Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow3G1410 Salvia bowleyana HOM05D001461 ORTHO05D005534 9.8e-135 483.4 235 100.0
Migut.E01260 Erythranthe guttata HOM05D001461 ORTHO05D005534 1.0e-54 217.6 119 89.9
MSTRG.20880 Avicennia marina HOM05D001461 ORTHO05D005534 6.5e-54 214.9 119 89.9
Migut.B01819 Erythranthe guttata HOM05D001461 ORTHO05D005534 4.2e-53 212.2 119 87.4
SGA_v2.0_scaffold4G02266 Striga asiatica HOM05D001461 ORTHO05D005534 9.4e-53 211.1 119 87.4
SGA_v2.0_scaffold95G28797 Striga asiatica HOM05D001461 ORTHO05D005534 6.7e-51 204.9 119 85.7
unitig_62.g23802 Utricularia gibba HOM05D001461 ORTHO05D005534 8.8e-51 204.5 130 79.2
TWI18G0300 Tripterygium wilfordii HOM05D001461 ORTHO05D005534 1.3e-49 200.7 119 79.8
TWI60G0303 Tripterygium wilfordii HOM05D001461 ORTHO05D005534 2.8e-49 199.5 119 79.0
Atru.chr9.2071 Acer truncatum HOM05D001461 ORTHO05D005534 8.2e-49 198.0 119 80.7
Lalb_Chr09g0332711 Lupinus albus HOM05D001461 ORTHO05D005534 5.3e-48 195.3 115 81.7
FAN04G2189 Fragaria x ananassa HOM05D001461 ORTHO05D002801 9.1e-48 194.5 123 77.2
FAN08G0967 Fragaria x ananassa HOM05D001461 ORTHO05D005534 2.6e-47 193.0 119 79.8
LjContig00312_ERROPOS870357g0027559 Lotus japonicus HOM05D001461 ORTHO05D005534 2.6e-47 193.0 117 81.2
CiPaw.12G086700 Carya illinoinensis HOM05D001461 ORTHO05D005534 3.5e-47 192.6 119 79.0
Dinv32542 Davidia involucrata HOM05D001461 ORTHO05D005534 3.5e-47 192.6 117 80.3
Lsat_1_v5_gn_7_2481 Lactuca sativa HOM05D001461 ORTHO05D005534 3.5e-47 192.6 121 75.2
Medtr5g009740 Medicago truncatula HOM05D001461 ORTHO05D005534 4.5e-47 192.2 117 80.3
FAN13G1856 Fragaria x ananassa HOM05D001461 ORTHO05D005534 5.9e-47 191.8 122 77.9
Hma1.2p1_0384F.1_g140900 Hydrangea macrophylla HOM05D001461 ORTHO05D005534 5.9e-47 191.8 117 80.3
MELO3C008160.2 Cucumis melo HOM05D001461 ORTHO05D005534 7.7e-47 191.4 120 79.2
CsaV3_2G033880 Cucumis sativus L. HOM05D001461 ORTHO05D005534 7.7e-47 191.4 120 79.2
ClCG11G007680 Citrullus lanatus HOM05D001461 ORTHO05D005534 1.0e-46 191.0 120 78.3
CSS0041928 Camellia sinensis var. sinensis HOM05D001461 ORTHO05D005534 1.3e-46 190.7 119 77.3
FvH4_5g03750 Fragaria vesca HOM05D001461 ORTHO05D005534 1.3e-46 190.7 119 79.0
GSVIVG01019462001 Vitis vinifera HOM05D001461 ORTHO05D002801 1.3e-46 190.7 124 76.6
Hma1.2p1_0397F.1_g143760 Hydrangea macrophylla HOM05D001461 ORTHO05D005534 1.7e-46 190.3 116 78.4
Phvul.002G161800 Phaseolus vulgaris HOM05D001461 ORTHO05D005534 1.7e-46 190.3 117 79.5
RcHm_v2.0_Chr7g0195901 Rosa chinensis HOM05D001461 ORTHO05D005534 1.7e-46 190.3 119 77.3
Manes.02G014100 Manihot esculenta HOM05D001461 ORTHO05D005534 2.2e-46 189.9 119 78.2
Prupe.1G460500 Prunus persica HOM05D001461 ORTHO05D005534 2.2e-46 189.9 119 76.5
