Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow3G0974 Salvia bowleyana HOM05D004076 ORTHO05D004606 0.0e+00 1676.0 865 100.0
Migut.B01848 Erythranthe guttata HOM05D004076 ORTHO05D004606 1.6e-142 511.1 703 43.7
MSTRG.28249 Avicennia marina HOM05D004076 ORTHO05D004606 4.6e-129 466.5 833 41.1
SGA_v2.0_scaffold24G10696 Striga asiatica HOM05D004076 ORTHO05D004606 2.0e-124 451.1 712 42.0
Oeu032957.2 Olea europaea HOM05D004076 ORTHO05D004606 6.4e-123 446.0 730 39.9
SalBow5G1086 Salvia bowleyana HOM05D004076 ORTHO05D004606 6.9e-101 372.9 973 30.9
Hma1.2p1_0639F.1_g194000 Hydrangea macrophylla HOM05D004076 ORTHO05D004606 2.4e-98 364.4 739 36.1
Actinidia39854 Actinidia chinensis HOM05D004076 ORTHO05D004606 2.0e-84 318.2 723 32.6
Migut.N01559 Erythranthe guttata HOM05D004076 ORTHO05D004606 2.0e-84 318.2 697 33.1
Cfa015154 Carpinus fangiana HOM05D004076 ORTHO05D004606 8.4e-83 312.8 720 32.8
GSVIVG01010749001 Vitis vinifera HOM05D004076 ORTHO05D004606 6.0e-81 306.6 728 33.2
Actinidia11304 Actinidia chinensis HOM05D004076 ORTHO05D004606 7.4e-79 299.7 707 33.2
RcHm_v2.0_Chr4g0407011 Rosa chinensis HOM05D004076 ORTHO05D004606 1.6e-78 298.5 741 31.7
Rhsim02G0076700 Rhododendron simsii HOM05D004076 ORTHO05D004606 8.2e-78 296.2 764 30.4
MD04G1007700 Malus domestica HOM05D004076 ORTHO05D004606 4.1e-77 293.9 743 31.2
Lj3g0002927 Lotus japonicus HOM05D004076 ORTHO05D004606 1.5e-76 292.0 749 30.0
Lalb_Chr14g0372441 Lupinus albus HOM05D004076 ORTHO05D004606 2.0e-76 291.6 711 32.3
Medtr2g098830 Medicago truncatula HOM05D004076 ORTHO05D004606 3.4e-76 290.8 722 31.0
Dinv44195 Davidia involucrata HOM05D004076 ORTHO05D004606 8.4e-75 286.2 702 31.6
Duzib212G0448 Durio zibethinus HOM05D004076 ORTHO05D004606 8.4e-75 286.2 720 31.4
Thecc.04G186100 Theobroma cacao HOM05D004076 ORTHO05D004606 1.1e-74 285.8 727 30.4
Lalb_Chr01g0003201 Lupinus albus HOM05D004076 ORTHO05D004606 4.2e-74 283.9 729 30.6
Medtr4g067090 Medicago truncatula HOM05D004076 ORTHO05D004606 7.2e-74 283.1 718 29.9
Cc03_g11440 Coffea canephora HOM05D004076 ORTHO05D004606 9.3e-74 282.7 298 49.7
TAR633G1822 Trochodendron aralioides HOM05D004076 ORTHO05D004606 9.3e-74 282.7 676 32.0
Potri.007G127800 Populus trichocarpa HOM05D004076 ORTHO05D004606 1.6e-73 282.0 724 31.4
Ca_01262_v3 Cicer arietinum L. HOM05D004076 ORTHO05D004606 2.1e-73 281.6 717 31.4
Nn1g09697 Nelumbo nucifera HOM05D004076 ORTHO05D004606 7.9e-73 279.6 714 32.1
