Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow3G1292 Salvia bowleyana HOM05D004796 ORTHO05D006527 2.1e-186 655.6 337 100.0
SalBow3G2368 Salvia bowleyana HOM05D004796 ORTHO05D006527 6.0e-186 654.1 337 99.4
SalBow3G3135 Salvia bowleyana HOM05D004796 ORTHO05D006527 6.0e-186 654.1 337 99.4
MSTRG.23646 Avicennia marina HOM05D004796 ORTHO05D006527 7.9e-154 547.4 457 66.3
SGA_v2.0_scaffold121G33084 Striga asiatica HOM05D004796 ORTHO05D006527 2.4e-150 535.8 457 65.4
SGA_v2.0_scaffold269G46256 Striga asiatica HOM05D004796 ORTHO05D006527 5.0e-148 528.1 458 64.2
Oeu014312.1 Olea europaea HOM05D004796 ORTHO05D006527 1.8e-145 519.6 461 62.3
Nitab4.5_0006325g0030 Nicotiana tabacum HOM05D004796 ORTHO05D006527 7.4e-144 514.2 456 61.8
PGSC0003DMG400030629 Solanum tuberosum HOM05D004796 ORTHO05D006527 9.7e-144 513.8 456 61.6
Cc07_g07590 Coffea canephora HOM05D004796 ORTHO05D006527 1.3e-143 513.5 456 62.9
Sopen02g036470 Solanum pennellii HOM05D004796 ORTHO05D006527 1.7e-143 513.1 456 61.8
CAN.G1061.4 Capsicum annuum HOM05D004796 ORTHO05D006527 6.3e-143 511.1 456 61.6
COL.COLO4_11645 Corchorus olitorius HOM05D004796 ORTHO05D006527 1.1e-142 510.4 411 68.1
Aa31LG1G16340 Aethionema arabicum HOM05D004796 ORTHO05D006527 1.6e-138 496.5 463 59.4
Sed0020912 Sechium edule HOM05D004796 ORTHO05D006527 1.6e-138 496.5 460 60.2
Eucgr.I00651 Eucalyptus grandis HOM05D004796 ORTHO05D006527 3.6e-138 495.4 455 60.9
MELO3C007668.2 Cucumis melo HOM05D004796 ORTHO05D006527 8.0e-138 494.2 458 60.7
Lalb_Chr09g0323791 Lupinus albus HOM05D004796 ORTHO05D006527 8.0e-138 494.2 455 60.4
MD15G1303800 Malus domestica HOM05D004796 ORTHO05D006527 1.4e-137 493.4 455 60.9
ClCG01G017940 Citrullus lanatus HOM05D004796 ORTHO05D006527 2.3e-137 492.7 456 60.7
HanXRQChr14g0447651 Helianthus annuus HOM05D004796 ORTHO05D006527 3.0e-137 492.3 457 60.4
TWI63G0151 Tripterygium wilfordii HOM05D004796 ORTHO05D006527 5.2e-137 491.5 458 60.5
PGR004G2229 Punica granatum HOM05D004796 ORTHO05D006527 2.0e-136 489.6 459 60.6
Hma1.2p1_0477F.1_g160960 Hydrangea macrophylla HOM05D004796 ORTHO05D006527 3.3e-136 488.8 455 60.2
Psat2g172800 Pisum sativum HOM05D004796 ORTHO05D006527 3.3e-136 488.8 458 59.8
Thecc.01G079500 Theobroma cacao HOM05D004796 ORTHO05D006527 3.3e-136 488.8 445 61.3
Hma1.2p1_1953F.1_g308840 Hydrangea macrophylla HOM05D004796 ORTHO05D006527 4.4e-136 488.4 455 60.0
Lalb_Chr16g0379061 Lupinus albus HOM05D004796 ORTHO05D006527 4.4e-136 488.4 456 60.1
Hma1.2p1_0424F.1_g150270 Hydrangea macrophylla HOM05D004796 ORTHO05D006527 5.7e-136 488.0 456 59.6
Duzib147G0087 Durio zibethinus HOM05D004796 ORTHO05D006527 7.4e-136 487.6 456 61.0