RcHm_v2.0_Chr6g0304921 Rosa chinensis HOM05D001461 ORTHO05D005534 2.2e-46 189.9 119 77.3
arahy.Tifrunner.gnm1.ann1.PFJ4ZJ Arachis hypogaea HOM05D001461 ORTHO05D005534 5.0e-46 188.7 117 79.5
MD15G1108200 Malus domestica HOM05D001461 ORTHO05D005534 5.0e-46 188.7 119 77.3
Nn7g37350 Nelumbo nucifera HOM05D001461 ORTHO05D005534 5.0e-46 188.7 116 79.3
TPR.G6688 Trifolium pratense HOM05D001461 ORTHO05D005534 5.0e-46 188.7 117 78.6
VMungo1215G2099 Vigna mungo HOM05D001461 ORTHO05D005534 5.0e-46 188.7 117 78.6
arahy.Tifrunner.gnm1.ann1.Z0SXD6 Arachis hypogaea HOM05D001461 ORTHO05D005534 6.5e-46 188.3 117 79.5
Solyc11g062280.2 Solanum lycopersicum HOM05D001461 ORTHO05D005534 6.5e-46 188.3 117 79.5
Sopen11g024260 Solanum pennellii HOM05D001461 ORTHO05D005534 6.5e-46 188.3 117 79.5
PGSC0003DMG401032495 Solanum tuberosum HOM05D001461 ORTHO05D005534 6.5e-46 188.3 117 79.5
Actinidia10093 Actinidia chinensis HOM05D001461 ORTHO05D005534 8.5e-46 188.0 117 76.9
FAN13G2166 Fragaria x ananassa HOM05D001461 ORTHO05D005534 8.5e-46 188.0 119 78.2
Psat2g033040 Pisum sativum HOM05D001461 ORTHO05D005534 8.5e-46 188.0 115 80.0
PGR042G3251 Punica granatum HOM05D001461 ORTHO05D005534 1.1e-45 187.6 117 75.2
CANSAT21G0685 Cannabis sativa HOM05D001461 ORTHO05D005534 1.5e-45 187.2 117 79.5
Glyma.11G019700 Glycine max HOM05D001461 ORTHO05D005534 1.9e-45 186.8 117 75.2
EL10Ac1g00327 Beta vulgaris HOM05D001461 ORTHO05D005534 2.5e-45 186.4 119 74.8
MBI07_g06330_MAGBIO Magnolia biondii HOM05D001461 ORTHO05D005534 2.5e-45 186.4 116 78.4
Potri.003G135100 Populus trichocarpa HOM05D001461 ORTHO05D005534 2.5e-45 186.4 117 78.6
Sed0013897 Sechium edule HOM05D001461 ORTHO05D005534 2.5e-45 186.4 120 75.8
Duzib084G0256 Durio zibethinus HOM05D001461 ORTHO05D005534 3.2e-45 186.0 119 76.5
Prupe.5G111900 Prunus persica HOM05D001461 ORTHO05D005534 3.2e-45 186.0 121 77.7
Aa31LG2G1220 Aethionema arabicum HOM05D001461 ORTHO05D002801 7.2e-45 184.9 200 50.5
COL.COLO4_21750 Corchorus olitorius HOM05D001461 ORTHO05D005534 7.2e-45 184.9 119 73.9
ECA236G4284 Erigeron canadensis HOM05D001461 ORTHO05D005534 9.4e-45 184.5 117 76.1
HanXRQChr04g0120651 Helianthus annuus HOM05D001461 ORTHO05D005534 9.4e-45 184.5 117 75.2
MBI15_g19879_MAGBIO Magnolia biondii HOM05D001461 ORTHO05D005534 9.4e-45 184.5 116 77.6
Thecc.03G290500 Theobroma cacao HOM05D001461 ORTHO05D005534 9.4e-45 184.5 119 73.9
Eucgr.E00823 Eucalyptus grandis HOM05D001461 ORTHO05D005534 1.2e-44 184.1 117 75.2
LjContig00001g0001336 Lotus japonicus HOM05D001461 ORTHO05D005534 1.2e-44 184.1 118 77.1
LjContig00001g0023327 Lotus japonicus HOM05D001461 ORTHO05D005534 1.2e-44 184.1 118 77.1
Zm00001eb376220 Zea mays HOM05D001461 ORTHO05D005534 1.2e-44 184.1 126 69.8
