Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow3G1459 Salvia bowleyana HOM05D004244 ORTHO05D004964 1.0e-168 596.7 307 100.0
SalBow3G0496 Salvia bowleyana HOM05D004244 ORTHO05D004964 3.2e-162 575.1 298 100.0
MSTRG.24646 Avicennia marina HOM05D004244 ORTHO05D004964 2.7e-60 236.5 289 51.2
Migut.N00322 Erythranthe guttata HOM05D004244 ORTHO05D004964 4.0e-43 179.5 302 45.0
Cc03_g06840 Coffea canephora HOM05D004244 ORTHO05D004964 5.2e-43 179.1 251 49.0
Peaxi162Scf00125g01118 Petunia axillaris HOM05D004244 ORTHO05D004964 1.5e-42 177.6 282 43.3
Solyc09g091010.3 Solanum lycopersicum HOM05D004244 ORTHO05D004964 6.3e-41 172.2 281 43.8
Sopen09g033990 Solanum pennellii HOM05D004244 ORTHO05D004964 1.6e-39 167.5 281 42.7
PGSC0003DMG402001493 Solanum tuberosum HOM05D004244 ORTHO05D004964 1.1e-37 161.4 285 42.1
Nitab4.5_0000867g0080 Nicotiana tabacum HOM05D004244 ORTHO05D004964 2.5e-37 160.2 282 41.1
Nitab4.5_0000451g0020 Nicotiana tabacum HOM05D004244 ORTHO05D004964 7.2e-37 158.7 271 41.3
Hma1.2p1_0112F.1_g054970 Hydrangea macrophylla HOM05D004244 ORTHO05D004964 1.0e-35 154.8 269 38.3
COL.COLO4_16006 Corchorus olitorius HOM05D004244 ORTHO05D004964 3.0e-35 153.3 232 44.8
GSVIVG01001856001 Vitis vinifera HOM05D004244 ORTHO05D004964 3.0e-35 153.3 266 42.5
Dinv27132 Davidia involucrata HOM05D004244 ORTHO05D004964 6.8e-35 152.1 252 40.5
Gohir.D09G232300 Gossypium hirsutum HOM05D004244 ORTHO05D004964 2.6e-34 150.2 238 45.8
Gohir.A09G231200 Gossypium hirsutum HOM05D004244 ORTHO05D004964 4.4e-34 149.4 235 43.4
Manes.03G156200 Manihot esculenta HOM05D004244 ORTHO05D004964 7.5e-34 148.7 194 47.9
Gorai.006G255200 Gossypium raimondii HOM05D004244 ORTHO05D004964 8.3e-33 145.2 237 43.0
Duzib052G0780 Durio zibethinus HOM05D004244 ORTHO05D004964 1.4e-32 144.4 231 42.4
Glyma.10G132400 Glycine max HOM05D004244 ORTHO05D004964 1.4e-32 144.4 288 38.9
QL06p021978 Quercus lobata HOM05D004244 ORTHO05D004964 1.4e-32 144.4 194 47.9
Lsat_1_v5_gn_2_42020 Lactuca sativa HOM05D004244 ORTHO05D004964 2.4e-32 143.7 239 40.6
Thecc.04G269100 Theobroma cacao HOM05D004244 ORTHO05D004964 2.0e-31 140.6 296 38.5
SGA_v2.0_scaffold398G50771 Striga asiatica HOM05D004244 ORTHO05D004964 3.5e-31 139.8 290 38.6
Cfa014824 Carpinus fangiana HOM05D004244 ORTHO05D004964 7.7e-31 138.7 202 46.0
SalBow4G2096 Salvia bowleyana HOM05D002270 ORTHO05D004964 7.7e-31 138.7 105 77.1
Aqoxy5G00098 Aquilegia oxysepala HOM05D004244 ORTHO05D004964 1.0e-30 138.3 259 37.8
CiPaw.01G175300 Carya illinoinensis HOM05D004244 ORTHO05D004964 1.7e-30 137.5 195 46.7
