Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow3G0415 Salvia bowleyana HOM05D004073 ORTHO05D004785 7.7e-200 700.3 354 100.0
MSTRG.20573 Avicennia marina HOM05D004073 ORTHO05D004785 1.6e-117 426.8 349 63.9
Migut.B01283 Erythranthe guttata HOM05D004073 ORTHO05D004785 7.9e-104 381.3 358 58.4
Dinv10322 Davidia involucrata HOM05D004073 ORTHO05D004785 2.4e-100 369.8 344 57.6
Manes.03G140000 Manihot esculenta HOM05D004073 ORTHO05D004785 5.0e-98 362.1 344 54.9
SGA_v2.0_scaffold119G32745 Striga asiatica HOM05D004073 ORTHO05D004785 6.5e-98 361.7 376 55.9
SalBow6G4871 Salvia bowleyana HOM05D004073 ORTHO05D004785 5.5e-97 358.6 347 56.2
Prupe.4G240000 Prunus persica HOM05D004073 ORTHO05D004785 7.2e-97 358.2 344 54.9
unitig_26.g10112 Utricularia gibba HOM05D004073 ORTHO05D004785 2.1e-96 356.7 353 53.8
Hma1.2p1_0036F.1_g022540 Hydrangea macrophylla HOM05D004073 ORTHO05D004785 5.1e-95 352.1 305 59.3
Peaxi162Scf00529g00814 Petunia axillaris HOM05D004073 ORTHO05D004785 1.9e-94 350.1 345 54.2
Cc02_g24500 Coffea canephora HOM05D004073 ORTHO05D004785 7.4e-94 348.2 344 55.2
GSVIVG01014646001 Vitis vinifera HOM05D004073 ORTHO05D004785 7.4e-94 348.2 345 55.9
Nitab4.5_0000276g0150 Nicotiana tabacum HOM05D004073 ORTHO05D004785 6.3e-93 345.1 346 56.1
Nitab4.5_0000083g0020 Nicotiana tabacum HOM05D004073 ORTHO05D004785 1.1e-92 344.4 346 55.5
Potri.001G366000 Populus trichocarpa HOM05D004073 ORTHO05D004785 1.8e-92 343.6 315 57.8
QL08p004797 Quercus lobata HOM05D004073 ORTHO05D004785 1.8e-92 343.6 345 55.7
Sabra16G0239500 Salix brachista HOM05D004073 ORTHO05D004785 1.2e-91 340.9 315 57.1
PGSC0003DMG400010530 Solanum tuberosum HOM05D004073 ORTHO05D004785 2.6e-91 339.7 346 54.3
MD11G1201600 Malus domestica HOM05D004073 ORTHO05D004785 4.5e-91 339.0 345 53.6
CiPaw.02G129700 Carya illinoinensis HOM05D004073 ORTHO05D004785 5.9e-91 338.6 345 53.6
CiPaw.01G209600 Carya illinoinensis HOM05D004073 ORTHO05D004785 7.7e-91 338.2 345 53.9
Sopen04g025530 Solanum pennellii HOM05D004073 ORTHO05D004785 1.0e-90 337.8 346 53.8
Solyc04g056610.3 Solanum lycopersicum HOM05D004073 ORTHO05D004785 1.3e-90 337.4 346 54.3
Lj8A177T32 Lonicera japonica HOM05D004073 ORTHO05D004785 1.7e-90 337.0 303 58.4
Cfa002798 Carpinus fangiana HOM05D004073 ORTHO05D004785 2.2e-90 336.7 345 54.2
HanXRQChr05g0159911 Helianthus annuus HOM05D004073 ORTHO05D004785 2.9e-90 336.3 351 53.8
MD00G1099100 Malus domestica HOM05D004073 ORTHO05D004785 2.9e-90 336.3 345 52.5
