Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow3G1198 Salvia bowleyana HOM05D007104 ORTHO05D008851 0.0e+00 1520.4 859 100.0
Migut.J00404 Erythranthe guttata HOM05D007104 ORTHO05D008851 1.5e-262 909.8 858 66.3
MSTRG.19128 Avicennia marina HOM05D007104 ORTHO05D008851 8.9e-234 814.3 853 62.0
SGA_v2.0_scaffold126G33879 Striga asiatica HOM05D007104 ORTHO05D008851 2.7e-206 723.0 859 55.8
Peaxi162Scf00005g05111 Petunia axillaris HOM05D007104 ORTHO05D008851 7.6e-193 678.3 877 52.9
Cc06_g03420 Coffea canephora HOM05D007104 ORTHO05D008851 5.1e-189 665.6 880 52.2
Hma1.2p1_0111F.1_g053700 Hydrangea macrophylla HOM05D007104 ORTHO05D008851 4.8e-187 659.1 814 54.8
Nitab4.5_0006316g0040 Nicotiana tabacum HOM05D007104 ORTHO05D008851 2.6e-185 653.3 877 51.3
Nitab4.5_0000848g0180 Nicotiana tabacum HOM05D007104 ORTHO05D008851 2.9e-184 649.8 871 51.1
Sopen09g002070 Solanum pennellii HOM05D007104 ORTHO05D008851 6.4e-184 648.7 868 51.2
GSVIVG01025541001 Vitis vinifera HOM05D007104 ORTHO05D008851 1.1e-183 647.9 869 52.7
Solyc09g007200.4 Solanum lycopersicum HOM05D007104 ORTHO05D008851 4.2e-183 646.0 872 50.9
Thecc.05G052200 Theobroma cacao HOM05D007104 ORTHO05D008851 9.3e-183 644.8 815 53.5
EL10Ac7g17325 Beta vulgaris HOM05D007104 ORTHO05D008851 1.2e-182 644.4 803 53.1
Dinv35696 Davidia involucrata HOM05D007104 ORTHO05D008851 1.2e-182 644.4 882 51.5
TAR633G1446 Trochodendron aralioides HOM05D007104 ORTHO05D008851 1.2e-182 644.4 832 52.4
Gorai.009G420800 Gossypium raimondii HOM05D007104 ORTHO05D008851 3.5e-182 642.9 815 52.6
Duzib128G0648 Durio zibethinus HOM05D007104 ORTHO05D008851 6.0e-182 642.1 810 54.2
Thhalv10012661m.g Eutrema salsugineum HOM05D007104 ORTHO05D008851 3.9e-181 639.4 838 51.3
Gohir.A04G077100 Gossypium hirsutum HOM05D007104 ORTHO05D008851 5.1e-181 639.0 814 52.6
Aa31LG1G22070 Aethionema arabicum HOM05D007104 ORTHO05D008851 3.8e-176 622.9 863 48.0
ECA238G4406 Erigeron canadensis HOM05D001465 ORTHO05D001434 1.4e-175 620.9 843 50.2
Ciclev10011055m.g Citrus clementina HOM05D007104 ORTHO05D008851 3.9e-173 612.8 849 50.4
Manes.08G001800 Manihot esculenta HOM05D007104 ORTHO05D008851 2.1e-171 607.1 877 48.8
CAN.G350.45 Capsicum annuum HOM05D007104 ORTHO05D008851 1.1e-170 604.7 777 51.9
MD12G1126500 Malus domestica HOM05D007104 ORTHO05D008851 1.8e-170 604.0 824 50.4
Potri.006G132700 Populus trichocarpa HOM05D007104 ORTHO05D008851 1.8e-170 604.0 876 49.0
CiPaw.09G181900 Carya illinoinensis HOM05D007104 ORTHO05D008851 6.9e-170 602.1 828 51.1
AUR62040527 Chenopodium quinoa HOM05D007104 ORTHO05D008851 9.0e-170 601.7 812 49.5
Sabra06G0104200 Salix brachista HOM05D007104 ORTHO05D008851 1.5e-169 600.9 872 48.6
Nn2g12960 Nelumbo nucifera HOM05D007104 ORTHO05D008851 3.4e-169 599.7 890 48.9
RcHm_v2.0_Chr3g0468421 Rosa chinensis HOM05D007104 ORTHO05D008851 3.4e-169 599.7 841 49.7
FAN05G0960 Fragaria x ananassa HOM05D007104 ORTHO05D008851 8.4e-168 595.1 859 49.0
arahy.Tifrunner.gnm1.ann1.Z3T1FA Arachis hypogaea HOM05D007104 ORTHO05D008851 1.1e-167 594.7 786 49.2
FAN14G4814 Fragaria x ananassa HOM05D007104 ORTHO05D008851 1.1e-167 594.7 862 49.1
arahy.Tifrunner.gnm1.ann1.UD3AFU Arachis hypogaea HOM05D007104 ORTHO05D008851 2.5e-167 593.6 787 49.2