Actinidia11381 Actinidia chinensis HOM05D004244 ORTHO05D004964 2.2e-30 137.1 199 48.2
FvH4_4g05190 Fragaria vesca HOM05D004244 ORTHO05D004964 2.9e-30 136.7 321 36.8
FAN12G2846 Fragaria x ananassa HOM05D004244 ORTHO05D004964 5.0e-30 136.0 296 37.8
TPR.G23981 Trifolium pratense HOM05D004244 ORTHO05D004964 6.5e-30 135.6 255 39.2
MELO3C023072.2 Cucumis melo HOM05D004244 ORTHO05D004964 3.2e-29 133.3 217 41.9
Actinidia34761 Actinidia chinensis HOM05D004244 ORTHO05D004964 4.2e-29 132.9 248 38.3
CsaV3_2G012190 Cucumis sativus L. HOM05D004244 ORTHO05D004964 4.2e-29 132.9 217 41.5
Phvul.007G227000 Phaseolus vulgaris HOM05D004244 ORTHO05D004964 4.2e-29 132.9 253 38.3
Duzib052G0270 Durio zibethinus HOM05D004244 ORTHO05D004964 5.5e-29 132.5 195 46.2
MD13G1225800 Malus domestica HOM05D004244 ORTHO05D004964 5.5e-29 132.5 258 37.6
Medtr1g045520 Medicago truncatula HOM05D004244 ORTHO05D004964 7.2e-29 132.1 194 45.4
CANSAT78G2336 Cannabis sativa HOM05D004244 ORTHO05D004964 2.1e-28 130.6 258 39.5
Ca_11893_v3 Cicer arietinum L. HOM05D004244 ORTHO05D004964 2.1e-28 130.6 249 38.2
Lalb_Chr03g0036891 Lupinus albus HOM05D004244 ORTHO05D004964 3.6e-28 129.8 248 38.7
TAR362G0565 Trochodendron aralioides HOM05D004244 ORTHO05D004964 4.7e-28 129.4 250 40.0
FAN17G1122 Fragaria x ananassa HOM05D004244 ORTHO05D004964 8.0e-28 128.6 315 36.2
Lj6g0017438 Lotus japonicus HOM05D004244 ORTHO05D004964 8.0e-28 128.6 247 36.8
MD16G1230800 Malus domestica HOM05D004244 ORTHO05D004964 1.0e-27 128.3 258 36.4
Prupe.1G052600 Prunus persica HOM05D004244 ORTHO05D004964 1.4e-27 127.9 258 36.4
MBI07_g19046_MAGBIO Magnolia biondii HOM05D004244 ORTHO05D004964 1.8e-27 127.5 230 42.2
arahy.Tifrunner.gnm1.ann1.QYR710 Arachis hypogaea HOM05D004244 ORTHO05D004964 3.0e-27 126.7 250 38.0
Rhsim02G0048800 Rhododendron simsii HOM05D004244 ORTHO05D004964 4.0e-27 126.3 239 40.2
Haze_11497 Corylus avellana HOM05D004244 ORTHO05D004964 5.2e-27 125.9 181 47.0
TAR633G1781 Trochodendron aralioides HOM05D004244 ORTHO05D004964 5.2e-27 125.9 251 38.2
Potri.010G063300 Populus trichocarpa HOM05D004244 ORTHO05D004964 6.8e-27 125.6 247 38.5
arahy.Tifrunner.gnm1.ann1.9VYP7U Arachis hypogaea HOM05D004244 ORTHO05D004964 2.6e-26 123.6 250 37.6
Nn3g19830 Nelumbo nucifera HOM05D004244 ORTHO05D004964 7.5e-26 122.1 211 42.2
Rhsim09G0132600 Rhododendron simsii HOM05D004244 ORTHO05D004964 7.5e-26 122.1 192 40.1
PSO674G0105 Papaver somniferum HOM05D004244 ORTHO05D004964 2.8e-25 120.2 262 35.1
Nn1g03029 Nelumbo nucifera HOM05D004244 ORTHO05D004964 1.1e-24 118.2 207 41.1