Gohir.A05G255700 Gossypium hirsutum HOM05D004796 ORTHO05D006527 7.4e-136 487.6 456 60.3
RcHm_v2.0_Chr2g0109391 Rosa chinensis HOM05D004796 ORTHO05D006527 7.4e-136 487.6 459 60.6
Gohir.D05G257400 Gossypium hirsutum HOM05D004796 ORTHO05D006527 9.7e-136 487.3 456 60.3
Gorai.009G268800 Gossypium raimondii HOM05D004796 ORTHO05D006527 9.7e-136 487.3 456 60.3
Haze_03962 Corylus avellana HOM05D004796 ORTHO05D006527 1.3e-135 486.9 467 59.5
DCAR_010778 Daucus carota HOM05D004796 ORTHO05D006527 1.3e-135 486.9 457 60.2
Duzib187G1710 Durio zibethinus HOM05D004796 ORTHO05D006527 1.3e-135 486.9 456 60.5
Lj2C425T5 Lonicera japonica HOM05D004796 ORTHO05D006527 1.7e-135 486.5 461 59.9
THA.LOC104798404 Tarenaya hassleriana HOM05D004796 ORTHO05D006527 1.7e-135 486.5 457 60.0
QL06p038221 Quercus lobata HOM05D004796 ORTHO05D006527 2.2e-135 486.1 456 59.2
Potri.007G000600 Populus trichocarpa HOM05D004796 ORTHO05D006527 2.8e-135 485.7 454 60.4
Medtr5g014820 Medicago truncatula HOM05D004796 ORTHO05D006527 6.3e-135 484.6 457 58.9
Sc07g0000270 Simmondsia chinensis HOM05D004796 ORTHO05D006527 6.3e-135 484.6 440 61.6
CSS0047287 Camellia sinensis var. sinensis HOM05D004796 ORTHO05D006527 8.2e-135 484.2 458 60.3
Cfa006794 Carpinus fangiana HOM05D004796 ORTHO05D006527 8.2e-135 484.2 417 63.3
TPR.G28859 Trifolium pratense HOM05D004796 ORTHO05D006527 1.1e-134 483.8 461 59.2
Cpa.g.sc129.49 Carica papaya HOM05D004796 ORTHO05D006527 1.4e-134 483.4 454 60.1
TAR628G0926 Trochodendron aralioides HOM05D004796 ORTHO05D006527 2.4e-134 482.6 433 61.7
arahy.Tifrunner.gnm1.ann1.P6WLKW Arachis hypogaea HOM05D004796 ORTHO05D006527 4.1e-134 481.9 459 58.6
arahy.Tifrunner.gnm1.ann1.R82CC3 Arachis hypogaea HOM05D004796 ORTHO05D006527 4.1e-134 481.9 459 58.6
Prupe.6G213300 Prunus persica HOM05D004796 ORTHO05D006527 4.1e-134 481.9 458 59.8
CSS0039666 Camellia sinensis var. sinensis HOM05D004796 ORTHO05D006527 5.3e-134 481.5 458 59.8
Gohir.D12G078300 Gossypium hirsutum HOM05D004796 ORTHO05D006527 7.0e-134 481.1 456 60.1
Nn5g30704 Nelumbo nucifera HOM05D004796 ORTHO05D006527 7.0e-134 481.1 464 59.3
ECA234G3987 Erigeron canadensis HOM05D004796 ORTHO05D006527 3.5e-133 478.8 458 60.0
FvH4_1g18610 Fragaria vesca HOM05D004796 ORTHO05D006527 4.5e-133 478.4 455 59.1
Gohir.A12G081500 Gossypium hirsutum HOM05D004796 ORTHO05D006527 4.5e-133 478.4 456 59.4
PSO170G1369 Papaver somniferum HOM05D004796 ORTHO05D006527 4.5e-133 478.4 458 58.5
Aqoxy6G02400 Aquilegia oxysepala HOM05D004796 ORTHO05D006527 7.7e-133 477.6 441 59.9
PSO063G7095 Papaver somniferum HOM05D004796 ORTHO05D006527 1.7e-132 476.5 454 58.6
Atru.chr3.1085 Acer truncatum HOM05D004796 ORTHO05D006527 3.8e-132 475.3 461 56.8
