Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow3G0715 Salvia bowleyana HOM05D004768 ORTHO05D005812 5.6e-178 627.5 311 100.0
SalBow1G7826 Salvia bowleyana HOM05D004768 ORTHO05D005812 2.7e-63 246.5 274 52.6
SalBow1G6114 Salvia bowleyana HOM05D010805 ORTHO05D362639 1.1e-29 134.8 77 89.6
SalBow5G0073 Salvia bowleyana HOM05D000080 ORTHO05D001194 4.3e-21 106.3 89 70.8
MSTRG.26639 Avicennia marina HOM05D004768 ORTHO05D005812 7.3e-21 105.5 107 57.0
SalBow1G5389 Salvia bowleyana HOM05D010805 ORTHO05D358595 4.8e-20 102.8 78 74.4
Migut.L01777 Erythranthe guttata HOM05D004768 ORTHO05D005812 8.1e-20 102.1 107 56.1
SalBow7G2666 Salvia bowleyana HOM05D004768 ORTHO05D005812 2.4e-19 100.5 104 54.8
SalBow7G1933 Salvia bowleyana HOM05D001898 ORTHO05D002580 2.6e-18 97.1 64 78.1
MSTRG.10364 Avicennia marina HOM05D004768 ORTHO05D005812 2.2e-17 94.0 107 52.3
Nitab4.5_0003550g0050 Nicotiana tabacum HOM05D004768 ORTHO05D005812 2.9e-17 93.6 107 53.3
SGA_v2.0_scaffold184G39961 Striga asiatica HOM05D004768 ORTHO05D005812 2.9e-17 93.6 107 50.5
TWI74G0982 Tripterygium wilfordii HOM05D004768 ORTHO05D005812 6.4e-17 92.4 90 56.7
SalBow5G5325 Salvia bowleyana HOM05D010805 ORTHO05D355460 1.1e-16 91.7 76 64.5
unitig_746.g26778 Utricularia gibba HOM05D004768 ORTHO05D005812 1.1e-16 91.7 86 55.8
TWI77G0792 Tripterygium wilfordii HOM05D004768 ORTHO05D005812 1.4e-16 91.3 90 55.6
TWI53G2067 Tripterygium wilfordii HOM05D004768 ORTHO05D005812 1.9e-16 90.9 123 45.5
Rhsim03G0075500 Rhododendron simsii HOM05D004768 ORTHO05D005812 3.2e-16 90.1 90 53.3
Cc06_g05720 Coffea canephora HOM05D004768 ORTHO05D005812 4.2e-16 89.7 90 52.2
Dinv31684 Davidia involucrata HOM05D004768 ORTHO05D005812 4.2e-16 89.7 90 55.6
Oeu056927.1 Olea europaea HOM05D004768 ORTHO05D005812 4.2e-16 89.7 108 51.9
SalBow1G1638 Salvia bowleyana HOM05D010805 ORTHO05D355332 9.3e-16 88.6 76 67.1
CSS0047457 Camellia sinensis var. sinensis HOM05D004768 ORTHO05D005812 1.2e-15 88.2 107 48.6
Nitab4.5_0001107g0160 Nicotiana tabacum HOM05D004768 ORTHO05D005812 1.2e-15 88.2 107 50.5
Oeu047201.1 Olea europaea HOM05D004768 ORTHO05D005812 1.2e-15 88.2 90 53.3
Dinv21211 Davidia involucrata HOM05D004768 ORTHO05D005812 2.7e-15 87.0 90 52.2
Sopen09g029240 Solanum pennellii HOM05D004768 ORTHO05D005812 3.5e-15 86.7 107 49.5
ATR0776G063 Amborella trichopoda HOM05D004768 ORTHO05D005812 4.6e-15 86.3 90 52.2
SalBow3G0257 Salvia bowleyana HOM05D010805 ORTHO05D355923 4.6e-15 86.3 79 62.0