PSO170G0851 Papaver somniferum HOM05D004244 ORTHO05D004964 1.1e-24 118.2 255 34.9
Sabra10G0043500 Salix brachista HOM05D004244 ORTHO05D004964 1.4e-24 117.9 198 43.4
Actinidia38930 Actinidia chinensis HOM05D004244 ORTHO05D004964 2.4e-24 117.1 207 40.6
CDE11G0045 Ceratophyllum demersum HOM05D004244 ORTHO05D004964 4.1e-24 116.3 233 36.5
Cpa.g.sc59.37 Carica papaya HOM05D004244 ORTHO05D004964 7.0e-24 115.5 202 40.6
Eucgr.H02883 Eucalyptus grandis HOM05D004244 ORTHO05D004964 2.0e-23 114.0 191 41.4
EL10Ac3g06716 Beta vulgaris HOM05D004244 ORTHO05D004964 3.5e-23 113.2 208 39.4
TWI09G1213 Tripterygium wilfordii HOM05D004244 ORTHO05D004964 5.9e-23 112.5 257 36.2
ClCG06G007490 Citrullus lanatus HOM05D004244 ORTHO05D004964 1.3e-22 111.3 257 35.4
VMungo0720G2410 Vigna mungo HOM05D004244 ORTHO05D004964 2.9e-22 110.2 183 41.0
ECA238G3737 Erigeron canadensis HOM05D004244 ORTHO05D004964 1.9e-21 107.5 187 38.5
Nitab4.5_0000841g0060 Nicotiana tabacum HOM05D004244 ORTHO05D004964 1.6e-20 104.4 213 35.2
Atru.chr4.1873 Acer truncatum HOM05D004244 ORTHO05D004964 2.8e-20 103.6 188 40.4
GSVIVG01026322001 Vitis vinifera HOM05D004244 ORTHO05D004964 4.7e-20 102.8 192 38.0
Nitab4.5_0008594g0020 Nicotiana tabacum HOM05D004244 ORTHO05D004964 1.0e-19 101.7 215 36.3
Psat1g024120 Pisum sativum HOM05D004244 ORTHO05D004964 2.3e-19 100.5 201 38.8
PGR004G0368 Punica granatum HOM05D004244 ORTHO05D004964 2.3e-19 100.5 254 34.3
CSS0047223 Camellia sinensis var. sinensis HOM05D004244 ORTHO05D004964 3.0e-19 100.1 152 46.1
CSS0047414 Camellia sinensis var. sinensis HOM05D004244 ORTHO05D004964 8.9e-19 98.6 151 44.4
Cc09_g03010 Coffea canephora HOM05D004244 ORTHO05D004964 3.4e-18 96.7 223 35.9
Cpa.g.sc756.3 Carica papaya HOM05D004244 ORTHO05D004964 9.8e-18 95.1 186 36.6
HPP92_025817 Vanilla planifolia HOM05D004244 ORTHO05D004964 1.3e-17 94.7 223 34.5
Sc19g0005660 Simmondsia chinensis HOM05D004244 ORTHO05D004964 1.7e-17 94.4 248 33.5
Gohir.D11G254600 Gossypium hirsutum HOM05D004244 ORTHO05D004964 2.2e-17 94.0 202 33.2
Gorai.007G273200 Gossypium raimondii HOM05D004244 ORTHO05D004964 2.2e-17 94.0 202 33.2
Oeu008815.1 Olea europaea HOM05D004244 ORTHO05D004964 3.7e-17 93.2 155 47.1
Potri.019G023400 Populus trichocarpa HOM05D004244 ORTHO05D004964 3.7e-17 93.2 183 35.5
Duzib151G0660 Durio zibethinus HOM05D004244 ORTHO05D004964 1.1e-16 91.7 166 39.2
Oeu010184.1 Olea europaea HOM05D004244 ORTHO05D004964 1.1e-16 91.7 193 37.8
Atru.chr2.1111 Acer truncatum HOM05D004244 ORTHO05D004964 1.8e-16 90.9 235 34.0
Manes.08G141600 Manihot esculenta HOM05D004244 ORTHO05D004964 2.4e-16 90.5 197 33.5
