Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow3G0586 Salvia bowleyana HOM05D000300 ORTHO05D023237 7.4e-56 220.3 113 100.0
Nitab4.5_0000222g0010 Nicotiana tabacum HOM05D000300 ORTHO05D000383 1.3e-12 76.6 53 64.2
Nitab4.5_0006240g0020 Nicotiana tabacum HOM05D000300 ORTHO05D000383 1.3e-12 76.6 53 64.2
Solyc01g079320.4 Solanum lycopersicum HOM05D000300 ORTHO05D000383 1.3e-12 76.6 53 64.2
Sopen01g031100 Solanum pennellii HOM05D000300 ORTHO05D000383 1.3e-12 76.6 53 64.2
PGSC0003DMG400009016 Solanum tuberosum HOM05D000300 ORTHO05D000383 1.3e-12 76.6 53 64.2
Sed0019325 Sechium edule HOM05D000300 ORTHO05D000383 3.0e-12 75.5 67 50.7
Actinidia17908 Actinidia chinensis HOM05D000300 ORTHO05D000383 8.6e-12 73.9 92 46.7
Migut.D00073 Erythranthe guttata HOM05D000300 ORTHO05D000383 1.1e-11 73.6 107 43.0
MELO3C017613.2 Cucumis melo HOM05D000300 ORTHO05D000383 1.5e-11 73.2 60 51.7
CsaV3_4G004520 Cucumis sativus L. HOM05D000300 ORTHO05D000383 1.5e-11 73.2 60 51.7
Hma1.2p1_0408F.1_g146590 Hydrangea macrophylla HOM05D000300 ORTHO05D000383 1.9e-11 72.8 69 50.7
Peaxi162Scf00691g00620 Petunia axillaris HOM05D000300 ORTHO05D000383 1.9e-11 72.8 53 60.4
Ciclev10011521m.g Citrus clementina HOM05D000300 ORTHO05D000383 2.5e-11 72.4 66 51.5
MD09G1284000 Malus domestica HOM05D000300 ORTHO05D000383 2.5e-11 72.4 53 56.6
Prupe.3G010700 Prunus persica HOM05D000300 ORTHO05D000383 3.3e-11 72.0 83 43.4
MSTRG.21695 Avicennia marina HOM05D000300 ORTHO05D000383 4.3e-11 71.6 60 56.7
Nn3g18645 Nelumbo nucifera HOM05D000300 ORTHO05D000383 4.3e-11 71.6 84 46.4
ClCG07G017320 Citrullus lanatus HOM05D000300 ORTHO05D000383 1.2e-10 70.1 60 50.0
Oeu014937.1 Olea europaea HOM05D000300 ORTHO05D000383 2.1e-10 69.3 107 39.3
Lj2A1207T65 Lonicera japonica HOM05D000300 ORTHO05D000383 2.8e-10 68.9 53 56.6
TAR362G0713 Trochodendron aralioides HOM05D000300 ORTHO05D000383 3.6e-10 68.6 84 39.3
Rhsim13G0004200 Rhododendron simsii HOM05D000300 ORTHO05D000383 4.7e-10 68.2 93 40.9
ECA247G1020 Erigeron canadensis HOM05D000300 ORTHO05D000383 8.1e-10 67.4 95 37.9
Gohir.A08G119700 Gossypium hirsutum HOM05D000300 ORTHO05D000383 8.1e-10 67.4 53 52.8
Gohir.D08G140600 Gossypium hirsutum HOM05D000300 ORTHO05D000383 8.1e-10 67.4 53 52.8
Gorai.004G144700 Gossypium raimondii HOM05D000300 ORTHO05D000383 8.1e-10 67.4 53 52.8
vmacro02395 Vaccinium macrocarpon HOM05D000300 ORTHO05D000383 8.1e-10 67.4 53 54.7
Dinv33128 Davidia involucrata HOM05D000300 ORTHO05D000383 1.1e-09 67.0 91 41.8
