Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow3G0195 Salvia bowleyana HOM05D006888 ORTHO05D008371 5.8e-133 478.8 418 100.0
SGA_v2.0_scaffold5G02782 Striga asiatica HOM05D006888 ORTHO05D008371 2.4e-62 244.2 208 58.2
Migut.K00794 Erythranthe guttata HOM05D006888 ORTHO05D008371 9.7e-56 222.2 209 57.9
Oeu064824.1 Olea europaea HOM05D006888 ORTHO05D008371 5.3e-54 216.5 230 51.3
PGSC0003DMG400002802 Solanum tuberosum HOM05D006888 ORTHO05D008371 2.0e-45 188.0 215 46.5
Solyc01g100450.1 Solanum lycopersicum HOM05D006888 ORTHO05D008371 3.5e-45 187.2 215 46.5
Sopen01g043970 Solanum pennellii HOM05D006888 ORTHO05D008371 2.9e-44 184.1 215 45.6
CAN.G1715.1 Capsicum annuum HOM05D006888 ORTHO05D008371 3.8e-44 183.7 304 58.2
Nitab4.5_0000368g0090 Nicotiana tabacum HOM05D006888 ORTHO05D008371 2.7e-42 177.6 192 46.9
GSVIVG01031237001 Vitis vinifera HOM05D006888 ORTHO05D008371 1.0e-41 175.6 186 48.9
ClCG02G014950 Citrullus lanatus HOM05D006888 ORTHO05D008371 1.5e-40 171.8 194 49.0
CsaV3_2G007050 Cucumis sativus L. HOM05D006888 ORTHO05D008371 1.5e-40 171.8 195 49.2
MELO3C004188.2 Cucumis melo HOM05D006888 ORTHO05D008371 1.7e-39 168.3 194 49.0
CSS0014440 Camellia sinensis var. sinensis HOM05D006888 ORTHO05D008371 2.4e-38 164.5 187 47.1
Hma1.2p1_0472F.1_g160001 Hydrangea macrophylla HOM05D006888 ORTHO05D008371 7.0e-38 162.9 185 45.9
CSS0050387 Camellia sinensis var. sinensis HOM05D006888 ORTHO05D008371 3.5e-37 160.6 186 46.2
Duzib177G0618 Durio zibethinus HOM05D006888 ORTHO05D008371 3.5e-37 160.6 177 44.6
Peaxi162Scf00673g00033 Petunia axillaris HOM05D006888 ORTHO05D008371 1.9e-35 154.8 176 44.3
FvH4_1g12100 Fragaria vesca HOM05D006888 ORTHO05D008371 7.3e-35 152.9 186 45.2
FAN19G1999 Fragaria x ananassa HOM05D006888 ORTHO05D008371 1.2e-34 152.1 186 45.2
Phvul.002G058500 Phaseolus vulgaris HOM05D006888 ORTHO05D008371 1.6e-34 151.8 207 39.6
Prupe.7G165800 Prunus persica HOM05D006888 ORTHO05D008371 1.6e-34 151.8 188 45.2
RcHm_v2.0_Chr2g0099761 Rosa chinensis HOM05D006888 ORTHO05D008371 1.6e-34 151.8 186 44.1
Cfa006701 Carpinus fangiana HOM05D006888 ORTHO05D008371 6.1e-34 149.8 186 42.5
Haze_04061 Corylus avellana HOM05D004265 ORTHO05D005175 8.0e-34 149.4 186 42.5
Lsat_1_v5_gn_7_74401 Lactuca sativa HOM05D006888 ORTHO05D008371 8.0e-34 149.4 187 43.3
Gohir.A11G273300 Gossypium hirsutum HOM05D006888 ORTHO05D008371 1.4e-33 148.7 177 43.5
Gohir.D11G283400 Gossypium hirsutum HOM05D006888 ORTHO05D008371 1.4e-33 148.7 177 42.9
Gorai.007G306300 Gossypium raimondii HOM05D006888 ORTHO05D008371 1.4e-33 148.7 177 42.9
VMungo1215G1495 Vigna mungo HOM05D006888 ORTHO05D008371 3.0e-33 147.5 186 43.5
Glyma.11G103200 Glycine max HOM05D006888 ORTHO05D008371 4.0e-33 147.1 185 44.3
