Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow3G0248 Salvia bowleyana HOM05D004070 ORTHO05D004904 0.0e+00 1453.0 712 100.0
SalBow3G2100 Salvia bowleyana HOM05D004070 ORTHO05D004904 0.0e+00 1435.6 712 98.6
MSTRG.8925 Avicennia marina HOM05D004070 ORTHO05D004904 1.1e-309 1066.2 722 72.0
Migut.F00635 Erythranthe guttata HOM05D004070 ORTHO05D004904 7.4e-303 1043.5 716 70.3
SGA_v2.0_scaffold60G20962 Striga asiatica HOM05D004070 ORTHO05D004904 3.2e-290 1001.5 716 69.1
Oeu043174.1 Olea europaea HOM05D004070 ORTHO05D004904 3.2e-282 974.9 718 66.9
Peaxi162Scf00284g00526 Petunia axillaris HOM05D004070 ORTHO05D004904 4.0e-272 941.4 711 63.4
Dinv10587 Davidia involucrata HOM05D004070 ORTHO05D004904 6.8e-272 940.6 706 64.4
Sopen06g016660 Solanum pennellii HOM05D004070 ORTHO05D004904 2.7e-268 928.7 720 63.2
Solyc06g050930.3 Solanum lycopersicum HOM05D004070 ORTHO05D004904 7.8e-268 927.2 720 62.9
Nitab4.5_0003710g0040 Nicotiana tabacum HOM05D004070 ORTHO05D004904 6.6e-267 924.1 718 62.1
Rhsim03G0147100 Rhododendron simsii HOM05D004070 ORTHO05D004904 1.4e-264 916.4 687 65.1
TAR623G0471 Trochodendron aralioides HOM05D004070 ORTHO05D004904 2.0e-263 912.5 696 65.1
Nitab4.5_0000058g0090 Nicotiana tabacum HOM05D004070 ORTHO05D004904 1.3e-262 909.8 724 61.2
CAN.G19.7 Capsicum annuum HOM05D004070 ORTHO05D004904 4.1e-261 904.8 718 62.4
Duzib128G0764 Durio zibethinus HOM05D004070 ORTHO05D004904 5.0e-259 897.9 679 63.8
vmacro06948 Vaccinium macrocarpon HOM05D004070 ORTHO05D004904 4.3e-258 894.8 755 60.4
Lj1A961T78 Lonicera japonica HOM05D004070 ORTHO05D004904 7.3e-258 894.0 724 59.9
Migut.F01473 Erythranthe guttata HOM05D004070 ORTHO05D004904 2.1e-257 892.5 685 64.5
Gorai.012G079500 Gossypium raimondii HOM05D004070 ORTHO05D004904 2.3e-256 889.0 716 60.2
Thecc.10G010900 Theobroma cacao HOM05D004070 ORTHO05D004904 6.8e-256 887.5 701 61.9
Potri.010G184200 Populus trichocarpa HOM05D004070 ORTHO05D004904 3.4e-255 885.2 689 61.7
Sabra10G0141400 Salix brachista HOM05D004070 ORTHO05D004904 4.4e-255 884.8 715 60.4
Rhsim03G0146900 Rhododendron simsii HOM05D004070 ORTHO05D004904 9.9e-255 883.6 695 62.7
Prupe.2G256300 Prunus persica HOM05D004070 ORTHO05D004904 1.4e-253 879.8 685 62.0
MD07G1226700 Malus domestica HOM05D004070 ORTHO05D004904 4.1e-253 878.2 723 59.1
MD01G1158000 Malus domestica HOM05D004070 ORTHO05D004904 4.6e-252 874.8 689 60.5
Ciclev10030777m.g Citrus clementina HOM05D004070 ORTHO05D004904 5.1e-251 871.3 703 60.9