C09p73820 Brassica napus HOM05D007104 ORTHO05D008851 9.3e-167 591.7 848 48.3
BolC9t60116H Brassica oleracea HOM05D007104 ORTHO05D008851 9.3e-167 591.7 848 48.3
A10p32890 Brassica napus HOM05D007104 ORTHO05D008851 3.5e-166 589.7 845 48.6
BraA10t45326Z Brassica rapa HOM05D007104 ORTHO05D008851 3.5e-166 589.7 845 48.6
Sc01g0003660 Simmondsia chinensis HOM05D007104 ORTHO05D008851 3.5e-166 589.7 747 51.8
Haze_20670 Corylus avellana HOM05D007104 ORTHO05D008851 6.1e-166 589.0 854 50.2
DCAR_017721 Daucus carota HOM05D007104 ORTHO05D008851 6.1e-166 589.0 838 48.7
HanXRQChr05g0129241 Helianthus annuus HOM05D007104 ORTHO05D008851 3.9e-165 586.3 803 50.1
BcaC06g32013 Brassica carinata HOM05D007104 ORTHO05D008851 5.1e-165 585.9 845 47.9
Lsat_1_v5_gn_2_109900 Lactuca sativa HOM05D007104 ORTHO05D008851 1.9e-164 583.9 819 50.2
Sp6g39750 Schrenkiella parvula HOM05D007104 ORTHO05D008851 9.7e-164 581.6 830 47.8
FvH4_6g15120 Fragaria vesca HOM05D007104 ORTHO05D008851 1.6e-163 580.9 873 48.1
THA.LOC104826989 Tarenaya hassleriana HOM05D007104 ORTHO05D008851 1.6e-163 580.9 813 49.3
CSS0009185 Camellia sinensis var. sinensis HOM05D007104 ORTHO05D008851 2.2e-163 580.5 813 50.4
Carub.0006s0163 Capsella rubella HOM05D007104 ORTHO05D008851 2.8e-163 580.1 802 48.9
AL6G12100 Arabidopsis lyrata HOM05D007104 ORTHO05D008851 2.4e-162 577.0 802 49.0
Actinidia05278 Actinidia chinensis HOM05D007104 ORTHO05D008851 3.1e-162 576.6 882 48.0
COL.COLO4_27102 Corchorus olitorius HOM05D007104 ORTHO05D008851 2.2e-160 570.5 706 54.1
Gohir.D04G116200 Gossypium hirsutum HOM05D007104 ORTHO05D008851 6.5e-160 568.9 698 54.7
AT5G02830 Arabidopsis thaliana HOM05D007104 ORTHO05D008851 1.9e-159 567.4 803 48.1
Hund12063 Selenicereus undatus HOM05D007104 ORTHO05D008851 2.5e-159 567.0 814 48.5
Prupe.6G243100 Prunus persica HOM05D007104 ORTHO05D008851 3.6e-158 563.1 831 49.5
Cfa017487 Carpinus fangiana HOM05D007104 ORTHO05D008851 2.0e-156 557.4 830 48.9
Sed0027238 Sechium edule HOM05D007104 ORTHO05D008851 5.7e-156 555.8 823 47.9
PGR004G2266 Punica granatum HOM05D007104 ORTHO05D008851 7.4e-156 555.4 816 48.0
vmacro08689 Vaccinium macrocarpon HOM05D007104 ORTHO05D008851 9.7e-156 555.1 790 50.6
Lj3C977G16 Lonicera japonica HOM05D007104 ORTHO05D008851 1.7e-155 554.3 875 48.2
QL07p045556 Quercus lobata HOM05D007104 ORTHO05D008851 3.7e-155 553.1 861 48.2
Lj1g0014647 Lotus japonicus HOM05D007104 ORTHO05D008851 1.1e-154 551.6 833 47.7
ATR0594G196 Amborella trichopoda HOM05D007104 ORTHO05D008851 1.0e-152 545.0 875 44.0
MELO3C003069.2 Cucumis melo HOM05D007104 ORTHO05D008851 1.3e-152 544.7 835 44.7
TPR.G36926 Trifolium pratense HOM05D007104 ORTHO05D008851 5.5e-151 539.3 752 47.6
Psat3g045920 Pisum sativum HOM05D007104 ORTHO05D008851 1.2e-150 538.1 776 48.3
CANSAT80G1630 Cannabis sativa HOM05D007104 ORTHO05D008851 3.9e-149 533.1 824 46.5
Medtr7g100550 Medicago truncatula HOM05D007104 ORTHO05D008851 8.8e-149 531.9 751 49.1
Glyma.19G177700 Glycine max HOM05D007104 ORTHO05D008851 5.7e-148 529.3 816 46.6
Phvul.001G174000 Phaseolus vulgaris HOM05D007104 ORTHO05D008851 9.7e-148 528.5 817 46.6
Ca_08818_v3 Cicer arietinum L. HOM05D007104 ORTHO05D008851 2.2e-147 527.3 751 47.1
