Z Brassica rapa HOM05D005444 ORTHO05D006773 1.4e-86 323.9 334 54.8
A10p16600 Brassica napus HOM05D005444 ORTHO05D006773 4.0e-86 322.4 334 54.5
arahy.Tifrunner.gnm1.ann1.XH3YCC Arachis hypogaea HOM05D005444 ORTHO05D006773 6.8e-86 321.6 328 55.2
Glyma.13G336800 Glycine max HOM05D005444 ORTHO05D006773 8.9e-86 321.2 290 58.6
Medtr2g097230 Medicago truncatula HOM05D005444 ORTHO05D006773 8.9e-86 321.2 271 61.3
Ca_01319_v3 Cicer arietinum L. HOM05D005444 ORTHO05D006773 1.2e-85 320.9 272 61.0
EL10Ac7g16033 Beta vulgaris HOM05D005444 ORTHO05D006773 1.5e-85 320.5 222 70.7
Lalb_Chr01g0003631 Lupinus albus HOM05D005444 ORTHO05D006773 4.4e-85 318.9 326 54.0
Carub.0008s2007 Capsella rubella HOM05D005444 ORTHO05D006773 5.8e-85 318.5 332 55.4
arahy.Tifrunner.gnm1.ann1.T6ZDSA Arachis hypogaea HOM05D005444 ORTHO05D006773 7.5e-85 318.2 292 59.2
arahy.Tifrunner.gnm1.ann1.9NI65Y Arachis hypogaea HOM05D005444 ORTHO05D006773 1.7e-84 317.0 292 59.2
arahy.Tifrunner.gnm1.ann1.3F7RX4 Arachis hypogaea HOM05D005444 ORTHO05D006773 4.9e-84 315.5 328 54.6
Glyma.15G037500 Glycine max HOM05D005444 ORTHO05D006773 6.4e-84 315.1 267 60.3
TPR.G34263 Trifolium pratense HOM05D005444 ORTHO05D006773 6.4e-84 315.1 321 53.6
ClCG03G001420 Citrullus lanatus HOM05D005444 ORTHO05D006773 9.2e-83 311.2 388 47.7
FAN25G3546 Fragaria x ananassa HOM05D005444 ORTHO05D006773 1.2e-82 310.8 282 58.5
ATR0559G091 Amborella trichopoda HOM05D005444 ORTHO05D006773 3.5e-82 309.3 264 60.2
CiPaw.13G092700 Carya illinoinensis HOM05D005444 ORTHO05D006773 7.8e-82 308.1 237 67.5
Phvul.L006243 Phaseolus vulgaris HOM05D005444 ORTHO05D006773 7.8e-82 308.1 323 52.6
Thecc.09G320000 Theobroma cacao HOM05D005444 ORTHO05D006773 3.9e-81 305.8 332 51.5
Cpa.g.sc81.131 Carica papaya HOM05D005444 ORTHO05D006773 2.5e-80 303.1 327 54.1
Prupe.6G074400 Prunus persica HOM05D005444 ORTHO05D006773 7.3e-80 301.6 235 68.5
Dinv17019 Davidia involucrata HOM05D005444 ORTHO05D006773 2.1e-79 300.1 269 61.3
Dinv42967 Davidia involucrata HOM05D005444 ORTHO05D006773 2.1e-79 300.1 269 61.3
Dinv43132 Davidia involucrata HOM05D005444 ORTHO05D006773 2.1e-79 300.1 269 61.3
Oeu002422.1 Olea europaea HOM05D005444 ORTHO05D006773 2.8e-79 299.7 458 42.4
PGR102G1676 Punica granatum HOM05D005444 ORTHO05D006773 6.8e-78 295.0 331 51.4
VMungo1080G1107 Vigna mungo HOM05D000758 ORTHO05D002867 1.2e-77 294.3 269 57.6
Duzib168G1171 Durio zibethinus HOM05D005444 ORTHO05D006773 7.6e-77 291.6 316 51.9
CDE04G2637 Ceratophyllum demersum HOM05D005444 ORTHO05D006773 2.9e-76 289.7 269 56.1
CDE09G1090 Ceratophyllum demersum HOM05D005444 ORTHO05D006773 5.4e-75 285.4 262 59.5
MELO3C020623.2 Cucumis melo HOM05D005444 ORTHO05D006773 2.3e-73 280.0 343 48.7
Thhalv10014435m.g Eutrema salsugineum HOM05D005444 ORTHO05D006773 4.0e-70 269.2 247 58.7
AUR62001772 Chenopodium quinoa HOM05D005444 ORTHO05D006773 1.5e-69 267.3 302 50.0
Ca_19148_v3 Cicer arietinum L. HOM05D005444 ORTHO05D006773 2.6e-69 266.5 180 70.0
SEGI_38540 Sequoiadendron giganteum HOM05D005444 ORTHO05D006773 5.8e-69 265.4 283 49.8
Hund18899 Selenicereus undatus HOM05D005444 ORTHO05D006773 1.3e-68 264.2 214 61.7
Psat5g286680 Pisum sativum HOM05D005444 ORTHO05D006773 2.5e-64 250.0 271 52.4
SGA_v2.0_scaffold203G41537 Striga asiatica HOM05D005444 ORTHO05D006773 2.5e-64 250.0 202 62.4