PGR031G0411 Punica granatum HOM05D004244 ORTHO05D004964 3.2e-16 90.1 224 31.7
Sabra19G0033400 Salix brachista HOM05D004244 ORTHO05D004964 4.1e-16 89.7 181 36.5
Duzib106G0844 Durio zibethinus HOM05D004244 ORTHO05D004964 5.4e-16 89.4 244 32.4
unitig_26.g9547 Utricularia gibba HOM05D004244 ORTHO05D004964 5.4e-16 89.4 242 35.1
Duzib266G0003 Durio zibethinus HOM05D004244 ORTHO05D004964 1.2e-15 88.2 96 51.0
Ciclev10021373m.g Citrus clementina HOM05D004244 ORTHO05D004964 1.3e-14 84.7 184 34.2
SalBow1G0411 Salvia bowleyana HOM05D004244 ORTHO05D004964 1.3e-14 84.7 191 34.0
Eucgr.B01738 Eucalyptus grandis HOM05D004244 ORTHO05D004964 3.0e-14 83.6 205 34.6
Sopen04g021060 Solanum pennellii HOM05D004244 ORTHO05D004964 3.0e-14 83.6 205 32.2
Sed0027895 Sechium edule HOM05D004244 ORTHO05D004964 3.9e-14 83.2 268 31.3
ATR0723G041 Amborella trichopoda HOM05D004244 ORTHO05D004964 5.0e-14 82.8 183 33.9
Carub.0004s1471 Capsella rubella HOM05D004244 ORTHO05D004964 5.0e-14 82.8 196 35.2
Aa31LG5G4140 Aethionema arabicum HOM05D004244 ORTHO05D004964 8.6e-14 82.0 188 35.6
Peaxi162Scf00077g00117 Petunia axillaris HOM05D004244 ORTHO05D004964 8.6e-14 82.0 205 35.6
Thecc.05G266700 Theobroma cacao HOM05D004244 ORTHO05D004964 2.5e-13 80.5 222 32.4
Gohir.A11G244500 Gossypium hirsutum HOM05D004244 ORTHO05D004964 3.3e-13 80.1 177 33.3
AT2G33250 Arabidopsis thaliana HOM05D004244 ORTHO05D004964 4.3e-13 79.7 188 36.7
Hma1.2p1_0130F.1_g060490 Hydrangea macrophylla HOM05D004244 ORTHO05D004964 4.3e-13 79.7 215 34.0
THA.LOC104826102 Tarenaya hassleriana HOM05D004244 ORTHO05D004964 4.3e-13 79.7 195 35.9
EL10Ac4g09763 Beta vulgaris HOM05D004244 ORTHO05D004964 7.3e-13 79.0 194 31.4
Thhalv10017015m.g Eutrema salsugineum HOM05D004244 ORTHO05D004964 7.3e-13 79.0 195 34.4
Carub.0003s0352 Capsella rubella HOM05D004244 ORTHO05D004964 1.6e-12 77.8 184 34.2
Lj2C46G4 Lonicera japonica HOM05D004244 ORTHO05D004964 1.6e-12 77.8 170 34.1
BcaC02g07847 Brassica carinata HOM05D004244 ORTHO05D004964 2.8e-12 77.0 188 36.7
CARHR127250 Cardamine hirsuta HOM05D004244 ORTHO05D004964 3.6e-12 76.6 181 35.4
Sp4g15550 Schrenkiella parvula HOM05D004244 ORTHO05D004964 4.7e-12 76.3 188 35.6
Migut.F02055 Erythranthe guttata HOM05D004244 ORTHO05D004964 6.2e-12 75.9 221 27.1
CAN.G4.41 Capsicum annuum HOM05D004244 ORTHO05D004964 1.0e-11 75.1 181 33.7
AL3G14300 Arabidopsis lyrata HOM05D004244 ORTHO05D004964 1.4e-11 74.7 195 31.8
AL4G28880 Arabidopsis lyrata HOM05D004244 ORTHO05D004964 1.4e-11 74.7 213 32.9
CARHR078490 Cardamine hirsuta HOM05D004244 ORTHO05D004964 1.8e-11 74.3 192 33.9