FvH4_4g10700 Fragaria vesca HOM05D004076 ORTHO05D004606 1.3e-72 278.9 757 30.5
FAN07G2191 Fragaria x ananassa HOM05D004076 ORTHO05D004606 5.1e-72 276.9 762 30.1
QL10p048538 Quercus lobata HOM05D004076 ORTHO05D004606 6.7e-72 276.6 757 30.6
Lj3A198G30 Lonicera japonica HOM05D004076 ORTHO05D004606 8.7e-72 276.2 699 30.5
PGR031G3172 Punica granatum HOM05D004076 ORTHO05D004606 8.7e-72 276.2 696 30.6
TPR.G35423 Trifolium pratense HOM05D004076 ORTHO05D004606 4.3e-71 273.9 712 30.3
MELO3C011646.2 Cucumis melo HOM05D004076 ORTHO05D004606 7.4e-71 273.1 718 32.3
Phvul.011G055000 Phaseolus vulgaris HOM05D004076 ORTHO05D004606 9.7e-71 272.7 735 29.3
Manes.04G041450 Manihot esculenta HOM05D004076 ORTHO05D004606 2.8e-70 271.2 710 31.3
arahy.Tifrunner.gnm1.ann1.68X0LC Arachis hypogaea HOM05D004076 ORTHO05D004606 6.3e-70 270.0 712 30.5
EL10Ac3g05923 Beta vulgaris HOM05D004076 ORTHO05D004606 1.4e-69 268.9 796 29.1
arahy.Tifrunner.gnm1.ann1.33ZKBH Arachis hypogaea HOM05D004076 ORTHO05D004606 3.4e-68 264.2 705 29.5
VMungo1127G1790 Vigna mungo HOM05D004076 ORTHO05D004606 2.9e-67 261.2 732 27.9
Ca_20781_v3 Cicer arietinum L. HOM05D004076 ORTHO05D004606 1.1e-66 259.2 314 42.0
Psat7g213720 Pisum sativum HOM05D004076 ORTHO05D004606 1.4e-66 258.8 313 42.8
TPR.G34235 Trifolium pratense HOM05D004076 ORTHO05D004606 1.9e-66 258.5 309 42.7
Gorai.006G227200 Gossypium raimondii HOM05D004076 ORTHO05D004606 2.5e-66 258.1 710 29.9
Glyma.15G030500 Glycine max HOM05D004076 ORTHO05D004606 9.4e-66 256.1 314 43.6
Sed0018268 Sechium edule HOM05D004076 ORTHO05D004606 9.4e-66 256.1 714 30.3
Gohir.A09G209900 Gossypium hirsutum HOM05D004076 ORTHO05D004606 1.2e-65 255.8 714 29.8
FAN17G1176 Fragaria x ananassa HOM05D004076 ORTHO05D004606 3.6e-65 254.2 743 30.1
TWI63G0993 Tripterygium wilfordii HOM05D004076 ORTHO05D004606 1.0e-64 252.7 681 30.5
Atru.chr3.1528 Acer truncatum HOM05D004076 ORTHO05D004606 1.8e-64 251.9 649 31.7
arahy.Tifrunner.gnm1.ann1.KU5ADZ Arachis hypogaea HOM05D004076 ORTHO05D004606 1.8e-64 251.9 670 30.3
Prupe.1G191700 Prunus persica HOM05D004076 ORTHO05D004606 1.8e-64 251.9 655 30.5
Peaxi162Scf00297g01124 Petunia axillaris HOM05D004076 ORTHO05D004606 6.7e-64 250.0 314 43.3
CANSAT78G1401 Cannabis sativa HOM05D004076 ORTHO05D004606 8.8e-64 249.6 713 28.1
Sabra17G0020100 Salix brachista HOM05D004076 ORTHO05D004606 8.8e-64 249.6 767 29.1
Sopen07g034480 Solanum pennellii HOM05D004076 ORTHO05D004606 8.8e-64 249.6 330 41.5