Sed0028141 Sechium edule HOM05D004768 ORTHO05D005812 4.6e-15 86.3 89 52.8
TAR636G3610 Trochodendron aralioides HOM05D004768 ORTHO05D005812 4.6e-15 86.3 93 53.8
SalBow2G0495 Salvia bowleyana HOM05D010805 ORTHO05D356449 6.0e-15 85.9 75 66.7
SalBow3G1372 Salvia bowleyana HOM05D010805 ORTHO05D359278 6.0e-15 85.9 77 62.3
CANSAT78G2462 Cannabis sativa HOM05D004768 ORTHO05D005812 7.9e-15 85.5 89 53.9
Hma1.2p1_0084F.1_g043770 Hydrangea macrophylla HOM05D004768 ORTHO05D005812 7.9e-15 85.5 87 52.9
CsaV3_3G037260 Cucumis sativus L. HOM05D004768 ORTHO05D005812 1.0e-14 85.1 89 52.8
Eucgr.K02044 Eucalyptus grandis HOM05D004768 ORTHO05D005812 1.8e-14 84.3 87 50.6
COL.COLO4_29739 Corchorus olitorius HOM05D004768 ORTHO05D005812 2.3e-14 84.0 91 49.5
DCAR_009163 Daucus carota HOM05D004768 ORTHO05D005812 2.3e-14 84.0 90 50.0
Solyc09g074400.3 Solanum lycopersicum HOM05D004768 ORTHO05D005812 3.0e-14 83.6 107 48.6
Actinidia05433 Actinidia chinensis HOM05D004768 ORTHO05D005812 3.9e-14 83.2 86 52.3
ClCG10G018990 Citrullus lanatus HOM05D004768 ORTHO05D005812 3.9e-14 83.2 89 51.7
PSO339G5247 Papaver somniferum HOM05D004768 ORTHO05D005812 3.9e-14 83.2 90 51.1
PSO384G2514 Papaver somniferum HOM05D004768 ORTHO05D005812 3.9e-14 83.2 90 51.1
Thecc.05G088700 Theobroma cacao HOM05D004768 ORTHO05D005812 3.9e-14 83.2 90 50.0
TAR633G0463 Trochodendron aralioides HOM05D004768 ORTHO05D005812 3.9e-14 83.2 93 51.6
Cpa.g.sc5.22 Carica papaya HOM05D004768 ORTHO05D005812 6.7e-14 82.4 91 51.6
Ciclev10012077m.g Citrus clementina HOM05D004768 ORTHO05D005812 6.7e-14 82.4 90 51.1
PGSC0003DMG400016841 Solanum tuberosum HOM05D004768 ORTHO05D005812 6.7e-14 82.4 107 47.7
Atru.chr8.1546 Acer truncatum HOM05D004768 ORTHO05D005812 8.7e-14 82.0 90 48.9
AUR62017616 Chenopodium quinoa HOM05D004768 ORTHO05D005812 8.7e-14 82.0 86 52.3
MELO3C009471.2 Cucumis melo HOM05D004768 ORTHO05D005812 8.7e-14 82.0 89 50.6
Gohir.D01G195900 Gossypium hirsutum HOM05D004768 ORTHO05D005812 8.7e-14 82.0 90 48.9
SalBow5G0793 Salvia bowleyana HOM05D010805 ORTHO05D354500 8.7e-14 82.0 74 63.5
Ca_09003_v3 Cicer arietinum L. HOM05D004768 ORTHO05D005812 1.1e-13 81.6 92 48.9
Manes.09G055600 Manihot esculenta HOM05D004768 ORTHO05D005812 1.1e-13 81.6 107 46.7
Gohir.A01G206500 Gossypium hirsutum HOM05D004768 ORTHO05D005812 1.5e-13 81.3 90 48.9
Gorai.002G240100 Gossypium raimondii HOM05D004768 ORTHO05D005812 1.5e-13 81.3 90 48.9
Potri.002G212800 Populus trichocarpa HOM05D004768 ORTHO05D005812 1.5e-13 81.3 106 46.2