HPP92_009462 Vanilla planifolia HOM05D005444 ORTHO05D006773 1.4e-59 234.2 247 51.4
Mapoly0050s0097 Marchantia polymorpha HOM05D005444 ORTHO05D006773 3.2e-59 233.0 263 46.4
PGSC0003DMG402030323 Solanum tuberosum HOM05D005444 ORTHO05D006773 4.3e-56 222.6 196 57.1
AagrBONN_evm.TU.Sc2ySwM_368.577 Anthoceros agrestis HOM05D005444 ORTHO05D006773 5.6e-56 222.2 260 45.4
Pp3c1_24530 Physcomitrium patens HOM05D005444 ORTHO05D006773 2.1e-55 220.3 263 46.8
TPR.G1035 Trifolium pratense HOM05D005444 ORTHO05D006773 1.1e-54 218.0 220 54.5
Pp3c14_5400 Physcomitrium patens HOM05D005444 ORTHO05D006773 1.4e-51 207.6 286 44.4
SGA_v2.0_scaffold203G41535 Striga asiatica HOM05D005444 ORTHO05D006773 2.4e-46 190.3 132 77.3
CARHR285770 Cardamine hirsuta HOM05D005444 ORTHO05D006773 6.5e-44 182.2 198 50.5
Duzib170G0057 Durio zibethinus HOM05D005444 ORTHO05D006773 6.5e-44 182.2 221 49.8
Aqoxy1G00926 Aquilegia oxysepala HOM05D005444 ORTHO05D006773 2.1e-39 167.2 185 49.7
DCAR_005353 Daucus carota HOM05D005444 ORTHO05D006773 2.9e-36 156.8 141 56.7
MCO07G449 Micromonas commoda HOM05D005444 ORTHO05D006773 1.8e-33 147.5 254 37.4
Zm00001eb355820 Zea mays HOM05D005444 ORTHO05D006773 2.3e-33 147.1 181 44.8
Aqoxy1G00927 Aquilegia oxysepala HOM05D005444 ORTHO05D006773 1.9e-32 144.1 123 64.2
unitig_747.g22037 Utricularia gibba HOM05D005444 ORTHO05D006773 2.5e-32 143.7 115 63.5
TPR.G3768 Trifolium pratense HOM05D005444 ORTHO05D006773 2.2e-31 140.6 118 60.2
unitig_747.g22036 Utricularia gibba HOM05D005444 ORTHO05D006773 6.3e-31 139.0 129 60.5
Nn2g13370 Nelumbo nucifera HOM05D005444 ORTHO05D006773 1.4e-30 137.9 120 58.3
Ah.15g097630 Amaranthus hybridus HOM05D005444 ORTHO05D006773 9.1e-30 135.2 76 82.9
Os05g0110800 Oryza sativa ssp. japonica HOM05D005444 ORTHO05D006773 2.7e-26 123.6 67 88.1
HanXRQChr10g0291051 Helianthus annuus HOM05D005444 ORTHO05D006773 7.4e-24 115.5 88 65.9
HanXRQChr10g0291061 Helianthus annuus HOM05D005444 ORTHO05D006773 7.4e-24 115.5 88 65.9
HanXRQChr06g0167871 Helianthus annuus HOM05D000219 ORTHO05D006773 1.3e-23 114.8 76 73.7
Medtr4g064030 Medicago truncatula HOM05D005444 ORTHO05D006773 8.5e-20 102.1 134 44.0
TAR636G2897 Trochodendron aralioides HOM05D005444 ORTHO05D006773 1.2e-18 98.2 80 60.0
TPR.G27554 Trifolium pratense HOM05D005444 ORTHO05D006773 1.5e-16 91.3 74 56.8
Ah.15g097620 Amaranthus hybridus HOM05D005444 ORTHO05D006773 2.4e-14 84.0 44 86.4
AUR62031662 Chenopodium quinoa HOM05D001050 ORTHO05D001270 5.3e-14 82.8 55 69.1
COL.COLO4_35627 Corchorus olitorius HOM05D005444 ORTHO05D001950 2.0e-13 80.9 105 44.8
TPR.G27777 Trifolium pratense HOM05D005444 ORTHO05D006773 4.5e-13 79.7 91 49.5
Psat5g007960 Pisum sativum HOM05D005444 ORTHO05D006773 1.0e-12 78.6 72 56.9
TPR.G376 Trifolium pratense HOM05D025391 ORTHO05D030167 5.0e-12 76.3 41 80.5
Nitab4.5_0003274g0090 Nicotiana tabacum HOM05D003763 ORTHO05D004315 1.2e-10 71.6 212 29.2
Psat4g229040 Pisum sativum HOM05D005444 ORTHO05D006773 3.6e-10 70.1 42 76.2
Glyma.11G138967 Glycine max HOM05D005444 ORTHO05D006773 6.7e-09 65.9 73 46.6
BcaB01g04587 Brassica carinata HOM05D000021 ORTHO05D000010 7.5e-08 62.4 101 42.6
SMO356G0021 Selaginella moellendorffii HOM05D003763 ORTHO05D004315 2.8e-07 60.5 211 26.5
Zm00001eb065010 Zea mays HOM05D003763 ORTHO05D004315 2.8e-07 60.5 191 28.3


User provided reference genes

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