CiPaw.01G101100 Carya illinoinensis HOM05D004076 ORTHO05D004606 1.1e-63 249.2 306 41.8
arahy.Tifrunner.gnm1.ann1.ZR8I8Y Arachis hypogaea HOM05D004076 ORTHO05D004606 2.5e-63 248.1 314 42.0
Ciclev10020801m.g Citrus clementina HOM05D004076 ORTHO05D004606 3.3e-63 247.7 327 44.6
Aqoxy7G03601 Aquilegia oxysepala HOM05D004076 ORTHO05D004606 6.3e-62 243.4 792 28.7
CsaV3_6G003850 Cucumis sativus L. HOM05D004076 ORTHO05D004606 6.3e-62 243.4 338 41.4
Aqoxy7G02132 Aquilegia oxysepala HOM05D004076 ORTHO05D004606 1.1e-61 242.7 779 28.9
AUR62002294 Chenopodium quinoa HOM05D004076 ORTHO05D004606 1.1e-61 242.7 298 41.9
Ciclev10020610m.g Citrus clementina HOM05D004076 ORTHO05D004606 2.4e-61 241.5 307 45.0
Psat1g007120 Pisum sativum HOM05D004076 ORTHO05D004606 4.1e-61 240.7 308 42.2
AL1G15900 Arabidopsis lyrata HOM05D004076 ORTHO05D004606 9.1e-61 239.6 692 26.6
MBI08_g23493_MAGBIO Magnolia biondii HOM05D004076 ORTHO05D004606 1.5e-60 238.8 312 42.3
FAN12G0055 Fragaria x ananassa HOM05D004076 ORTHO05D004606 2.0e-60 238.4 732 29.5
Lj3g0000298 Lotus japonicus HOM05D004076 ORTHO05D004606 2.0e-60 238.4 683 30.0
Carub.0001s0531 Capsella rubella HOM05D004076 ORTHO05D004606 3.4e-60 237.7 686 28.9
Medtr2g098710 Medicago truncatula HOM05D004076 ORTHO05D004606 3.4e-60 237.7 335 38.8
FAN12G1510 Fragaria x ananassa HOM05D004076 ORTHO05D004606 5.9e-60 236.9 757 28.9
Sopen03g040670 Solanum pennellii HOM05D004076 ORTHO05D004606 5.9e-60 236.9 710 28.5
Medtr2g098720 Medicago truncatula HOM05D004076 ORTHO05D004606 7.7e-60 236.5 330 39.1
Aqoxy7G02134 Aquilegia oxysepala HOM05D004076 ORTHO05D004606 1.0e-59 236.1 300 42.3
Thhalv10007042m.g Eutrema salsugineum HOM05D004076 ORTHO05D004606 1.3e-59 235.7 683 27.2
Medtr2g098730 Medicago truncatula HOM05D004076 ORTHO05D004606 1.7e-59 235.3 303 40.3
DCAR_031879 Daucus carota HOM05D004076 ORTHO05D004606 8.5e-59 233.0 714 29.3
Eucgr.H00375 Eucalyptus grandis HOM05D004076 ORTHO05D004606 1.4e-58 232.3 722 27.1
Solyc03g121850.3 Solanum lycopersicum HOM05D004076 ORTHO05D004606 1.9e-58 231.9 704 28.0
Nitab4.5_0000313g0050 Nicotiana tabacum HOM05D004076 ORTHO05D004606 3.2e-58 231.1 657 30.1
PSO832G3772 Papaver somniferum HOM05D004076 ORTHO05D004606 4.2e-58 230.7 726 29.8
CARHR005480 Cardamine hirsuta HOM05D004076 ORTHO05D004606 5.5e-58 230.3 692 28.5
DCAR_027539 Daucus carota HOM05D004076 ORTHO05D004606 2.1e-57 228.4 711 29.3
Sabra07G0104100 Salix brachista HOM05D004076 ORTHO05D004606 2.1e-57 228.4 684 30.1