PGR142G0725 Punica granatum HOM05D004768 ORTHO05D005812 1.5e-13 81.3 87 49.4
MD14G1022600 Malus domestica HOM05D004768 ORTHO05D005812 1.9e-13 80.9 87 51.7
Manes.08G025000 Manihot esculenta HOM05D004768 ORTHO05D005812 1.9e-13 80.9 107 45.8
Sabra16G0123600 Salix brachista HOM05D000102 ORTHO05D005812 1.9e-13 80.9 107 45.8
MD12G1035900 Malus domestica HOM05D004768 ORTHO05D005812 2.5e-13 80.5 87 52.9
Sabra16G0131600 Salix brachista HOM05D004768 ORTHO05D000138 3.3e-13 80.1 107 45.8
Sc02g0000880 Simmondsia chinensis HOM05D004768 ORTHO05D005812 3.3e-13 80.1 90 52.2
Lj1g0007409 Lotus japonicus HOM05D004768 ORTHO05D005812 4.3e-13 79.7 92 46.7
Duzib128G0567 Durio zibethinus HOM05D004768 ORTHO05D005812 5.6e-13 79.3 90 47.8
CDE02G3328 Ceratophyllum demersum HOM05D004768 ORTHO05D005812 7.4e-13 79.0 93 48.4
Medtr7g104550 Medicago truncatula HOM05D004768 ORTHO05D005812 7.4e-13 79.0 92 47.8
THA.LOC104816391 Tarenaya hassleriana HOM05D004768 ORTHO05D005812 7.4e-13 79.0 108 46.3
TPR.G19532 Trifolium pratense HOM05D004768 ORTHO05D005812 7.4e-13 79.0 87 49.4
Psat3g033480 Pisum sativum HOM05D004768 ORTHO05D005812 9.6e-13 78.6 92 47.8
Peaxi162Scf00290g00062 Petunia axillaris HOM05D004768 ORTHO05D005812 1.3e-12 78.2 104 49.0
Potri.001G221000 Populus trichocarpa HOM05D004768 ORTHO05D005812 1.3e-12 78.2 107 45.8
Lsat_1_v5_gn_8_77061 Lactuca sativa HOM05D004768 ORTHO05D005812 2.1e-12 77.4 88 50.0
PSO229G0127 Papaver somniferum HOM05D004768 ORTHO05D005812 2.1e-12 77.4 90 48.9
SalBow1G1784 Salvia bowleyana HOM05D010805 ORTHO05D015284 2.1e-12 77.4 64 70.3
AL4G18210 Arabidopsis lyrata HOM05D004768 ORTHO05D005812 2.8e-12 77.0 91 48.4
Aa31LG5G9700 Aethionema arabicum HOM05D004768 ORTHO05D005812 3.7e-12 76.6 102 46.1
AT2G26060 Arabidopsis thaliana HOM05D004768 ORTHO05D005812 3.7e-12 76.6 91 48.4
FAN02G2744 Fragaria x ananassa HOM05D004768 ORTHO05D005812 3.7e-12 76.6 104 43.3
HanXRQChr05g0133111 Helianthus annuus HOM05D004768 ORTHO05D005812 3.7e-12 76.6 88 51.1
Sed0006419 Sechium edule HOM05D004768 ORTHO05D005812 3.7e-12 76.6 106 47.2
VMungo1383G3473 Vigna mungo HOM05D004768 ORTHO05D005812 3.7e-12 76.6 87 49.4
Aqoxy2G01203 Aquilegia oxysepala HOM05D004768 ORTHO05D005812 8.1e-12 75.5 89 50.6
Phvul.001G190000 Phaseolus vulgaris HOM05D004768 ORTHO05D005812 8.1e-12 75.5 87 48.3
Prupe.7G110600 Prunus persica HOM05D004768 ORTHO05D005812 8.1e-12 75.5 89 50.6