Manes.15G061500 Manihot esculenta HOM05D004073 ORTHO05D004785 2.9e-90 336.3 343 52.8
ClCG09G021180 Citrullus lanatus HOM05D004073 ORTHO05D004785 8.5e-90 334.7 349 53.9
RcHm_v2.0_Chr5g0053951 Rosa chinensis HOM05D004073 ORTHO05D004785 8.5e-90 334.7 343 50.7
CSS0000121 Camellia sinensis var. sinensis HOM05D004073 ORTHO05D004785 1.4e-89 334.0 345 53.3
Sed0026445 Sechium edule HOM05D004073 ORTHO05D004785 1.4e-89 334.0 349 55.9
CAN.G217.4 Capsicum annuum HOM05D004073 ORTHO05D004785 3.2e-89 332.8 345 54.8
Rhsim04G0013700 Rhododendron simsii HOM05D004073 ORTHO05D004785 3.2e-89 332.8 351 53.8
Sed0023598 Sechium edule HOM05D004073 ORTHO05D004785 3.2e-89 332.8 317 56.2
Duzib213G1048 Durio zibethinus HOM05D004073 ORTHO05D004785 4.2e-89 332.4 344 54.9
Ciclev10008892m.g Citrus clementina HOM05D004073 ORTHO05D004785 9.4e-89 331.3 344 53.8
MELO3C024919.2 Cucumis melo HOM05D004073 ORTHO05D004785 9.4e-89 331.3 349 53.6
Sc03g0011140 Simmondsia chinensis HOM05D004073 ORTHO05D004785 1.2e-88 330.9 345 52.2
TWI39G0963 Tripterygium wilfordii HOM05D004073 ORTHO05D004785 1.2e-88 330.9 344 54.4
Glyma.16G148100 Glycine max HOM05D004073 ORTHO05D004785 3.6e-88 329.3 296 60.1
Haze_25099 Corylus avellana HOM05D004073 ORTHO05D004785 4.7e-88 328.9 345 53.6
CSS0032183 Camellia sinensis var. sinensis HOM05D004073 ORTHO05D004785 6.1e-88 328.6 345 53.0
Phvul.004G069300 Phaseolus vulgaris HOM05D004073 ORTHO05D004785 6.1e-88 328.6 300 58.3
VMungo0464G1872 Vigna mungo HOM05D004073 ORTHO05D004785 1.8e-87 327.0 297 58.9
Thecc.07G016400 Theobroma cacao HOM05D004073 ORTHO05D004785 3.0e-87 326.2 345 53.3
Lj3g0026799 Lotus japonicus HOM05D004073 ORTHO05D004785 3.9e-87 325.9 350 53.7
Oeu005967.2 Olea europaea HOM05D004073 ORTHO05D004785 1.1e-86 324.3 404 45.8
Ca_04178_v3 Cicer arietinum L. HOM05D004073 ORTHO05D004785 7.4e-86 321.6 302 57.6
Duzib170G0711 Durio zibethinus HOM05D004073 ORTHO05D004785 1.3e-85 320.9 344 53.2
PGSC0003DMG400003290 Solanum tuberosum HOM05D004073 ORTHO05D004785 1.7e-85 320.5 345 52.5
Lalb_Chr01g0018421 Lupinus albus HOM05D004073 ORTHO05D004785 2.2e-85 320.1 296 58.4
RcHm_v2.0_Chr5g0077271 Rosa chinensis HOM05D004073 ORTHO05D004785 2.8e-85 319.7 343 49.9
TAR629G1249 Trochodendron aralioides HOM05D004073 ORTHO05D004785 2.8e-85 319.7 344 51.7
arahy.Tifrunner.gnm1.ann1.AHDC81 Arachis hypogaea HOM05D004073 ORTHO05D004785 3.7e-85 319.3 346 52.9
Lsat_1_v5_gn_5_1501 Lactuca sativa HOM05D004073 ORTHO05D004785 3.7e-85 319.3 343 53.4