RcHm_v2.0_Chr1g0370971 Rosa chinensis HOM05D004070 ORTHO05D004904 5.1e-251 871.3 699 60.1
Gorai.011G290600 Gossypium raimondii HOM05D004070 ORTHO05D004904 6.6e-251 870.9 683 62.7
Gohir.A10G238300 Gossypium hirsutum HOM05D004070 ORTHO05D004904 3.3e-250 868.6 688 61.9
Gohir.D10G250200 Gossypium hirsutum HOM05D004070 ORTHO05D004904 7.3e-250 867.5 683 62.4
DCAR_011846 Daucus carota HOM05D004070 ORTHO05D004904 1.8e-248 862.8 696 60.6
Eucgr.J00174 Eucalyptus grandis HOM05D004070 ORTHO05D004904 1.5e-247 859.8 739 57.6
EL10Ac2g04896 Beta vulgaris HOM05D004070 ORTHO05D004904 2.0e-247 859.4 689 60.2
TWI73G0078 Tripterygium wilfordii HOM05D004070 ORTHO05D004904 7.6e-247 857.4 696 59.5
Lj8A62T48 Lonicera japonica HOM05D004070 ORTHO05D004904 1.4e-245 853.2 610 66.4
Lsat_1_v5_gn_2_125521 Lactuca sativa HOM05D004070 ORTHO05D004904 2.4e-245 852.4 674 61.4
Manes.10G008700 Manihot esculenta HOM05D004070 ORTHO05D004904 2.4e-245 852.4 678 60.5
FvH4_7g25120 Fragaria vesca HOM05D004070 ORTHO05D004904 3.2e-245 852.0 706 59.2
QL08p063798 Quercus lobata HOM05D004070 ORTHO05D004904 1.2e-244 850.1 702 59.5
Aqoxy1G01303 Aquilegia oxysepala HOM05D004070 ORTHO05D004904 3.0e-243 845.5 731 57.9
ECA238G2061 Erigeron canadensis HOM05D004070 ORTHO05D004904 8.7e-243 844.0 679 59.6
Atru.chr12.102 Acer truncatum HOM05D004070 ORTHO05D004904 2.5e-242 842.4 663 61.4
FAN03G3092 Fragaria x ananassa HOM05D004070 ORTHO05D004904 1.2e-241 840.1 720 57.8
TPR.G27736 Trifolium pratense HOM05D004070 ORTHO05D004904 2.1e-241 839.3 683 60.2
HanXRQChr17g0536301 Helianthus annuus HOM05D004070 ORTHO05D004904 8.1e-241 837.4 699 57.1
Psat5g130680 Pisum sativum HOM05D004070 ORTHO05D004904 1.1e-240 837.0 689 60.4
FAN01G1500 Fragaria x ananassa HOM05D004070 ORTHO05D004904 9.0e-240 833.9 722 56.8
CANSAT56G1738 Cannabis sativa HOM05D004070 ORTHO05D004904 1.5e-239 833.2 675 60.1
PSO765G0033 Papaver somniferum HOM05D004070 ORTHO05D004904 3.4e-239 832.0 713 55.8
Lj6g0014816 Lotus japonicus HOM05D004070 ORTHO05D004904 2.9e-238 828.9 687 59.5
PSO349G0044 Papaver somniferum HOM05D004070 ORTHO05D004904 3.8e-238 828.6 707 56.3
Medtr3g071610 Medicago truncatula HOM05D004070 ORTHO05D004904 8.4e-238 827.4 671 59.5
Glyma.11G232700 Glycine max HOM05D004070 ORTHO05D004904 2.4e-237 825.9 687 59.5
Haze_17281 Corylus avellana HOM05D004070 ORTHO05D004904 5.4e-237 824.7 684 59.4
FAN06G4674 Fragaria x ananassa HOM05D004070 ORTHO05D004904 5.4e-237 824.7 746 56.0
AUR62022946 Chenopodium quinoa HOM05D004070 ORTHO05D004904 2.1e-236 822.8 673 58.2