Lsat_1_v5_gn_2_81541 Lactuca sativa HOM05D004796 ORTHO05D006527 5.0e-132 474.9 451 59.4
Ca_24663_v3 Cicer arietinum L. HOM05D004796 ORTHO05D006527 6.5e-132 474.6 458 58.7
FAN26G2906 Fragaria x ananassa HOM05D004796 ORTHO05D006527 6.5e-132 474.6 455 59.3
Manes.12G119000 Manihot esculenta HOM05D004796 ORTHO05D006527 6.5e-132 474.6 460 58.9
PSO782G2535 Papaver somniferum HOM05D004796 ORTHO05D006527 6.5e-132 474.6 455 57.8
CAN.G529.24 Capsicum annuum HOM05D004796 ORTHO05D006527 1.1e-131 473.8 410 62.4
Aqoxy5G00233 Aquilegia oxysepala HOM05D004796 ORTHO05D006527 1.5e-131 473.4 434 60.1
CiPaw.07G039300 Carya illinoinensis HOM05D004796 ORTHO05D006527 1.5e-131 473.4 467 58.0
CANSAT01G0390 Cannabis sativa HOM05D004796 ORTHO05D006527 1.9e-131 473.0 459 58.4
Sabra08G0002600 Salix brachista HOM05D004796 ORTHO05D006527 1.9e-131 473.0 456 58.3
Nn4g24745 Nelumbo nucifera HOM05D004796 ORTHO05D006527 3.2e-131 472.2 414 62.6
AUR62007967 Chenopodium quinoa HOM05D004796 ORTHO05D006527 7.2e-131 471.1 457 58.2
Lj2g0010705 Lotus japonicus HOM05D004796 ORTHO05D006527 7.2e-131 471.1 459 57.1
MBI11_g39360_MAGBIO Magnolia biondii HOM05D004796 ORTHO05D006527 7.2e-131 471.1 455 57.6
FAN23G2833 Fragaria x ananassa HOM05D004796 ORTHO05D006527 9.4e-131 470.7 455 58.9
Glyma.11G044600 Glycine max HOM05D004796 ORTHO05D006527 1.2e-130 470.3 459 58.4
PSO210G2597 Papaver somniferum HOM05D004796 ORTHO05D006527 4.7e-130 468.4 459 57.5
FAN28G1552 Fragaria x ananassa HOM05D004796 ORTHO05D006527 6.1e-130 468.0 455 58.2
Glyma.01G197100 Glycine max HOM05D004796 ORTHO05D006527 6.1e-130 468.0 459 58.0
ATR1120G045 Amborella trichopoda HOM05D004796 ORTHO05D006527 1.0e-129 467.2 463 57.0
Ciclev10025572m.g Citrus clementina HOM05D004796 ORTHO05D006527 1.4e-129 466.8 458 56.1
Sabra07G0000600 Salix brachista HOM05D004796 ORTHO05D006527 2.3e-129 466.1 401 64.6
VMungo1215G0536 Vigna mungo HOM05D004796 ORTHO05D006527 5.2e-129 464.9 457 57.5
Phvul.002G008200 Phaseolus vulgaris HOM05D004796 ORTHO05D006527 6.8e-129 464.5 458 57.4
HPP92_019516 Vanilla planifolia HOM05D004796 ORTHO05D006527 2.6e-128 462.6 467 57.0
Ah.03g139580 Amaranthus hybridus HOM05D004796 ORTHO05D006527 4.4e-128 461.8 460 57.0
Dinv23067 Davidia involucrata HOM05D004796 ORTHO05D006527 9.8e-128 460.7 444 59.2
Actinidia36405 Actinidia chinensis HOM05D004796 ORTHO05D006527 4.1e-126 455.3 405 62.2
Gorai.008G087200 Gossypium raimondii HOM05D004796 ORTHO05D006527 7.0e-126 454.5 440 59.5
HanXRQChr14g0461401 Helianthus annuus HOM05D004796 ORTHO05D006527 2.7e-125 452.6 455 55.6
Sp2g28820 Schrenkiella parvula HOM05D004796 ORTHO05D006527 2.7e-125 452.6 461 55.5