HanXRQChr10g0285081 Helianthus annuus HOM05D000300 ORTHO05D000383 1.8e-09 66.2 65 46.2
Lsat_1_v5_gn_9_4760 Lactuca sativa HOM05D000300 ORTHO05D000383 3.1e-09 65.5 95 40.0
TAR362G1228 Trochodendron aralioides HOM05D000300 ORTHO05D000383 3.1e-09 65.5 59 50.8
Glyma.10G011800 Glycine max HOM05D000300 ORTHO05D000383 4.0e-09 65.1 53 50.9
SGA_v2.0_scaffold334G49077 Striga asiatica HOM05D000300 ORTHO05D000383 4.0e-09 65.1 107 37.4
Cpa.g.sc18.64 Carica papaya HOM05D000300 ORTHO05D000383 5.2e-09 64.7 68 42.6
RcHm_v2.0_Chr3g0487401 Rosa chinensis HOM05D000300 ORTHO05D000383 5.2e-09 64.7 53 50.9
Lalb_Chr06g0166941 Lupinus albus HOM05D000300 ORTHO05D000383 6.8e-09 64.3 57 45.6
CANSAT25G2113 Cannabis sativa HOM05D000300 ORTHO05D000383 8.9e-09 63.9 68 47.1
Thecc.01G315200 Theobroma cacao HOM05D000300 ORTHO05D000383 8.9e-09 63.9 53 49.1
TWI75G0319 Tripterygium wilfordii HOM05D000300 ORTHO05D000383 8.9e-09 63.9 69 40.6
unitig_62.g23907 Utricularia gibba HOM05D004856 ORTHO05D005710 8.9e-09 63.9 99 39.4
CSS0000022 Camellia sinensis var. sinensis HOM05D000300 ORTHO05D000383 1.2e-08 63.5 57 49.1
Sed0011619 Sechium edule HOM05D000300 ORTHO05D000383 1.2e-08 63.5 60 45.0
unitig_0.g284 Utricularia gibba HOM05D000300 ORTHO05D000383 1.5e-08 63.2 84 40.5
GSVIVG01028139001 Vitis vinifera HOM05D000300 ORTHO05D000383 1.5e-08 63.2 105 38.1
Phvul.007G213200 Phaseolus vulgaris HOM05D000300 ORTHO05D000383 2.0e-08 62.8 53 45.3
A10p01140 Brassica napus HOM05D000300 ORTHO05D000383 2.6e-08 62.4 99 35.4
CiPaw.08G088500 Carya illinoinensis HOM05D000300 ORTHO05D000383 2.6e-08 62.4 53 47.2
THA.LOC104815919 Tarenaya hassleriana HOM05D000300 ORTHO05D000383 2.6e-08 62.4 53 50.9
VMungo0720G2413 Vigna mungo HOM05D000300 ORTHO05D000383 4.4e-08 61.6 53 45.3
arahy.Tifrunner.gnm1.ann1.FZ8JVT Arachis hypogaea HOM05D000300 ORTHO05D000383 5.8e-08 61.2 72 36.1
arahy.Tifrunner.gnm1.ann1.UGTA1Q Arachis hypogaea HOM05D000300 ORTHO05D000383 5.8e-08 61.2 72 36.1
MSTRG.18093 Avicennia marina HOM05D000300 ORTHO05D000383 5.8e-08 61.2 107 37.4
Duzib133G1019 Durio zibethinus HOM05D000300 ORTHO05D000383 7.5e-08 60.8 53 47.2
Lj5g0003548 Lotus japonicus HOM05D000300 ORTHO05D000383 7.5e-08 60.8 72 37.5
BcaC05g24618 Brassica carinata HOM05D000300 ORTHO05D000383 9.9e-08 60.5 99 35.4
C05p01170 Brassica napus HOM05D000300 ORTHO05D000383 9.9e-08 60.5 99 35.4
BolC5t28899H Brassica oleracea HOM05D000300 ORTHO05D000383 9.9e-08 60.5 99 35.4