CiPaw.02G195800 Carya illinoinensis HOM05D004070 ORTHO05D004904 1.7e-235 819.7 691 58.0
CiPaw.12G018900 Carya illinoinensis HOM05D004070 ORTHO05D004904 1.1e-234 817.0 677 58.9
AUR62012305 Chenopodium quinoa HOM05D004070 ORTHO05D004904 1.5e-234 816.6 688 56.8
Duzib106G0498 Durio zibethinus HOM05D004070 ORTHO05D004904 5.6e-234 814.7 717 56.9
Phvul.001G245900 Phaseolus vulgaris HOM05D004070 ORTHO05D004904 9.6e-234 813.9 710 57.5
Ca_15154_v3 Cicer arietinum L. HOM05D004070 ORTHO05D004904 4.8e-233 811.6 691 58.0
PGR044G0681 Punica granatum HOM05D004070 ORTHO05D004904 5.3e-232 808.1 678 57.5
Glyma.18G024300 Glycine max HOM05D004070 ORTHO05D004904 1.5e-231 806.6 687 58.5
Lalb_Chr08g0231511 Lupinus albus HOM05D004070 ORTHO05D004904 1.5e-231 806.6 700 56.3
Potri.010G184300 Populus trichocarpa HOM05D004070 ORTHO05D004904 4.5e-231 805.1 713 57.2
Glyma.14G056600 Glycine max HOM05D004070 ORTHO05D004904 3.8e-230 802.0 675 59.0
Haze_17272 Corylus avellana HOM05D004070 ORTHO05D004904 6.4e-230 801.2 684 57.9
Cc02_g06030 Coffea canephora HOM05D004070 ORTHO05D004904 3.2e-229 798.9 591 66.5
Gohir.A05G332000 Gossypium hirsutum HOM05D004070 ORTHO05D004904 6.0e-228 794.7 631 61.6
VMungo0647G1128 Vigna mungo HOM05D004070 ORTHO05D004904 1.3e-227 793.5 677 58.6
VMungo1383G0354 Vigna mungo HOM05D004070 ORTHO05D004904 1.8e-227 793.1 691 56.6
Glyma.02G262300 Glycine max HOM05D004070 ORTHO05D004904 2.3e-227 792.7 687 57.5
Glyma.14G056500 Glycine max HOM05D004070 ORTHO05D004904 6.7e-227 791.2 674 58.3
ATR0174G011 Amborella trichopoda HOM05D004070 ORTHO05D004904 3.1e-224 782.3 742 53.9
GSVIVG01032751001 Vitis vinifera HOM05D004070 ORTHO05D004904 2.0e-223 779.6 591 63.3
Nn2g10988 Nelumbo nucifera HOM05D004070 ORTHO05D004904 5.5e-221 771.5 680 56.5
Sed0002479 Sechium edule HOM05D004070 ORTHO05D004904 1.0e-219 767.3 691 55.9
CsaV3_5G010510 Cucumis sativus L. HOM05D004070 ORTHO05D004904 3.0e-219 765.8 691 55.4
Gohir.D04G070700 Gossypium hirsutum HOM05D004070 ORTHO05D004904 3.0e-219 765.8 716 54.2
Ciclev10031026m.g Citrus clementina HOM05D004070 ORTHO05D004904 2.8e-217 759.2 618 60.0
ClCG07G004560 Citrullus lanatus HOM05D004070 ORTHO05D004904 2.0e-215 753.1 684 55.8
CARHR207790 Cardamine hirsuta HOM05D004070 ORTHO05D004904 6.5e-214 748.0 687 53.3
AT5G05460 Arabidopsis thaliana HOM05D004070 ORTHO05D004904 1.1e-213 747.3 680 53.1
Carub.0006s0436 Capsella rubella HOM05D004070 ORTHO05D004904 1.6e-212 743.4 678 53.5