AT5G65720 Arabidopsis thaliana HOM05D004796 ORTHO05D006527 7.7e-125 451.1 455 55.8
Solyc02g091900.4 Solanum lycopersicum HOM05D004796 ORTHO05D006527 2.2e-124 449.5 344 69.2
Zm00001eb310290 Zea mays HOM05D004796 ORTHO05D006527 6.5e-124 448.0 453 55.0
BcaB04g20026 Brassica carinata HOM05D004796 ORTHO05D006527 1.9e-123 446.4 457 55.4
SEGI_09827 Sequoiadendron giganteum HOM05D004796 ORTHO05D006527 1.9e-123 446.4 446 55.4
A09p09140 Brassica napus HOM05D004796 ORTHO05D006527 3.2e-123 445.7 458 55.0
CARHR279720 Cardamine hirsuta HOM05D004796 ORTHO05D006527 3.2e-123 445.7 463 55.3
CDE02G1131 Ceratophyllum demersum HOM05D004796 ORTHO05D006527 3.2e-123 445.7 417 57.3
BolC9t53963H Brassica oleracea HOM05D004796 ORTHO05D006527 4.2e-123 445.3 457 55.4
BraA09t36565Z Brassica rapa HOM05D004796 ORTHO05D006527 7.2e-123 444.5 458 55.0
AL8G43440 Arabidopsis lyrata HOM05D004796 ORTHO05D006527 9.4e-123 444.1 455 55.4
C09p10650 Brassica napus HOM05D004796 ORTHO05D006527 1.2e-122 443.7 457 55.1
Thhalv10004176m.g Eutrema salsugineum HOM05D004796 ORTHO05D006527 1.6e-122 443.4 460 54.6
BcaC04g23250 Brassica carinata HOM05D004796 ORTHO05D006527 2.7e-122 442.6 457 55.1
Nitab4.5_0000396g0100 Nicotiana tabacum HOM05D004796 ORTHO05D006527 6.1e-122 441.4 391 63.2
CDE01G0270 Ceratophyllum demersum HOM05D004796 ORTHO05D006527 4.0e-121 438.7 384 61.7
Carub.0008s2662 Capsella rubella HOM05D004796 ORTHO05D006527 8.8e-121 437.6 459 54.5
Migut.H00312 Erythranthe guttata HOM05D004796 ORTHO05D006527 8.8e-121 437.6 427 60.4
Os09g0338400 Oryza sativa ssp. japonica HOM05D004796 ORTHO05D006527 8.8e-121 437.6 459 53.6
Pp3c2_20850 Physcomitrium patens HOM05D004796 ORTHO05D006527 1.1e-118 430.6 443 53.7
CsaV3_6G044470 Cucumis sativus L. HOM05D004796 ORTHO05D006527 2.4e-118 429.5 460 55.0
SMO172G0132 Selaginella moellendorffii HOM05D004796 ORTHO05D006527 1.2e-117 427.2 410 57.1
CBR_g17082 Chara braunii HOM05D004796 ORTHO05D006527 1.6e-117 426.8 444 52.9
Peaxi162Scf00096g01526 Petunia axillaris HOM05D004796 ORTHO05D006527 1.6e-117 426.8 338 66.9
CBR_g17075 Chara braunii HOM05D004796 ORTHO05D006527 3.5e-117 425.6 444 52.9
Pp3c1_20380 Physcomitrium patens HOM05D004796 ORTHO05D006527 7.7e-117 424.5 432 53.7
GSVIVG01008311001 Vitis vinifera HOM05D004796 ORTHO05D006527 5.0e-116 421.8 377 64.5
Mapoly0184s0007 Marchantia polymorpha HOM05D004796 ORTHO05D006527 2.0e-112 409.8 411 54.3
PRCOL_00005106 Prasinoderma coloniale HOM05D004796 ORTHO05D006527 3.9e-108 395.6 343 56.9
Aa31LG11G11240 Aethionema arabicum HOM05D004796 ORTHO05D006527 1.1e-107 394.0 382 56.5
Cre02.g146250 Chlamydomonas reinhardtii HOM05D004796 ORTHO05D006527 5.8e-104 381.7 434 48.2