Aa31LG1G8350 Aethionema arabicum HOM05D004076 ORTHO05D004606 2.7e-57 228.0 704 28.6
Peaxi162Scf00297g01121 Petunia axillaris HOM05D004076 ORTHO05D004606 7.9e-57 226.5 306 42.5
Lsat_1_v5_gn_3_110821 Lactuca sativa HOM05D004076 ORTHO05D004606 1.0e-56 226.1 712 27.0
BcaC07g42099 Brassica carinata HOM05D004076 ORTHO05D004606 3.0e-56 224.6 346 36.7
Haze_01517 Corylus avellana HOM05D004076 ORTHO05D004606 8.8e-56 223.0 252 47.2
Eucgr.G00183 Eucalyptus grandis HOM05D004076 ORTHO05D004606 3.3e-55 221.1 313 39.3
Gohir.D09G203332 Gossypium hirsutum HOM05D004076 ORTHO05D004606 9.7e-55 219.5 305 40.0
ECA240G0221 Erigeron canadensis HOM05D004076 ORTHO05D004606 2.2e-54 218.4 771 28.5
COL.COLO4_33468 Corchorus olitorius HOM05D004076 ORTHO05D004606 2.8e-54 218.0 296 41.9
Eucgr.G00179 Eucalyptus grandis HOM05D004076 ORTHO05D004606 6.3e-54 216.9 321 37.7
BolC8t52680H Brassica oleracea HOM05D004076 ORTHO05D004606 1.1e-53 216.1 303 39.9
THA.LOC104826195 Tarenaya hassleriana HOM05D004076 ORTHO05D004606 1.1e-53 216.1 725 25.1
HanXRQChr03g0090111 Helianthus annuus HOM05D004076 ORTHO05D004606 1.8e-53 215.3 792 29.9
Ciclev10023338m.g Citrus clementina HOM05D004076 ORTHO05D004606 4.1e-53 214.2 277 44.0
A09p67230 Brassica napus HOM05D004076 ORTHO05D004606 9.1e-53 213.0 294 40.1
ATR0686G221 Amborella trichopoda HOM05D004076 ORTHO05D004606 1.6e-52 212.2 299 41.8
AT1G05950 Arabidopsis thaliana HOM05D004076 ORTHO05D004606 2.6e-52 211.5 291 40.2
C08p51520 Brassica napus HOM05D004076 ORTHO05D004606 1.0e-51 209.5 303 38.3
BraA09t42056Z Brassica rapa HOM05D004076 ORTHO05D004606 5.0e-51 207.2 294 39.1
Eucgr.G00184 Eucalyptus grandis HOM05D004076 ORTHO05D004606 1.1e-50 206.1 299 38.5
Lj6A56T29 Lonicera japonica HOM05D004076 ORTHO05D004606 5.2e-48 197.2 264 37.1
Medtr0002s1280 Medicago truncatula HOM05D004076 ORTHO05D004606 5.2e-48 197.2 298 37.6
Nitab4.5_0002475g0040 Nicotiana tabacum HOM05D004076 ORTHO05D004606 8.8e-48 196.4 739 26.7
ClCG08G004480 Citrullus lanatus HOM05D004076 ORTHO05D004606 1.5e-47 195.7 879 26.5
Eucgr.G00188 Eucalyptus grandis HOM05D004076 ORTHO05D004606 2.0e-47 195.3 257 40.5
Glyma.12G053033 Glycine max HOM05D004076 ORTHO05D004606 2.6e-47 194.9 275 38.2
Zm00001eb318340 Zea mays HOM05D004076 ORTHO05D004606 7.7e-44 183.3 700 27.6
PGSC0003DMG400002575 Solanum tuberosum HOM05D004076 ORTHO05D004606 2.9e-43 181.4 283 38.9
Nitab4.5_0009641g0050 Nicotiana tabacum HOM05D004076 ORTHO05D004606 4.7e-41 174.1 252 38.1