PGR083G0661 Punica granatum HOM05D004073 ORTHO05D004785 3.7e-85 319.3 344 53.8
Gohir.A01G090300 Gossypium hirsutum HOM05D004073 ORTHO05D004785 4.8e-85 318.9 345 54.5
arahy.Tifrunner.gnm1.ann1.9SIV6F Arachis hypogaea HOM05D004073 ORTHO05D004785 6.3e-85 318.5 348 51.7
HanXRQChr07g0195741 Helianthus annuus HOM05D004073 ORTHO05D004785 6.3e-85 318.5 349 53.0
Lj1A888G37 Lonicera japonica HOM05D004073 ORTHO05D004785 6.3e-85 318.5 286 57.7
Gorai.002G098800 Gossypium raimondii HOM05D004073 ORTHO05D004785 8.2e-85 318.2 345 54.5
Glyma.02G067000 Glycine max HOM05D004073 ORTHO05D004785 1.4e-84 317.4 297 57.6
Hund01907 Selenicereus undatus HOM05D004073 ORTHO05D004785 4.1e-84 315.8 344 50.0
CSS0006286 Camellia sinensis var. sinensis HOM05D004073 ORTHO05D004785 9.1e-84 314.7 296 56.4
MBI16_g14388_MAGBIO Magnolia biondii HOM05D004073 ORTHO05D004785 1.2e-83 314.3 348 53.2
Gohir.D01G075600 Gossypium hirsutum HOM05D004073 ORTHO05D004785 1.5e-83 313.9 345 53.9
CANSAT01G2739 Cannabis sativa HOM05D004073 ORTHO05D004785 2.0e-83 313.5 343 51.3
Gohir.A13G133800 Gossypium hirsutum HOM05D004073 ORTHO05D004785 1.0e-82 311.2 350 52.6
Medtr4g086170 Medicago truncatula HOM05D004073 ORTHO05D004785 2.2e-82 310.1 311 54.7
Hund23121 Selenicereus undatus HOM05D004073 ORTHO05D004785 2.9e-82 309.7 344 51.5
vmacro09656 Vaccinium macrocarpon HOM05D004073 ORTHO05D004785 5.0e-82 308.9 369 49.6
Gorai.013G153800 Gossypium raimondii HOM05D004073 ORTHO05D004785 6.5e-82 308.5 343 51.3
TAR629G1509 Trochodendron aralioides HOM05D004073 ORTHO05D004785 8.5e-82 308.1 346 51.2
FAN21G2863 Fragaria x ananassa HOM05D004073 ORTHO05D004785 4.2e-81 305.8 340 48.5
Medtr6g005540 Medicago truncatula HOM05D004073 ORTHO05D004785 4.2e-81 305.8 308 54.2
Gohir.D13G137200 Gossypium hirsutum HOM05D004073 ORTHO05D004785 9.4e-81 304.7 239 64.0
FvH4_3g29460 Fragaria vesca HOM05D004073 ORTHO05D004785 1.2e-80 304.3 339 47.8
Eucgr.F02061 Eucalyptus grandis HOM05D004073 ORTHO05D004785 2.1e-80 303.5 344 52.3
AUR62017071 Chenopodium quinoa HOM05D004073 ORTHO05D004785 1.0e-79 301.2 349 48.4
TPR.G8724 Trifolium pratense HOM05D004073 ORTHO05D004785 1.8e-79 300.4 285 55.4
FAN11G2481 Fragaria x ananassa HOM05D004073 ORTHO05D004785 8.8e-79 298.1 339 47.5
Lalb_Chr15g0083341 Lupinus albus HOM05D004073 ORTHO05D004785 7.4e-78 295.0 345 49.9
FAN25G0469 Fragaria x ananassa HOM05D004073 ORTHO05D004785 9.7e-78 294.7 340 47.4