CARHR001690 Cardamine hirsuta HOM05D000300 ORTHO05D000383 9.9e-08 60.5 101 34.7
Glyma.02G011200 Glycine max HOM05D000300 ORTHO05D000383 9.9e-08 60.5 53 47.2
QL12p019490 Quercus lobata HOM05D000300 ORTHO05D000383 9.9e-08 60.5 53 47.2
BcaB03g15787 Brassica carinata HOM05D000300 ORTHO05D000383 1.3e-07 60.1 79 36.7
Carub.0001s0142 Capsella rubella HOM05D000300 ORTHO05D000383 1.7e-07 59.7 53 45.3
Eucgr.H01002 Eucalyptus grandis HOM05D000300 ORTHO05D000383 1.7e-07 59.7 58 44.8
Medtr1g086820 Medicago truncatula HOM05D000300 ORTHO05D000383 1.7e-07 59.7 72 36.1
Psat6g162680 Pisum sativum HOM05D000300 ORTHO05D000383 2.2e-07 59.3 62 38.7
QL03p007878 Quercus lobata HOM05D003581 ORTHO05D023237 2.9e-07 58.9 53 47.2
TPR.G38599 Trifolium pratense HOM05D000300 ORTHO05D000383 2.9e-07 58.9 58 39.7
Ca_10274_v3 Cicer arietinum L. HOM05D000300 ORTHO05D000383 3.7e-07 58.5 63 38.1
FAN19G0957 Fragaria x ananassa HOM05D000300 ORTHO05D000383 3.7e-07 58.5 53 45.3
FAN23G2691 Fragaria x ananassa HOM05D000300 ORTHO05D000383 3.7e-07 58.5 53 45.3
FAN28G2865 Fragaria x ananassa HOM05D000300 ORTHO05D000383 3.7e-07 58.5 53 45.3
Sp1g01450 Schrenkiella parvula HOM05D000300 ORTHO05D000383 3.7e-07 58.5 105 32.4
AL1G11720 Arabidopsis lyrata HOM05D000300 ORTHO05D000383 6.4e-07 57.8 53 43.4
Actinidia17910 Actinidia chinensis HOM05D000300 ORTHO05D023237 8.3e-07 57.4 79 44.3
BraA10t42393Z Brassica rapa HOM05D000300 ORTHO05D000383 8.3e-07 57.4 99 33.3
VMungo0720G2006 Vigna mungo HOM05D000300 ORTHO05D000383 1.1e-06 57.0 51 43.1
Aqoxy4G02797 Aquilegia oxysepala HOM05D000300 ORTHO05D000383 1.4e-06 56.6 68 41.2
Aa31LG1G9990 Aethionema arabicum HOM05D000300 ORTHO05D000383 1.9e-06 56.2 106 32.1
Sabra02G0162200 Salix brachista HOM05D000300 ORTHO05D000383 1.9e-06 56.2 67 37.3
FAN26G0791 Fragaria x ananassa HOM05D000300 ORTHO05D000383 2.4e-06 55.8 53 43.4
PGR083G2456 Punica granatum HOM05D000300 ORTHO05D000383 2.4e-06 55.8 68 33.8
AT1G02370 Arabidopsis thaliana HOM05D000300 ORTHO05D000383 5.4e-06 54.7 53 41.5
MELO3C002597.2 Cucumis melo HOM05D000300 ORTHO05D000383 7.1e-06 54.3 56 41.1
Potri.002G194400 Populus trichocarpa HOM05D000300 ORTHO05D000383 7.1e-06 54.3 68 38.2
VMungo0720G2913 Vigna mungo HOM05D000300 ORTHO05D000383 7.1e-06 54.3 53 39.6
Haze_05065 Corylus avellana HOM05D000300 ORTHO05D000383 9.2e-06 53.9 53 43.4
HPP92_013519 Vanilla planifolia HOM05D000300 ORTHO05D000383 9.2e-06 53.9 64 39.1


User provided reference genes

Program Settings