Sp4g05920 Schrenkiella parvula HOM05D004768 ORTHO05D005812 1.1e-11 75.1 91 47.3
Thhalv10002028m.g Eutrema salsugineum HOM05D004768 ORTHO05D005812 1.4e-11 74.7 104 45.2
Carub.0004s0588 Capsella rubella HOM05D004768 ORTHO05D005812 1.8e-11 74.3 91 47.3
Aa31sc210G50 Aethionema arabicum HOM05D004768 ORTHO05D005812 2.4e-11 73.9 108 44.4
Lsat_1_v5_gn_5_164801 Lactuca sativa HOM05D004768 ORTHO05D005812 2.4e-11 73.9 104 49.0
RcHm_v2.0_Chr3g0473611 Rosa chinensis HOM05D004768 ORTHO05D005812 2.4e-11 73.9 104 44.2
BcaB08g35238 Brassica carinata HOM05D004768 ORTHO05D005812 4.0e-11 73.2 90 46.7
SalBow6G2775 Salvia bowleyana HOM05D010805 ORTHO05D355952 4.0e-11 73.2 73 61.6
AagrBONN_evm.TU.Sc2ySwM_344.1733 Anthoceros agrestis HOM05D004768 ORTHO05D005812 5.3e-11 72.8 90 44.4
CDE08G0455 Ceratophyllum demersum HOM05D004768 ORTHO05D005812 5.3e-11 72.8 87 47.1
FvH4_6g18650 Fragaria vesca HOM05D004768 ORTHO05D005812 5.3e-11 72.8 104 43.3
SEGI_40271 Sequoiadendron giganteum HOM05D004768 ORTHO05D005812 5.3e-11 72.8 91 48.4
Ah.01g002000 Amaranthus hybridus HOM05D000289 ORTHO05D000208 6.9e-11 72.4 86 50.0
FAN05G3800 Fragaria x ananassa HOM05D004768 ORTHO05D005812 6.9e-11 72.4 104 43.3
FAN05G5395 Fragaria x ananassa HOM05D004768 ORTHO05D005812 6.9e-11 72.4 104 43.3
FAN14G4330 Fragaria x ananassa HOM05D004768 ORTHO05D005812 6.9e-11 72.4 104 43.3
vmacro07406 Vaccinium macrocarpon HOM05D004768 ORTHO05D005812 6.9e-11 72.4 67 53.7
EL10Ac4g08441 Beta vulgaris HOM05D004768 ORTHO05D005812 9.0e-11 72.0 99 48.5
FAN09G1393 Fragaria x ananassa HOM05D004768 ORTHO05D005812 9.0e-11 72.0 104 43.3
Glyma.03G195400 Glycine max HOM05D004768 ORTHO05D005812 9.0e-11 72.0 87 46.0
Lalb_Chr20g0111731 Lupinus albus HOM05D004768 ORTHO05D005812 9.0e-11 72.0 88 47.7
SalBow6G6359 Salvia bowleyana HOM05D010805 ORTHO05D362279 9.0e-11 72.0 76 60.5
Lj2A136G54 Lonicera japonica HOM05D004768 ORTHO05D005812 1.2e-10 71.6 109 45.0
Os07g0252000 Oryza sativa ssp. japonica HOM05D004768 ORTHO05D005812 1.2e-10 71.6 87 44.8
HanXRQChr01g0001951 Helianthus annuus HOM05D004768 ORTHO05D005812 1.5e-10 71.2 88 48.9
AL7G18690 Arabidopsis lyrata HOM05D004768 ORTHO05D005812 2.0e-10 70.9 101 45.5
DCAR_020747 Daucus carota HOM05D004768 ORTHO05D005812 2.6e-10 70.5 84 44.0
Carub.0007s0749 Capsella rubella HOM05D004768 ORTHO05D005812 4.5e-10 69.7 84 47.6
HPP92_013808 Vanilla planifolia HOM05D004768 ORTHO05D005812 5.8e-10 69.3 90 45.6
SHI23990 Sapria himalayana HOM05D000002 ORTHO05D000001 1.0e-09 68.6 56 55.4