FAN09G1206 Fragaria x ananassa HOM05D007104 ORTHO05D008851 8.2e-147 525.4 824 47.2
PSO339G1446 Papaver somniferum HOM05D007104 ORTHO05D008851 3.1e-146 523.5 826 46.9
Lalb_Chr20g0112911 Lupinus albus HOM05D007104 ORTHO05D008851 4.5e-145 519.6 757 47.3
PSO384G2670 Papaver somniferum HOM05D007104 ORTHO05D008851 1.7e-144 517.7 824 46.4
CsaV3_4G024380 Cucumis sativus L. HOM05D007104 ORTHO05D008851 3.0e-141 506.9 821 46.3
MBI05_g33311_MAGBIO Magnolia biondii HOM05D007104 ORTHO05D008851 1.5e-140 504.6 806 46.4
TWI18G0316 Tripterygium wilfordii HOM05D007104 ORTHO05D008851 9.7e-140 501.9 821 44.6
AUR62042917 Chenopodium quinoa HOM05D007104 ORTHO05D008851 1.4e-138 498.0 791 42.9
Os03g0284900 Oryza sativa ssp. japonica HOM05D007104 ORTHO05D008851 6.5e-136 489.2 823 43.6
ClCG04G008780 Citrullus lanatus HOM05D007104 ORTHO05D008851 1.9e-135 487.6 819 44.2
VMungo1383G0332 Vigna mungo HOM05D007104 ORTHO05D008851 8.0e-134 482.3 812 44.1
HPP92_003603 Vanilla planifolia HOM05D007104 ORTHO05D008851 3.4e-124 450.3 758 43.7
Eucgr.K03203 Eucalyptus grandis HOM05D007104 ORTHO05D008851 1.5e-111 408.3 606 50.7
SEGI_02163 Sequoiadendron giganteum HOM05D007104 ORTHO05D008851 4.4e-100 370.2 822 38.4
Aqoxy2G01885 Aquilegia oxysepala HOM05D007104 ORTHO05D008851 1.1e-95 355.5 490 53.1
Oeu034822.1 Olea europaea HOM05D007104 ORTHO05D008851 1.5e-95 355.1 402 49.8
Zm00001eb397200 Zea mays HOM05D007104 ORTHO05D008851 5.4e-82 310.1 672 32.1
Glyma.03G177000 Glycine max HOM05D007104 ORTHO05D008851 9.6e-79 299.3 537 45.6
Pp3c22_3070 Physcomitrium patens HOM05D007104 ORTHO05D008851 3.8e-67 260.8 801 34.2
Pp3c21_12360 Physcomitrium patens HOM05D007104 ORTHO05D008851 2.5e-63 248.1 883 31.9
Cpa.g.sc45.26 Carica papaya HOM05D007104 ORTHO05D008851 6.2e-62 243.4 547 42.6
Atru.chr8.2537 Acer truncatum HOM05D007104 ORTHO05D008851 3.4e-60 237.7 417 44.8
Atru.chr8.2538 Acer truncatum HOM05D007104 ORTHO05D008851 2.9e-59 234.6 281 49.5
unitig_16.g32855 Utricularia gibba HOM05D007104 ORTHO05D008851 4.9e-59 233.8 292 47.9
Mapoly0039s0098 Marchantia polymorpha HOM05D007104 ORTHO05D008851 3.9e-56 224.2 836 31.7
CARHR210500 Cardamine hirsuta HOM05D007104 ORTHO05D008851 4.8e-46 190.7 242 47.1
SMO351G0222 Selaginella moellendorffii HOM05D007104 ORTHO05D008851 4.8e-46 190.7 538 34.4
Oeu027653.1 Olea europaea HOM05D007104 ORTHO05D008851 6.5e-43 180.3 173 54.9
CDE02G1389 Ceratophyllum demersum HOM05D007104 ORTHO05D008851 8.5e-35 153.3 331 32.6
Hma1.2p1_0111F.1_g053720 Hydrangea macrophylla HOM05D007104 ORTHO05D008851 1.1e-21 109.8 133 49.6
Pp3c22_3080 Physcomitrium patens HOM05D007104 ORTHO05D008851 5.9e-20 104.0 345 28.4
Rhsim04G0181000 Rhododendron simsii HOM05D007104 ORTHO05D008851 8.0e-17 93.6 103 45.6
RcHm_v2.0_Chr3g0468351 Rosa chinensis HOM05D007104 ORTHO05D008851 2.7e-12 78.6 74 55.4
TWI34G1038 Tripterygium wilfordii HOM05D007570 ORTHO05D009365 9.8e-07 60.1 154 26.6
Dinv29518 Davidia involucrata HOM05D001779 ORTHO05D001753 4.9e-06 57.8 124 28.2
Aqoxy5G04292 Aquilegia oxysepala HOM05D006156 ORTHO05D007699 8.3e-06 57.0 116 28.4
CBR_g39241 Chara braunii HOM05D007104 ORTHO05D008851 8.3e-06 57.0 252 24.2


User provided reference genes

Program Settings