Zm00001eb376910 Zea mays HOM05D001461 ORTHO05D005534 1.2e-44 184.1 126 69.8
PGSC0003DMG400007048 Solanum tuberosum HOM05D001461 ORTHO05D005534 2.1e-44 183.3 117 76.1
Glyma.01G223800 Glycine max HOM05D001461 ORTHO05D005534 3.6e-44 182.6 117 75.2
Zm00001eb376190 Zea mays HOM05D001461 ORTHO05D005534 6.1e-44 181.8 119 72.3
Zm00001eb376310 Zea mays HOM05D001461 ORTHO05D005534 6.1e-44 181.8 119 72.3
Zm00001eb376940 Zea mays HOM05D001461 ORTHO05D005534 6.1e-44 181.8 119 72.3
AT5G41650 Arabidopsis thaliana HOM05D001461 ORTHO05D005534 8.0e-44 181.4 119 73.9
CAN.G375.83 Capsicum annuum HOM05D001461 ORTHO05D005534 8.0e-44 181.4 117 74.4
ECA233G4373 Erigeron canadensis HOM05D001461 ORTHO05D005534 8.0e-44 181.4 117 74.4
FAN18G4081 Fragaria x ananassa HOM05D001461 ORTHO05D005534 8.0e-44 181.4 124 71.0
Cc03_g08310 Coffea canephora HOM05D001461 ORTHO05D005534 1.0e-43 181.0 119 77.3
Carub.0002s0062 Capsella rubella HOM05D001461 ORTHO05D005534 1.4e-43 180.6 119 71.4
Nitab4.5_0002026g0080 Nicotiana tabacum HOM05D001461 ORTHO05D005534 1.4e-43 180.6 117 75.2
Sabra03G0097400 Salix brachista HOM05D001461 ORTHO05D005534 1.4e-43 180.6 127 70.9
Thhalv10027655m.g Eutrema salsugineum HOM05D001461 ORTHO05D002801 1.8e-43 180.3 122 73.0
Peaxi162Scf00029g02519 Petunia axillaris HOM05D001461 ORTHO05D005534 1.8e-43 180.3 117 76.1
Zm00001eb376350 Zea mays HOM05D001461 ORTHO05D005534 1.8e-43 180.3 119 71.4
CARHR212880 Cardamine hirsuta HOM05D001461 ORTHO05D005534 3.0e-43 179.5 117 74.4
AUR62004435 Chenopodium quinoa HOM05D001461 ORTHO05D005534 3.0e-43 179.5 119 73.1
AUR62023513 Chenopodium quinoa HOM05D001461 ORTHO05D005534 3.0e-43 179.5 119 73.1
Zm00001eb376260 Zea mays HOM05D001461 ORTHO05D005534 3.0e-43 179.5 119 71.4
Sc01g0010020 Simmondsia chinensis HOM05D001461 ORTHO05D005534 4.0e-43 179.1 119 73.1
AL2G10830 Arabidopsis lyrata HOM05D001461 ORTHO05D005534 5.2e-43 178.7 119 70.6
DCAR_025235 Daucus carota HOM05D001461 ORTHO05D005534 8.8e-43 177.9 117 74.4
Os06g0158700 Oryza sativa ssp. japonica HOM05D001461 ORTHO05D005534 8.8e-43 177.9 118 70.3
ATR0580G205 Amborella trichopoda HOM05D001461 ORTHO05D005534 1.1e-42 177.6 115 75.7
Aqoxy6G01756 Aquilegia oxysepala HOM05D001461 ORTHO05D005534 1.1e-42 177.6 114 78.1
CARHR046740 Cardamine hirsuta HOM05D001461 ORTHO05D005534 1.1e-42 177.6 117 70.9
Thhalv10023764m.g Eutrema salsugineum HOM05D001461 ORTHO05D005534 1.1e-42 177.6 119 70.6
BcaC04g22537 Brassica carinata HOM05D001461 ORTHO05D005534 1.5e-42 177.2 119 69.7
C09p18050 Brassica napus HOM05D001461 ORTHO05D005534 1.5e-42 177.2 119 69.7
BolC9t54702H Brassica oleracea HOM05D001461 ORTHO05D005534 1.5e-42 177.2 119 69.7
Gohir.A12G232000 Gossypium hirsutum HOM05D001461 ORTHO05D005534 1.5e-42 177.2 117 73.5
Gohir.D12G235300 Gossypium hirsutum HOM05D001461 ORTHO05D005534 1.5e-42 177.2 117 73.5