AUR62036423 Chenopodium quinoa HOM05D004073 ORTHO05D004785 3.7e-77 292.7 349 47.3
BcaC04g20215 Brassica carinata HOM05D004073 ORTHO05D004785 8.2e-77 291.6 352 50.6
C09p46590 Brassica napus HOM05D004073 ORTHO05D004785 8.2e-77 291.6 352 50.6
BolC9t57510H Brassica oleracea HOM05D004073 ORTHO05D004785 8.2e-77 291.6 352 50.6
AUR62036429 Chenopodium quinoa HOM05D004073 ORTHO05D004785 8.2e-77 291.6 349 47.0
Lj6g0025058 Lotus japonicus HOM05D004073 ORTHO05D004785 1.8e-76 290.4 327 49.8
CsaV3_7G018320 Cucumis sativus L. HOM05D004073 ORTHO05D004785 5.3e-76 288.9 213 67.6
DCAR_013227 Daucus carota HOM05D002706 ORTHO05D003253 5.3e-76 288.9 346 49.7
Lj2g0012663 Lotus japonicus HOM05D004073 ORTHO05D004785 1.6e-75 287.3 327 49.5
CARHR268920 Cardamine hirsuta HOM05D004073 ORTHO05D004785 7.7e-75 285.0 351 49.6
A10p12860 Brassica napus HOM05D004073 ORTHO05D004785 1.7e-74 283.9 352 49.1
BraA10t43379Z Brassica rapa HOM05D004073 ORTHO05D004785 1.7e-74 283.9 352 49.1
THA.LOC104817703 Tarenaya hassleriana HOM05D004073 ORTHO05D004785 2.2e-74 283.5 357 47.9
EL10Ac4g07603 Beta vulgaris HOM05D004073 ORTHO05D004785 1.5e-73 280.8 345 47.5
Medtr4g055190 Medicago truncatula HOM05D004073 ORTHO05D004785 1.5e-73 280.8 317 48.6
AT5G55610 Arabidopsis thaliana HOM05D004073 ORTHO05D004785 2.5e-73 280.0 350 47.7
COL.COLO4_09810 Corchorus olitorius HOM05D004073 ORTHO05D004785 3.2e-73 279.6 285 51.9
Phvul.006G074800 Phaseolus vulgaris HOM05D004073 ORTHO05D004785 1.2e-72 277.7 332 47.6
ATR1126G058 Amborella trichopoda HOM05D004073 ORTHO05D004785 1.6e-72 277.3 320 49.1
VMungo0540G1827 Vigna mungo HOM05D004073 ORTHO05D004785 2.3e-71 273.5 244 57.0
BcaB08g35921 Brassica carinata HOM05D004073 ORTHO05D004785 5.2e-71 272.3 351 48.4
CDE06G2507 Ceratophyllum demersum HOM05D004073 ORTHO05D004785 6.7e-71 271.9 349 48.1
Ah.06g181300 Amaranthus hybridus HOM05D004073 ORTHO05D004785 8.8e-71 271.6 343 45.2
Aqoxy5G03484 Aquilegia oxysepala HOM05D004073 ORTHO05D004785 1.5e-70 270.8 343 45.5
Psat7g190200 Pisum sativum HOM05D004073 ORTHO05D004785 7.5e-70 268.5 339 45.7
Ca_19377_v3 Cicer arietinum L. HOM05D004073 ORTHO05D004785 1.7e-69 267.3 332 46.1
Carub.0008s1598 Capsella rubella HOM05D004073 ORTHO05D004785 4.8e-69 265.8 344 45.6
Dinv40845 Davidia involucrata HOM05D004073 ORTHO05D004785 4.8e-69 265.8 262 56.5
arahy.Tifrunner.gnm1.ann1.F1PCFU Arachis hypogaea HOM05D004073 ORTHO05D004785 6.3e-69 265.4 339 46.9
PSO302G0019 Papaver somniferum HOM05D004073 ORTHO05D004785 6.3e-69 265.4 351 48.1