Sc11g0003780 Simmondsia chinensis HOM05D004076 ORTHO05D004606 2.3e-40 171.8 211 40.8
Nitab4.5_0005003g0040 Nicotiana tabacum HOM05D004076 ORTHO05D004606 5.2e-40 170.6 253 37.9
Eucgr.G00171 Eucalyptus grandis HOM05D004076 ORTHO05D004606 8.3e-38 163.3 217 40.1
Medtr2g098770 Medicago truncatula HOM05D004076 ORTHO05D004606 7.7e-36 156.8 244 38.1
Sp1g04770 Schrenkiella parvula HOM05D004076 ORTHO05D004606 2.2e-35 155.2 219 39.3
CDE08G1584 Ceratophyllum demersum HOM05D004076 ORTHO05D004606 3.4e-31 141.4 814 24.9
Ciclev10024150m.g Citrus clementina HOM05D004076 ORTHO05D004606 6.6e-27 127.1 177 43.5
Ciclev10024444m.g Citrus clementina HOM05D004076 ORTHO05D004606 6.6e-27 127.1 177 43.5
SEGI_36759 Sequoiadendron giganteum HOM05D004076 ORTHO05D004606 2.8e-25 121.7 187 38.0
Os09g0514500 Oryza sativa ssp. japonica HOM05D004076 ORTHO05D004606 3.6e-25 121.3 164 45.1
COL.COLO4_20907 Corchorus olitorius HOM05D004076 ORTHO05D004606 3.4e-23 114.8 628 23.1
Cpa.g.sc9.266 Carica papaya HOM05D004076 ORTHO05D004606 4.9e-22 110.9 150 39.3
Lj3g0024562 Lotus japonicus HOM05D004076 ORTHO05D004606 2.4e-21 108.6 152 36.2
Sed0002856 Sechium edule HOM05D004076 ORTHO05D004606 4.6e-20 104.4 216 32.9
Glyma.13G343800 Glycine max HOM05D004076 ORTHO05D004606 4.3e-18 97.8 117 39.3
Lj3g0014411 Lotus japonicus HOM05D004076 ORTHO05D004606 1.0e-16 93.2 186 32.3
Glyma.11G128400 Glycine max HOM05D004076 ORTHO05D004606 3.4e-15 88.2 444 23.0
Lj8A15T44 Lonicera japonica HOM05D004076 ORTHO05D004606 3.7e-14 84.7 89 42.7
FAN22G1497 Fragaria x ananassa HOM05D004076 ORTHO05D004606 8.6e-11 73.6 120 40.0
AUR62015396 Chenopodium quinoa HOM05D004076 ORTHO05D004606 2.5e-10 72.0 162 29.0
Migut.C00084 Erythranthe guttata HOM05D042229 ORTHO05D035173 7.3e-10 70.5 68 48.5
Migut.E00887 Erythranthe guttata HOM05D042229 ORTHO05D035173 7.3e-10 70.5 61 55.7
Ciclev10022885m.g Citrus clementina HOM05D004076 ORTHO05D004606 1.1e-08 66.6 97 37.1
SHI23539 Sapria himalayana HOM05D004076 ORTHO05D004606 1.1e-08 66.6 77 48.1
Lj6A56G23 Lonicera japonica HOM05D004076 ORTHO05D004606 8.9e-08 63.5 66 45.5
SalBow3G3959 Salvia bowleyana HOM05D000446 ORTHO05D358861 2.6e-07 62.0 58 60.3
Peaxi162Scf00297g01127 Petunia axillaris HOM05D004076 ORTHO05D004606 5.8e-07 60.8 70 44.3
Hund12007 Selenicereus undatus HOM05D004076 ORTHO05D004606 2.9e-06 58.5 118 34.7


User provided reference genes

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