AL6G15350 Arabidopsis lyrata HOM05D004070 ORTHO05D004904 2.7e-212 742.7 677 53.0
Sabra10G0141500 Salix brachista HOM05D004070 ORTHO05D004904 6.0e-212 741.5 890 47.2
Sp6g37380 Schrenkiella parvula HOM05D004070 ORTHO05D004904 1.3e-211 740.3 676 52.5
Thhalv10012879m.g Eutrema salsugineum HOM05D004070 ORTHO05D004904 2.3e-211 739.6 677 51.8
A03p02310 Brassica napus HOM05D004070 ORTHO05D004904 1.9e-210 736.5 679 52.7
BcaB01g05761 Brassica carinata HOM05D004070 ORTHO05D004904 2.5e-210 736.1 680 52.8
BraA03t09594Z Brassica rapa HOM05D004070 ORTHO05D004904 4.3e-210 735.3 678 53.2
BcaB01g05950 Brassica carinata HOM05D004070 ORTHO05D004904 5.7e-210 734.9 680 52.6
BolC3t12817H Brassica oleracea HOM05D004070 ORTHO05D004904 5.7e-210 734.9 680 52.6
C03p02630 Brassica napus HOM05D004070 ORTHO05D004904 1.3e-209 733.8 680 52.5
ClCG07G004550 Citrullus lanatus HOM05D004070 ORTHO05D004904 3.7e-209 732.3 680 55.9
CsaV3_5G010500 Cucumis sativus L. HOM05D004070 ORTHO05D004904 6.3e-209 731.5 710 52.7
PGR142G0892 Punica granatum HOM05D004070 ORTHO05D004904 7.6e-207 724.5 682 56.0
Sp3g09370 Schrenkiella parvula HOM05D004070 ORTHO05D004904 1.1e-205 720.7 688 51.6
CSS0045603 Camellia sinensis var. sinensis HOM05D004070 ORTHO05D004904 1.9e-205 719.9 530 66.2
unitig_32.g11775 Utricularia gibba HOM05D004070 ORTHO05D004904 7.9e-204 714.5 713 53.6
Thhalv10020200m.g Eutrema salsugineum HOM05D004070 ORTHO05D004904 5.1e-203 711.8 689 51.5
Aa31LG11G6530 Aethionema arabicum HOM05D004070 ORTHO05D004904 1.9e-202 709.9 676 50.9
CARHR085620 Cardamine hirsuta HOM05D004070 ORTHO05D004904 2.5e-202 709.5 688 50.9
Ah.16g103890 Amaranthus hybridus HOM05D004070 ORTHO05D004904 5.7e-202 708.4 677 53.8
Carub.0003s1033 Capsella rubella HOM05D004070 ORTHO05D004904 5.7e-202 708.4 703 50.5
arahy.Tifrunner.gnm1.ann1.PDR9Z8 Arachis hypogaea HOM05D004070 ORTHO05D004904 1.7e-201 706.8 739 50.9
AT3G11040 Arabidopsis thaliana HOM05D004070 ORTHO05D004904 4.8e-201 705.3 704 50.0
Aa31LG3G4060 Aethionema arabicum HOM05D004070 ORTHO05D004904 8.2e-201 704.5 683 50.7
THA.LOC104816686 Tarenaya hassleriana HOM05D004070 ORTHO05D004904 1.4e-200 703.7 712 50.8
arahy.Tifrunner.gnm1.ann1.DADU25 Arachis hypogaea HOM05D004070 ORTHO05D004904 5.9e-199 698.4 756 48.9
FAN10G1680 Fragaria x ananassa HOM05D004070 ORTHO05D004904 2.9e-198 696.0 660 54.4
BcaB04g21158 Brassica carinata HOM05D004070 ORTHO05D004904 4.2e-197 692.2 706 50.8
AL3G22590 Arabidopsis lyrata HOM05D004070 ORTHO05D004904 5.5e-197 691.8 688 49.6