Gorai.008G251500 Gossypium raimondii HOM05D001461 ORTHO05D005534 1.5e-42 177.2 117 73.5
BcaB07g31442 Brassica carinata HOM05D001461 ORTHO05D005534 2.0e-42 176.8 119 69.7
BcaB07g31521 Brassica carinata HOM05D001461 ORTHO05D005534 2.0e-42 176.8 119 69.7
Migut.E01261 Erythranthe guttata HOM05D001461 ORTHO05D005534 2.6e-42 176.4 100 87.0
A09p14930 Brassica napus HOM05D001461 ORTHO05D005534 4.4e-42 175.6 119 68.9
BraA09t37138Z Brassica rapa HOM05D001461 ORTHO05D005534 4.4e-42 175.6 119 68.9
Aqoxy6G01758 Aquilegia oxysepala HOM05D001461 ORTHO05D005534 5.7e-42 175.3 114 77.2
AT1G64185 Arabidopsis thaliana HOM05D001461 ORTHO05D005534 5.7e-42 175.3 119 68.9
A09p14170 Brassica napus HOM05D001461 ORTHO05D005534 5.7e-42 175.3 119 68.9
BraA09t37065Z Brassica rapa HOM05D001461 ORTHO05D005534 5.7e-42 175.3 119 68.9
PSO384G4702 Papaver somniferum HOM05D001461 ORTHO05D005534 5.7e-42 175.3 121 70.2
C09p17080 Brassica napus HOM05D001461 ORTHO05D005534 1.7e-41 173.7 119 68.1
BolC9t54606H Brassica oleracea HOM05D001461 ORTHO05D005534 1.7e-41 173.7 119 68.1
Thecc.02G012600 Theobroma cacao HOM05D001461 ORTHO05D005534 1.7e-41 173.7 115 72.2
Sed0026937 Sechium edule HOM05D001461 ORTHO05D005534 6.3e-41 171.8 120 71.7
Sc01g0003060 Simmondsia chinensis HOM05D001461 ORTHO05D005534 4.1e-40 169.1 117 73.5
Lj4g0014781 Lotus japonicus HOM05D001461 ORTHO05D005534 5.3e-40 168.7 117 74.4
Carub.0007s3383 Capsella rubella HOM05D001461 ORTHO05D005534 1.2e-39 167.5 119 68.9
Rhsim07G0008500 Rhododendron simsii HOM05D001461 ORTHO05D005534 1.2e-39 167.5 166 55.4
Lsat_1_v5_gn_5_108040 Lactuca sativa HOM05D001461 ORTHO05D005534 2.7e-39 166.4 118 70.3
SEGI_29517 Sequoiadendron giganteum HOM05D001461 ORTHO05D005534 5.9e-39 165.2 117 66.7
CSS0015159 Camellia sinensis var. sinensis HOM05D001461 ORTHO05D005534 6.5e-38 161.8 101 78.2
CSS0025412 Camellia sinensis var. sinensis HOM05D001461 ORTHO05D005534 6.5e-38 161.8 101 78.2
BcaC04g22646 Brassica carinata HOM05D001461 ORTHO05D005534 1.6e-36 157.1 135 58.5
FvH4_5g27350 Fragaria vesca HOM05D001461 ORTHO05D005534 2.7e-36 156.4 98 76.5
TPR.G32972 Trifolium pratense HOM05D001461 ORTHO05D005534 6.1e-36 155.2 97 78.4
Nitab4.5_0000492g0140 Nicotiana tabacum HOM05D001461 ORTHO05D005534 1.4e-35 154.1 102 75.5
HPP92_002836 Vanilla planifolia HOM05D001461 ORTHO05D005534 1.4e-35 154.1 101 72.3
FAN28G0268 Fragaria x ananassa HOM05D001461 ORTHO05D005534 3.0e-35 152.9 98 73.5
Lj4g0009029 Lotus japonicus HOM05D001461 ORTHO05D005534 6.8e-35 151.8 118 67.8
Glyma.15G246700 Glycine max HOM05D001461 ORTHO05D005534 2.6e-34 149.8 101 70.3
Nitab4.5_0004629g0090 Nicotiana tabacum HOM05D001461 ORTHO05D005534 3.7e-33 146.0 123 62.6