Haze_27134 Corylus avellana HOM05D004796 ORTHO05D006527 3.7e-103 379.0 330 57.9
MCO07G690 Micromonas commoda HOM05D004796 ORTHO05D006527 1.1e-102 377.5 410 49.5
EL10Ac6g14948 Beta vulgaris HOM05D004796 ORTHO05D006527 9.2e-102 374.4 372 56.2
Peaxi162Scf00854g00110 Petunia axillaris HOM05D004796 ORTHO05D006527 9.2e-102 374.4 338 63.3
AagrBONN_evm.TU.Sc2ySwM_228.3102 Anthoceros agrestis HOM05D004796 ORTHO05D006527 5.2e-97 358.6 412 48.8
GSVIVG01003606001 Vitis vinifera HOM05D004796 ORTHO05D006527 2.2e-95 353.2 305 64.9
Cfa026265 Carpinus fangiana HOM05D004796 ORTHO05D006527 3.6e-82 309.3 404 43.6
TAR381G1547 Trochodendron aralioides HOM05D004796 ORTHO05D006527 2.0e-80 303.5 341 53.4
THA.LOC104817643 Tarenaya hassleriana HOM05D004796 ORTHO05D006527 1.1e-65 254.6 316 49.1
Dinv26978 Davidia involucrata HOM05D004796 ORTHO05D016811 1.5e-59 234.2 161 78.3
MBI11_g19461_MAGBIO Magnolia biondii HOM05D004796 ORTHO05D006527 2.1e-58 230.3 278 48.2
HanXRQChr14g0447641 Helianthus annuus HOM05D004796 ORTHO05D006527 4.0e-57 226.1 154 76.0
THA.LOC104800063 Tarenaya hassleriana HOM05D004796 ORTHO05D016811 5.3e-49 199.1 112 87.5
ECA240G3001 Erigeron canadensis HOM05D004796 ORTHO05D006527 6.3e-42 175.6 98 89.8
FAN04G2432 Fragaria x ananassa HOM05D004796 ORTHO05D016811 2.0e-40 170.6 99 85.9
FvH4_3g39110 Fragaria vesca HOM05D004796 ORTHO05D016811 8.8e-36 155.2 91 84.6
FvH4_4g11530 Fragaria vesca HOM05D004796 ORTHO05D016811 2.0e-35 154.1 91 85.7
FAN11G3064 Fragaria x ananassa HOM05D004796 ORTHO05D016811 4.1e-33 146.4 83 88.0
HPP92_019568 Vanilla planifolia HOM05D004796 ORTHO05D016811 4.2e-30 136.3 84 79.8
CAN.G541.23 Capsicum annuum HOM05D004796 ORTHO05D006527 3.7e-26 123.2 94 74.5
CBR_g8345 Chara braunii HOM05D004796 ORTHO05D034338 3.5e-24 116.7 386 25.6
RcHm_v2.0_Chr5g0045361 Rosa chinensis HOM05D004796 ORTHO05D006527 4.5e-24 116.3 83 69.9
Duzib160G0718 Durio zibethinus HOM05D004796 ORTHO05D006527 4.4e-19 99.8 93 51.6
BcaC01g02817 Brassica carinata HOM05D004796 ORTHO05D016811 3.2e-14 83.6 55 81.8
C03p59950 Brassica napus HOM05D004796 ORTHO05D016811 3.4e-11 73.6 42 85.7
BolC3t18259H Brassica oleracea HOM05D004796 ORTHO05D016811 3.4e-11 73.6 42 85.7
Cre07.g322000 Chlamydomonas reinhardtii HOM05D004796 ORTHO05D034338 9.8e-11 72.0 238 28.6
MCO10G007 Micromonas commoda HOM05D004796 ORTHO05D034338 2.8e-10 70.5 116 33.6
RcHm_v2.0_Chr2g0109351 Rosa chinensis HOM05D004796 ORTHO05D006527 1.8e-09 67.8 74 48.6
CAN.G212.10 Capsicum annuum HOM05D000007 ORTHO05D000039 1.3e-07 61.6 54 61.1
HPP92_019567 Vanilla planifolia HOM05D004796 ORTHO05D006527 6.5e-07 59.3 106 38.7


User provided reference genes

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