CANSAT56G2024 Cannabis sativa HOM05D004070 ORTHO05D004904 7.9e-196 688.0 681 53.3
SEGI_36115 Sequoiadendron giganteum HOM05D004070 ORTHO05D004904 8.8e-195 684.5 754 47.7
arahy.Tifrunner.gnm1.ann1.T4ULTV Arachis hypogaea HOM05D004070 ORTHO05D004904 1.1e-194 684.1 669 54.7
BolC1t05338H Brassica oleracea HOM05D004070 ORTHO05D004904 1.1e-192 677.6 720 48.8
Os05g0346500 Oryza sativa ssp. japonica HOM05D004070 ORTHO05D004904 1.2e-191 674.1 676 50.4
arahy.Tifrunner.gnm1.ann1.L3EDXB Arachis hypogaea HOM05D004070 ORTHO05D004904 5.5e-189 665.2 669 53.5
MELO3C018386.2 Cucumis melo HOM05D004070 ORTHO05D004904 1.2e-188 664.1 695 50.8
CDE06G0669 Ceratophyllum demersum HOM05D004070 ORTHO05D004904 1.0e-187 661.0 639 52.1
MELO3C018385.2 Cucumis melo HOM05D004070 ORTHO05D004904 9.1e-184 647.9 698 49.1
BcaC09g48150 Brassica carinata HOM05D004070 ORTHO05D004904 1.9e-181 640.2 590 55.1
COL.COLO4_25787 Corchorus olitorius HOM05D004070 ORTHO05D004904 1.1e-173 614.4 727 47.7
Sc11g0005320 Simmondsia chinensis HOM05D004070 ORTHO05D004904 8.8e-171 604.7 531 56.5
Manes.10G008500 Manihot esculenta HOM05D004070 ORTHO05D004904 2.6e-170 603.2 563 54.4
AL467U10010 Arabidopsis lyrata HOM05D004070 ORTHO05D004904 4.4e-170 602.4 688 45.5
HPP92_006774 Vanilla planifolia HOM05D004070 ORTHO05D004904 7.0e-168 595.1 678 47.1
Zm00001eb347620 Zea mays HOM05D004070 ORTHO05D004904 1.4e-139 501.1 541 47.7
SGA_v2.0_scaffold395G50725 Striga asiatica HOM05D004070 ORTHO05D004904 9.5e-133 478.4 395 59.7
BcaC09g48154 Brassica carinata HOM05D004070 ORTHO05D004904 1.2e-127 461.5 332 63.6
SMO351G0021 Selaginella moellendorffii HOM05D004070 ORTHO05D004904 2.1e-127 460.7 426 51.2
Cpa.g.sc19.130 Carica papaya HOM05D004070 ORTHO05D004904 3.5e-119 433.3 389 54.5
PSO478G2175 Papaver somniferum HOM05D004070 ORTHO05D004904 1.1e-115 421.8 298 63.8
Dinv21779 Davidia involucrata HOM05D004070 ORTHO05D004904 2.2e-105 387.5 231 77.5
CBR_g6382 Chara braunii HOM05D004070 ORTHO05D004904 2.1e-100 370.9 405 45.7
BraA01t04204Z Brassica rapa HOM05D004070 ORTHO05D004904 1.4e-91 341.7 456 42.1
Pp3c4_19160 Physcomitrium patens HOM05D004070 ORTHO05D004904 2.4e-91 340.9 562 35.4
Glyma.02G262251 Glycine max HOM05D004070 ORTHO05D004904 5.9e-90 336.3 406 46.1
AagrBONN_evm.TU.Sc2ySwM_362.570 Anthoceros agrestis HOM05D004070 ORTHO05D004904 3.2e-88 330.5 545 35.6
Cre13.g582250 Chlamydomonas reinhardtii HOM05D004070 ORTHO05D004904 1.3e-84 318.5 311 48.6
PGSC0003DMG400023947 Solanum tuberosum HOM05D004070 ORTHO05D004904 3.7e-84 317.0 322 50.3