Ah.07g196880 Amaranthus hybridus HOM05D001461 ORTHO05D005534 6.3e-33 145.2 101 68.3
Pp3c1_2350 Physcomitrium patens HOM05D001461 ORTHO05D005534 2.0e-31 140.2 111 58.6
SMO364G0470 Selaginella moellendorffii HOM05D001461 ORTHO05D005534 1.0e-30 137.9 114 57.9
AagrBONN_evm.TU.Sc2ySwM_344.4522 Anthoceros agrestis HOM05D001461 ORTHO05D005534 1.3e-30 137.5 113 59.3
Mapoly0143s0026 Marchantia polymorpha HOM05D001461 ORTHO05D005534 7.2e-29 131.7 115 52.2
MD08G1128900 Malus domestica HOM05D001461 ORTHO05D005534 4.7e-28 129.0 109 63.3
Hund27230 Selenicereus undatus HOM05D001461 ORTHO05D005534 1.0e-27 127.9 101 65.3
Oeu054373.3 Olea europaea HOM05D000540 ORTHO05D000681 5.4e-24 115.5 63 87.3
arahy.Tifrunner.gnm1.ann1.F4HMTZ Arachis hypogaea HOM05D001461 ORTHO05D005534 7.7e-23 111.7 72 79.2
Zm00001eb376320 Zea mays HOM05D001461 ORTHO05D005534 2.9e-22 109.8 122 48.4
arahy.Tifrunner.gnm1.ann1.NAT0LD Arachis hypogaea HOM05D001461 ORTHO05D005534 5.0e-22 109.0 71 77.5
FAN13G0962 Fragaria x ananassa HOM05D001461 ORTHO05D005534 7.3e-21 105.1 63 79.4
vmacro13208 Vaccinium macrocarpon HOM05D001461 ORTHO05D005534 9.5e-21 104.8 63 79.4
Lj9C594G4 Lonicera japonica HOM05D001461 ORTHO05D005534 1.2e-20 104.4 67 74.6
Ciclev10022889m.g Citrus clementina HOM05D001461 ORTHO05D005534 2.1e-20 103.6 63 82.5
RcHm_v2.0_Chr5g0061641 Rosa chinensis HOM05D001461 ORTHO05D005534 1.4e-19 100.9 58 84.5
Oeu063667.1 Olea europaea HOM05D001461 ORTHO05D005534 6.8e-19 98.6 153 41.8
Glyma.05G213500 Glycine max HOM05D001461 ORTHO05D005534 1.5e-18 97.4 61 78.7
Glyma.06G264500 Glycine max HOM05D001461 ORTHO05D005534 1.5e-18 97.4 61 75.4
Zm00001eb376250 Zea mays HOM05D001461 ORTHO05D005534 4.4e-18 95.9 56 82.1
arahy.Tifrunner.gnm1.ann1.2LVS12 Arachis hypogaea HOM05D001461 ORTHO05D005534 6.4e-17 92.0 51 80.4
MD08G1130100 Malus domestica HOM05D001461 ORTHO05D005534 6.4e-17 92.0 158 38.6
QL02p032078 Quercus lobata HOM05D001461 ORTHO05D005534 6.4e-17 92.0 53 77.4
Cfa012281 Carpinus fangiana HOM05D001461 ORTHO05D005534 8.3e-17 91.7 53 77.4
MCO07G452 Micromonas commoda HOM05D001461 ORTHO05D005534 8.3e-17 91.7 130 38.5
Actinidia28489 Actinidia chinensis HOM05D001461 ORTHO05D005534 1.8e-16 90.5 51 80.4
PRCOL_00003773 Prasinoderma coloniale HOM05D001461 ORTHO05D005534 3.2e-16 89.7 138 39.1
MD14G1117200 Malus domestica HOM05D001461 ORTHO05D005534 7.0e-16 88.6 52 73.1
Glyma.08G020100 Glycine max HOM05D001461 ORTHO05D005534 9.8e-10 68.2 49 67.3
Solyc07g061860.3 Solanum lycopersicum HOM05D001461 ORTHO05D051078 8.3e-09 65.1 72 48.6
Sopen07g030150 Solanum pennellii HOM05D018748 ORTHO05D009630 9.2e-08 61.6 35 82.9
MD08G1129600 Malus domestica HOM05D001461 ORTHO05D005534 3.0e-06 56.6 102 41.2


User provided reference genes

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