Medtr4g108060 Medicago truncatula HOM05D006888 ORTHO05D008371 4.0e-33 147.1 186 43.5
Psat5g196040 Pisum sativum HOM05D006888 ORTHO05D008371 4.0e-33 147.1 186 44.1
HanXRQChr02g0059161 Helianthus annuus HOM05D006888 ORTHO05D008371 6.8e-33 146.4 176 44.9
Medtr4g074390 Medicago truncatula HOM05D006888 ORTHO05D008371 6.8e-33 146.4 186 43.0
FAN26G0552 Fragaria x ananassa HOM05D006888 ORTHO05D008371 2.6e-32 144.4 186 44.1
COL.COLO4_05553 Corchorus olitorius HOM05D004265 ORTHO05D005175 3.4e-32 144.1 186 40.3
FAN23G2816 Fragaria x ananassa HOM05D006888 ORTHO05D008371 4.4e-32 143.7 186 43.5
TWI56G0663 Tripterygium wilfordii HOM05D006888 ORTHO05D008371 5.7e-32 143.3 185 41.1
TPR.G21561 Trifolium pratense HOM05D006888 ORTHO05D008371 1.7e-31 141.7 186 41.9
Ciclev10003346m.g Citrus clementina HOM05D006888 ORTHO05D008371 4.9e-31 140.2 185 43.2
FAN19G0192 Fragaria x ananassa HOM05D006888 ORTHO05D008371 4.9e-31 140.2 186 43.0
FAN28G0085 Fragaria x ananassa HOM05D006888 ORTHO05D008371 4.9e-31 140.2 186 43.0
EL10Ac4g09447 Beta vulgaris HOM05D006888 ORTHO05D008371 6.4e-31 139.8 187 43.3
Psat5g190440 Pisum sativum HOM05D006888 ORTHO05D008371 1.1e-30 139.0 185 43.2
TAR362G0873 Trochodendron aralioides HOM05D006888 ORTHO05D008371 2.4e-30 137.9 192 42.7
Potri.005G014500 Populus trichocarpa HOM05D006888 ORTHO05D008371 5.4e-30 136.7 188 39.4
Sc16g0009020 Simmondsia chinensis HOM05D006888 ORTHO05D008371 5.4e-30 136.7 186 41.4
Hma1.2p1_0052F.1_g030800 Hydrangea macrophylla HOM05D006888 ORTHO05D008371 7.0e-30 136.3 135 51.9
Ca_03033_v3 Cicer arietinum L. HOM05D006888 ORTHO05D008371 1.2e-29 135.6 187 40.6
Manes.03G083400 Manihot esculenta HOM05D006888 ORTHO05D008371 1.2e-29 135.6 180 40.0
Nn1g08113 Nelumbo nucifera HOM05D006888 ORTHO05D008371 1.2e-29 135.6 236 37.3
MD02G1110600 Malus domestica HOM05D006888 ORTHO05D008371 1.6e-29 135.2 186 41.4
ATR0618G019 Amborella trichopoda HOM05D006888 ORTHO05D008371 2.7e-29 134.4 188 39.9
Lalb_Chr01g0001501 Lupinus albus HOM05D006888 ORTHO05D008371 7.8e-29 132.9 184 39.7
QL03p039859 Quercus lobata HOM05D006888 ORTHO05D008371 7.8e-29 132.9 185 40.0
QL03p013638 Quercus lobata HOM05D006888 ORTHO05D008371 1.3e-28 132.1 185 39.5
THA.LOC104820294 Tarenaya hassleriana HOM05D006888 ORTHO05D008371 1.3e-28 132.1 215 37.2
RcHm_v2.0_Chr3g0457031 Rosa chinensis HOM05D006888 ORTHO05D008371 2.3e-28 131.3 188 39.9
arahy.Tifrunner.gnm1.ann1.8QK61L Arachis hypogaea HOM05D006888 ORTHO05D008371 3.0e-28 131.0 185 41.1
AL1G20420 Arabidopsis lyrata HOM05D006888 ORTHO05D008371 1.1e-27 129.0 219 36.1
C05p07930 Brassica napus HOM05D006888 ORTHO05D008371 1.1e-27 129.0 186 38.2
AT1G09820 Arabidopsis thaliana HOM05D006888 ORTHO05D008371 1.5e-27 128.6 220 33.6