arahy.Tifrunner.gnm1.ann1.HAYR03 Arachis hypogaea HOM05D004073 ORTHO05D004785 2.4e-68 263.5 333 47.4
Sp6g17530 Schrenkiella parvula HOM05D004073 ORTHO05D004785 3.1e-68 263.1 301 49.2
Os12g0498800 Oryza sativa ssp. japonica HOM05D004073 ORTHO05D004785 4.1e-68 262.7 338 49.7
Thhalv10014039m.g Eutrema salsugineum HOM05D004073 ORTHO05D004785 2.0e-67 260.4 307 47.9
Psat1g055880 Pisum sativum HOM05D004073 ORTHO05D004785 5.9e-67 258.8 305 50.5
PSO210G1542 Papaver somniferum HOM05D004073 ORTHO05D004785 7.7e-67 258.5 348 46.6
Aa31LG3G11560 Aethionema arabicum HOM05D004073 ORTHO05D004785 1.7e-66 257.3 392 43.4
AL8G31180 Arabidopsis lyrata HOM05D004073 ORTHO05D004785 2.2e-66 256.9 301 46.8
ECA240G0169 Erigeron canadensis HOM05D004073 ORTHO05D004785 5.0e-66 255.8 343 45.8
A02p09590 Brassica napus HOM05D004073 ORTHO05D004785 1.1e-65 254.6 355 46.2
BraA02t06023Z Brassica rapa HOM05D004073 ORTHO05D004785 7.2e-65 251.9 355 45.9
HPP92_020483 Vanilla planifolia HOM05D004073 ORTHO05D004785 7.2e-65 251.9 283 49.8
C02p15980 Brassica napus HOM05D004073 ORTHO05D004785 6.1e-64 248.8 355 45.6
CDE04G2763 Ceratophyllum demersum HOM05D004073 ORTHO05D004785 4.0e-63 246.1 331 48.3
Cpa.g.sc12.171 Carica papaya HOM05D004073 ORTHO05D004785 6.3e-61 238.8 303 43.9
Nn1g07482 Nelumbo nucifera HOM05D004073 ORTHO05D004785 1.8e-60 237.3 266 50.8
BolC2t07705H Brassica oleracea HOM05D004073 ORTHO05D004785 1.6e-59 234.2 384 42.2
Actinidia35391 Actinidia chinensis HOM05D004073 ORTHO05D004785 1.3e-58 231.1 173 65.9
BcaB05g22217 Brassica carinata HOM05D004073 ORTHO05D004785 9.5e-57 224.9 310 44.8
ECA246G0082 Erigeron canadensis HOM05D004073 ORTHO05D004785 8.0e-56 221.9 339 43.7
MD00G1008300 Malus domestica HOM05D004073 ORTHO05D004785 6.8e-55 218.8 239 50.2
Pp3c17_1290 Physcomitrium patens HOM05D004073 ORTHO05D004785 2.0e-54 217.2 238 49.6
CANSAT01G1348 Cannabis sativa HOM05D004073 ORTHO05D004785 2.6e-54 216.9 325 44.6
arahy.Tifrunner.gnm1.ann1.0WG7ZM Arachis hypogaea HOM05D004073 ORTHO05D004785 4.9e-53 212.6 160 63.1
Haze_03265 Corylus avellana HOM05D004073 ORTHO05D004785 6.3e-53 212.2 252 49.2
Mapoly0030s0146 Marchantia polymorpha HOM05D004073 ORTHO05D004785 5.4e-52 209.1 229 48.9
Pp3c12_2880 Physcomitrium patens HOM05D004073 ORTHO05D004785 1.6e-51 207.6 238 48.3
Atru.chr2.3668 Acer truncatum HOM05D004073 ORTHO05D004785 2.9e-50 203.4 158 65.8
arahy.Tifrunner.gnm1.ann1.W5ZFFA Arachis hypogaea HOM05D004073 ORTHO05D004785 5.0e-50 202.6 160 59.4