Mapoly0073s0082 Marchantia polymorpha HOM05D004070 ORTHO05D004904 3.9e-78 297.0 571 33.3
Glyma.02G262200 Glycine max HOM05D004070 ORTHO05D004904 2.9e-57 227.6 181 60.8
SGA_v2.0_scaffold395G50724 Striga asiatica HOM05D004070 ORTHO05D004904 2.1e-55 221.5 137 73.0
BraA01t04205Z Brassica rapa HOM05D004070 ORTHO05D004904 9.8e-53 212.6 184 56.5
SGA_v2.0_scaffold395G50723 Striga asiatica HOM05D004070 ORTHO05D004904 9.1e-51 206.1 120 76.7
Potri.008G073001 Populus trichocarpa HOM05D004070 ORTHO05D004904 1.6e-47 195.3 211 48.3
BcaB07g33013 Brassica carinata HOM05D004070 ORTHO05D004904 2.8e-47 194.5 229 44.5
Cpa.g.sc19.132 Carica papaya HOM05D004070 ORTHO05D004904 8.0e-47 193.0 250 43.2
MELO3C034437.2 Cucumis melo HOM05D004070 ORTHO05D004904 1.1e-43 182.6 129 63.6
Sopen01g021300 Solanum pennellii HOM05D004070 ORTHO05D004904 1.8e-43 181.8 212 45.8
Atru.chr12.101 Acer truncatum HOM05D004070 ORTHO05D004904 6.6e-41 173.3 177 49.2
AT3G61010 Arabidopsis thaliana HOM05D004070 ORTHO05D004904 2.6e-37 161.4 388 32.0
BcaB04g21152 Brassica carinata HOM05D004070 ORTHO05D004904 1.9e-32 145.2 99 65.7
BcaB04g21155 Brassica carinata HOM05D004070 ORTHO05D004904 1.9e-32 145.2 99 65.7
BcaB04g21156 Brassica carinata HOM05D004070 ORTHO05D004904 1.9e-32 145.2 99 65.7
arahy.Tifrunner.gnm1.ann1.0XTL3F Arachis hypogaea HOM05D004070 ORTHO05D004904 1.2e-26 125.9 163 40.5
Dinv21778 Davidia involucrata HOM05D004070 ORTHO05D004904 3.3e-24 117.9 275 32.7
BraA01t04203Z Brassica rapa HOM05D000053 ORTHO05D000035 3.4e-21 107.8 245 32.7
BolC1t05337H Brassica oleracea HOM05D000053 ORTHO05D000035 9.2e-19 99.8 248 30.6
BcaB03g16457 Brassica carinata HOM05D004070 ORTHO05D032257 3.0e-17 94.7 59 69.5
Sabra08G0054200 Salix brachista HOM05D004070 ORTHO05D004904 2.5e-16 91.7 203 34.0
arahy.Tifrunner.gnm1.ann1.N2R911 Arachis hypogaea HOM05D004070 ORTHO05D004904 2.1e-15 88.6 72 58.3
arahy.Tifrunner.gnm1.ann1.JYP4ZT Arachis hypogaea HOM05D004070 ORTHO05D004904 3.1e-14 84.7 145 36.6
CsaV3_5G010480 Cucumis sativus L. HOM05D004070 ORTHO05D004904 4.4e-13 80.9 205 29.8
BcaB07g33265 Brassica carinata HOM05D004070 ORTHO05D032257 3.8e-12 77.8 48 66.7
BcaB07g33267 Brassica carinata HOM05D004070 ORTHO05D032257 3.8e-12 77.8 48 66.7
Potri.008G072901 Populus trichocarpa HOM05D004070 ORTHO05D004904 1.1e-11 76.3 118 34.7
BcaC06g31359 Brassica carinata HOM05D004070 ORTHO05D000295 1.1e-08 66.2 46 60.9


User provided reference genes

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