CiPaw.10G009400 Carya illinoinensis HOM05D004768 ORTHO05D005812 1.3e-09 68.2 88 45.5
CiPaw.09G013600 Carya illinoinensis HOM05D004768 ORTHO05D005812 1.7e-09 67.8 88 43.2
SalBow5G5258 Salvia bowleyana HOM05D010805 ORTHO05D360001 1.7e-09 67.8 81 54.3
GSVIVG01033839001 Vitis vinifera HOM05D004768 ORTHO05D005812 1.7e-09 67.8 59 52.5
Haze_19607 Corylus avellana HOM05D004768 ORTHO05D005812 2.9e-09 67.0 89 43.8
SalBow3G3039 Salvia bowleyana HOM05D004768 ORTHO05D356537 2.9e-09 67.0 88 45.5
arahy.Tifrunner.gnm1.ann1.F6QZS0 Arachis hypogaea HOM05D004768 ORTHO05D005812 4.9e-09 66.2 96 41.7
A08p05150 Brassica napus HOM05D004768 ORTHO05D005812 6.5e-09 65.9 91 45.1
BraA08t32532Z Brassica rapa HOM05D004768 ORTHO05D005812 6.5e-09 65.9 91 45.1
SalBow3G0210 Salvia bowleyana HOM05D004768 ORTHO05D355925 1.1e-08 65.1 55 60.0
QL07p038809 Quercus lobata HOM05D004768 ORTHO05D005812 1.4e-08 64.7 111 39.6
QL07p039071 Quercus lobata HOM05D004768 ORTHO05D005812 1.4e-08 64.7 111 39.6
Hund03983 Selenicereus undatus HOM05D004768 ORTHO05D005812 1.4e-08 64.7 87 47.1
arahy.Tifrunner.gnm1.ann1.UHNL6N Arachis hypogaea HOM05D004768 ORTHO05D005812 1.9e-08 64.3 96 39.6
SalBow5G0237 Salvia bowleyana HOM05D013979 ORTHO05D358192 5.5e-08 62.8 66 60.6
SMO239G0020 Selaginella moellendorffii HOM05D004768 ORTHO05D005812 5.5e-08 62.8 88 39.8
SalBow5G3461 Salvia bowleyana HOM05D010805 ORTHO05D356032 1.2e-07 61.6 57 63.2
Sopen09g004150 Solanum pennellii HOM05D004768 ORTHO05D005812 2.1e-07 60.8 72 47.2
BcaC07g40836 Brassica carinata HOM05D004768 ORTHO05D005812 3.5e-07 60.1 62 50.0
C08p38320 Brassica napus HOM05D004768 ORTHO05D005812 3.5e-07 60.1 62 50.0
BolC8t51408H Brassica oleracea HOM05D004768 ORTHO05D005812 3.5e-07 60.1 62 50.0
SalBow4G0811 Salvia bowleyana HOM05D010805 ORTHO05D352046 6.0e-07 59.3 28 92.9
AT4G32990 Arabidopsis thaliana HOM05D004768 ORTHO05D005812 7.9e-07 58.9 58 50.0
A09p55390 Brassica napus HOM05D004768 ORTHO05D005812 1.0e-06 58.5 62 48.4
BolC8t47355H Brassica oleracea HOM05D004768 ORTHO05D005812 1.0e-06 58.5 83 43.4
BraA09t40941Z Brassica rapa HOM05D004768 ORTHO05D005812 1.0e-06 58.5 62 48.4
SalBow5G0905 Salvia bowleyana HOM05D001898 ORTHO05D359096 1.3e-06 58.2 58 58.6
Pp3c21_14500 Physcomitrium patens HOM05D004768 ORTHO05D005812 1.8e-06 57.8 90 38.9
ECA248G2777 Erigeron canadensis HOM05D004140 ORTHO05D000452 5.1e-06 56.2 90 44.4


User provided reference genes

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