arahy.Tifrunner.gnm1.ann1.8HC1KC Arachis hypogaea HOM05D006888 ORTHO05D008371 1.9e-27 128.3 183 40.4
BolC5t29545H Brassica oleracea HOM05D006888 ORTHO05D008371 4.3e-27 127.1 186 38.2
Psat5g195760 Pisum sativum HOM05D006888 ORTHO05D008371 4.3e-27 127.1 186 40.9
Lj3g0005449 Lotus japonicus HOM05D006888 ORTHO05D008371 5.6e-27 126.7 177 40.7
CANSAT54G0476 Cannabis sativa HOM05D006888 ORTHO05D008371 9.5e-27 125.9 179 40.2
Carub.0001s0920 Capsella rubella HOM05D006888 ORTHO05D008371 9.5e-27 125.9 186 36.0
A06p06540 Brassica napus HOM05D006888 ORTHO05D008371 1.6e-26 125.2 187 35.8
CARHR009830 Cardamine hirsuta HOM05D006888 ORTHO05D008371 2.1e-26 124.8 219 36.1
Thhalv10009487m.g Eutrema salsugineum HOM05D006888 ORTHO05D008371 2.1e-26 124.8 186 35.5
BraA06t23865Z Brassica rapa HOM05D006888 ORTHO05D008371 2.8e-26 124.4 187 36.9
Aa31LG1G5110 Aethionema arabicum HOM05D006888 ORTHO05D008371 3.6e-26 124.0 186 37.1
CiPaw.08G155700 Carya illinoinensis HOM05D006888 ORTHO05D008371 4.7e-26 123.6 186 38.2
Actinidia35523 Actinidia chinensis HOM05D006888 ORTHO05D008371 1.4e-25 122.1 178 39.3
Aqoxy3G04232 Aquilegia oxysepala HOM05D006888 ORTHO05D008371 6.8e-25 119.8 185 38.4
Sp1g08450 Schrenkiella parvula HOM05D006888 ORTHO05D008371 6.8e-25 119.8 186 35.5
Psat5g177360 Pisum sativum HOM05D006888 ORTHO05D008371 2.6e-24 117.9 186 40.9
Psat5g190520 Pisum sativum HOM05D006888 ORTHO05D008371 2.6e-24 117.9 141 44.7
Atru.BG.136.p Acer truncatum HOM05D006888 ORTHO05D008371 9.8e-24 115.9 125 49.6
CDE05G0641 Ceratophyllum demersum HOM05D002225 ORTHO05D002271 2.2e-23 114.8 168 36.3
FvH4_6g07430 Fragaria vesca HOM05D006888 ORTHO05D008371 8.3e-23 112.8 188 35.6
EL10Ac4g09424 Beta vulgaris HOM05D006888 ORTHO05D008371 1.1e-22 112.5 165 40.6
FAN14G0975 Fragaria x ananassa HOM05D006888 ORTHO05D008371 1.1e-22 112.5 188 35.6
Lj5A334T57 Lonicera japonica HOM05D006888 ORTHO05D008371 1.3e-20 105.5 178 35.4
PGR083G0380 Punica granatum HOM05D006888 ORTHO05D008371 1.3e-20 105.5 133 42.9
AUR62000398 Chenopodium quinoa HOM05D006888 ORTHO05D008371 1.7e-20 105.1 132 47.0
BcaC05g24842 Brassica carinata HOM05D006888 ORTHO05D008371 3.0e-20 104.4 186 32.8
SHI18058 Sapria himalayana HOM05D006888 ORTHO05D008371 5.0e-20 103.6 127 44.9
ClCG00G002450 Citrullus lanatus HOM05D006888 ORTHO05D008371 5.6e-19 100.1 86 54.7
vmacro01561 Vaccinium macrocarpon HOM05D006888 ORTHO05D008371 1.2e-18 99.0 100 51.0
Ah.06g195940 Amaranthus hybridus HOM05D006888 ORTHO05D008371 2.8e-18 97.8 119 47.1
AUR62006754 Chenopodium quinoa HOM05D006888 ORTHO05D008371 2.8e-18 97.8 132 44.7
Thhalv10000737m.g Eutrema salsugineum HOM05D006888 ORTHO05D008371 3.4e-16 90.9 109 39.4