AagrBONN_evm.TU.Sc2ySwM_117.3546 Anthoceros agrestis HOM05D004073 ORTHO05D004785 8.9e-47 191.8 239 45.2
SMO172G0209 Selaginella moellendorffii HOM05D004073 ORTHO05D004785 2.7e-43 180.3 326 38.0
Nn1g03214 Nelumbo nucifera HOM05D004073 ORTHO05D004785 3.6e-40 169.9 186 51.1
Gorai.010G179600 Gossypium raimondii HOM05D004073 ORTHO05D004785 1.7e-37 161.0 186 51.6
Gorai.002G215300 Gossypium raimondii HOM05D004073 ORTHO05D004785 7.0e-36 155.6 220 48.2
Gorai.013G151000 Gossypium raimondii HOM05D004073 ORTHO05D004785 9.2e-36 155.2 215 46.0
Gohir.D06G153600 Gossypium hirsutum HOM05D004073 ORTHO05D004785 2.1e-35 154.1 215 46.5
MBI16_g14390_MAGBIO Magnolia biondii HOM05D004073 ORTHO05D004785 2.7e-35 153.7 134 56.0
TPR.G15593 Trifolium pratense HOM05D004073 ORTHO05D004785 4.3e-33 146.4 129 54.3
MBI16_g43434_MAGBIO Magnolia biondii HOM05D004073 ORTHO05D004785 8.1e-32 142.1 117 59.0
SEGI_11688 Sequoiadendron giganteum HOM05D004073 ORTHO05D004785 2.6e-30 137.1 130 53.1
Zm00001eb409570 Zea mays HOM05D004073 ORTHO05D004785 2.6e-30 137.1 218 41.7
Actinidia37162 Actinidia chinensis HOM05D004073 ORTHO05D004785 1.2e-27 128.3 189 45.0
SEGI_22606 Sequoiadendron giganteum HOM05D004073 ORTHO05D004785 3.5e-27 126.7 145 51.7
TPR.G31066 Trifolium pratense HOM05D004073 ORTHO05D004785 1.2e-24 118.2 157 43.3
Thecc.07G016200 Theobroma cacao HOM05D004073 ORTHO05D004785 1.7e-21 107.8 98 56.1
Medtr4g055205 Medicago truncatula HOM05D004073 ORTHO05D004785 3.8e-21 106.7 102 51.0
Gohir.A04G002800 Gossypium hirsutum HOM05D004073 ORTHO05D004785 8.4e-21 105.5 144 44.4
TAR626G1493 Trochodendron aralioides HOM05D004073 ORTHO05D004785 2.7e-19 100.5 165 41.2
CBR_g33924 Chara braunii HOM05D004073 ORTHO05D004785 3.0e-18 97.1 221 32.1
HPP92_020450 Vanilla planifolia HOM05D004073 ORTHO05D004785 6.9e-15 85.9 90 48.9
MBI19_g20151_MAGBIO Magnolia biondii HOM05D004073 ORTHO05D004785 2.7e-11 73.9 139 36.7
Lsat_1_v5_gn_1_76240 Lactuca sativa HOM05D004073 ORTHO05D004785 3.9e-10 70.1 60 61.7
GSVIVG01014652001 Vitis vinifera HOM05D004073 ORTHO05D004785 3.9e-10 70.1 54 61.1
PGSC0003DMG401021129 Solanum tuberosum HOM05D004073 ORTHO05D004785 5.1e-10 69.7 52 61.5
PRCOL_00005800 Prasinoderma coloniale HOM05D004073 ORTHO05D004785 9.6e-09 65.5 232 27.2
VMungo1127G1263 Vigna mungo HOM05D004073 ORTHO05D004785 9.9e-06 55.5 38 63.2


User provided reference genes

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