Sc09g0001820 Simmondsia chinensis HOM05D004244 ORTHO05D004964 5.2e-11 72.8 251 29.9
Thhalv10021319m.g Eutrema salsugineum HOM05D004244 ORTHO05D004964 1.2e-10 71.6 189 31.7
Sp3g03210 Schrenkiella parvula HOM05D004244 ORTHO05D004964 1.2e-10 71.6 189 32.3
Actinidia39939 Actinidia chinensis HOM05D004244 ORTHO05D004964 2.0e-10 70.9 215 30.2
MSTRG.9217 Avicennia marina HOM05D004244 ORTHO05D004964 2.0e-10 70.9 191 28.8
BcaB04g19340 Brassica carinata HOM05D004244 ORTHO05D004964 2.6e-10 70.5 185 34.6
BcaC02g07850 Brassica carinata HOM05D004244 ORTHO05D004964 2.6e-10 70.5 178 33.7
BraA03t12533Z Brassica rapa HOM05D004244 ORTHO05D004964 2.6e-10 70.5 190 31.6
Aa31LG5G14830 Aethionema arabicum HOM05D004244 ORTHO05D004964 5.8e-10 69.3 202 32.2
COL.COLO4_15535 Corchorus olitorius HOM05D004244 ORTHO05D004964 7.5e-10 68.9 201 27.4
Hund24865 Selenicereus undatus HOM05D004244 ORTHO05D004964 7.5e-10 68.9 141 34.0
C04p62700 Brassica napus HOM05D006155 ORTHO05D007529 9.8e-10 68.6 178 34.8
AT3G04310 Arabidopsis thaliana HOM05D004244 ORTHO05D004964 1.7e-09 67.8 182 30.2
Ciclev10005346m.g Citrus clementina HOM05D004244 ORTHO05D004964 1.7e-09 67.8 222 30.2
BcaC01g04379 Brassica carinata HOM05D004244 ORTHO05D004964 2.2e-09 67.4 187 34.2
PGSC0003DMG402028717 Solanum tuberosum HOM05D004244 ORTHO05D004964 2.2e-09 67.4 171 33.3
C03p40780 Brassica napus HOM05D004244 ORTHO05D004964 2.9e-09 67.0 183 33.9
BolC3t16346H Brassica oleracea HOM05D004244 ORTHO05D004964 2.9e-09 67.0 183 33.9
A03p33580 Brassica napus HOM05D004244 ORTHO05D004964 4.9e-09 66.2 188 31.4
BolC4t27754H Brassica oleracea HOM05D006155 ORTHO05D007529 4.9e-09 66.2 178 34.3
vmacro10383 Vaccinium macrocarpon HOM05D004244 ORTHO05D004964 4.9e-09 66.2 212 29.2
Medtr4g088590 Medicago truncatula HOM05D004244 ORTHO05D004964 6.4e-09 65.9 88 47.7
BcaB06g28663 Brassica carinata HOM05D006155 ORTHO05D007529 1.1e-08 65.1 128 38.3
BraA04t18060Z Brassica rapa HOM05D006155 ORTHO05D007529 1.4e-08 64.7 177 34.5
SGA_v2.0_scaffold329G48831 Striga asiatica HOM05D004244 ORTHO05D004964 1.4e-08 64.7 211 29.4
A04p25560 Brassica napus HOM05D004244 ORTHO05D004964 2.4e-08 63.9 174 33.9
Hund07175 Selenicereus undatus HOM05D004244 ORTHO05D004964 9.2e-08 62.0 196 27.0
AUR62000633 Chenopodium quinoa HOM05D004244 ORTHO05D004964 1.2e-07 61.6 173 30.1
Os01g0680600 Oryza sativa ssp. japonica HOM05D004244 ORTHO05D004964 1.0e-06 58.5 216 24.1
Solyc04g050270.1 Solanum lycopersicum HOM05D004244 ORTHO05D004964 6.6e-06 55.8 164 30.5


User provided reference genes

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