ECA236G2032 Erigeron canadensis HOM05D004601 ORTHO05D005806 8.3e-15 86.3 94 44.7
Hma1.2p1_0472F.1_g160010 Hydrangea macrophylla HOM05D006888 ORTHO05D008371 3.2e-14 84.3 68 57.4
Hma1.2p1_0472F.1_g160023 Hydrangea macrophylla HOM05D006888 ORTHO05D008371 3.2e-14 84.3 68 57.4
Thecc.05G322900 Theobroma cacao HOM05D006888 ORTHO05D008371 9.2e-14 82.8 70 54.3
Cc02_g35010 Coffea canephora HOM05D006888 ORTHO05D008371 1.7e-12 78.6 61 59.0
Nitab4.5_0004873g0030 Nicotiana tabacum HOM05D006888 ORTHO05D008371 6.6e-12 76.6 70 52.9
Sabra05G0011500 Salix brachista HOM05D006888 ORTHO05D008371 1.9e-11 75.1 62 56.5
Psat7g173680 Pisum sativum HOM05D006888 ORTHO05D008371 2.5e-11 74.7 143 35.7
DCAR_005421 Daucus carota HOM05D006888 ORTHO05D008371 2.8e-10 71.2 61 59.0
Eucgr.A00652 Eucalyptus grandis HOM05D006888 ORTHO05D008371 4.7e-10 70.5 61 50.8
SEGI_04891 Sequoiadendron giganteum HOM05D006888 ORTHO05D008371 1.4e-09 68.9 175 28.0
FAN09G2872 Fragaria x ananassa HOM05D006888 ORTHO05D008371 3.1e-09 67.8 77 44.2
FAN02G2736 Fragaria x ananassa HOM05D006888 ORTHO05D008371 2.6e-08 64.7 51 51.0
BolC9t57528H Brassica oleracea HOM05D007390 ORTHO05D009114 3.8e-07 60.8 206 25.2
A10p13050 Brassica napus HOM05D007390 ORTHO05D009114 8.4e-07 59.7 206 24.8
Thecc.01G192500 Theobroma cacao HOM05D006931 ORTHO05D008782 8.4e-07 59.7 147 29.9
Gohir.D04G161400 Gossypium hirsutum HOM05D006931 ORTHO05D008782 1.1e-06 59.3 194 25.8
Potri.014G040200 Populus trichocarpa HOM05D007639 ORTHO05D009509 1.1e-06 59.3 170 26.5
Gorai.012G149400 Gossypium raimondii HOM05D006931 ORTHO05D008782 1.4e-06 58.9 194 25.8
BraA10t43400Z Brassica rapa HOM05D007390 ORTHO05D009114 1.9e-06 58.5 206 24.3
CARHR269210 Cardamine hirsuta HOM05D007390 ORTHO05D009114 1.9e-06 58.5 154 29.9
Gohir.A04G119800 Gossypium hirsutum HOM05D006931 ORTHO05D008782 1.9e-06 58.5 147 27.9
Duzib213G0999 Durio zibethinus HOM05D007390 ORTHO05D009114 2.4e-06 58.2 191 26.7
BcaB08g35947 Brassica carinata HOM05D007390 ORTHO05D009114 3.2e-06 57.8 206 24.8
BcaC04g20197 Brassica carinata HOM05D007390 ORTHO05D009114 3.2e-06 57.8 206 24.8
C09p46770 Brassica napus HOM05D007390 ORTHO05D009114 3.2e-06 57.8 206 24.8
Nn5g29749 Nelumbo nucifera HOM05D007390 ORTHO05D009114 4.1e-06 57.4 68 45.6
Lsat_1_v5_gn_2_69440 Lactuca sativa HOM05D007291 ORTHO05D009038 5.4e-06 57.0 152 25.7
BcaB08g35944 Brassica carinata HOM05D007390 ORTHO05D009114 7.1e-06 56.6 194 25.3
Cfa009846 Carpinus fangiana HOM05D007455 ORTHO05D009431 7.1e-06 56.6 141 31.2
Sp6g17720 Schrenkiella parvula HOM05D007390 ORTHO05D009114 7.1e-06 56.6 194 24.7
Haze_23220 Corylus avellana HOM05D007455 ORTHO05D009431 9.2e-06 56.2 141 30.5


User provided reference genes

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