Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow3G0178 Salvia bowleyana HOM05D003845 ORTHO05D004161 0.0e+00 4526.5 2401 100.0
Migut.H00208 Erythranthe guttata HOM05D003845 ORTHO05D004161 0.0e+00 3070.8 2410 71.2
SGA_v2.0_scaffold33G13453 Striga asiatica HOM05D003845 ORTHO05D004161 0.0e+00 2845.8 2468 65.9
Oeu052985.1 Olea europaea HOM05D003845 ORTHO05D004161 0.0e+00 2514.2 2139 66.0
CSS0012709 Camellia sinensis var. sinensis HOM05D003845 ORTHO05D004161 0.0e+00 2508.4 2339 60.7
Cc07_g08900 Coffea canephora HOM05D003845 ORTHO05D004161 0.0e+00 2488.8 2378 59.5
Dinv33933 Davidia involucrata HOM05D003845 ORTHO05D004161 0.0e+00 2468.7 2069 64.8
Actinidia36313 Actinidia chinensis HOM05D003845 ORTHO05D004161 0.0e+00 2463.7 2410 58.6
GSVIVG01031064001 Vitis vinifera HOM05D003845 ORTHO05D004161 0.0e+00 2422.9 2362 58.1
Sopen02g030490 Solanum pennellii HOM05D003845 ORTHO05D004161 0.0e+00 2411.3 2427 56.6
TAR629G0674 Trochodendron aralioides HOM05D003845 ORTHO05D004161 0.0e+00 2400.2 2352 57.8
RcHm_v2.0_Chr2g0162941 Rosa chinensis HOM05D003845 ORTHO05D004161 0.0e+00 2367.4 2439 55.8
Duzib133G1200 Durio zibethinus HOM05D003845 ORTHO05D004161 0.0e+00 2367.0 2381 56.2
Atru.chr8.887 Acer truncatum HOM05D003845 ORTHO05D004161 0.0e+00 2356.3 2370 56.8
FvH4_6g45230 Fragaria vesca HOM05D003845 ORTHO05D004161 0.0e+00 2348.9 2426 55.9
Thecc.04G136100 Theobroma cacao HOM05D003845 ORTHO05D004161 0.0e+00 2347.0 2373 56.7
Lsat_1_v5_gn_4_153700 Lactuca sativa HOM05D003845 ORTHO05D004161 0.0e+00 2341.2 2221 58.9
ECA232G1957 Erigeron canadensis HOM05D003845 ORTHO05D004161 0.0e+00 2337.8 2249 58.6
HanXRQChr14g0438731 Helianthus annuus HOM05D003845 ORTHO05D004161 0.0e+00 2336.2 2212 58.5
Solyc02g085810.3 Solanum lycopersicum HOM05D003845 ORTHO05D004161 0.0e+00 2330.8 2423 55.3
Potri.004G101250 Populus trichocarpa HOM05D003845 ORTHO05D004161 0.0e+00 2328.5 2327 56.3
Nitab4.5_0001569g0050 Nicotiana tabacum HOM05D003845 ORTHO05D004161 0.0e+00 2320.0 2329 56.9
MD14G1001900 Malus domestica HOM05D003845 ORTHO05D004161 0.0e+00 2319.7 2323 56.8
Manes.02G067500 Manihot esculenta HOM05D003845 ORTHO05D004161 0.0e+00 2318.1 2357 57.0
TWI53G0876 Tripterygium wilfordii HOM05D003845 ORTHO05D004161 0.0e+00 2317.3 2320 56.5
Gorai.001G080300 Gossypium raimondii HOM05D003845 ORTHO05D004161 0.0e+00 2315.8 2402 55.2
Gohir.A07G071701 Gossypium hirsutum HOM05D003845 ORTHO05D004161 0.0e+00 2312.7 2396 55.1
CANSAT64G2814 Cannabis sativa HOM05D003845 ORTHO05D004161 0.0e+00 2307.3 2263 57.4
Gohir.D07G076100 Gossypium hirsutum HOM05D003845 ORTHO05D004161 0.0e+00 2301.9 2329 55.9
MD12G1002400 Malus domestica HOM05D003845 ORTHO05D004161 0.0e+00 2300.4 2448 54.9
Eucgr.F02484 Eucalyptus grandis HOM05D003845 ORTHO05D004161 0.0e+00 2294.2 2351 55.2
Nn4g23790 Nelumbo nucifera HOM05D003845 ORTHO05D004161 0.0e+00 2281.9 2294 56.1
Prupe.7G002300 Prunus persica HOM05D003845 ORTHO05D004161 0.0e+00 2281.5 2308 56.4
FAN02G2813 Fragaria x ananassa HOM05D003845 ORTHO05D004161 0.0e+00 2262.3 2484 54.0
CsaV3_5G039200 Cucumis sativus L. HOM05D003845 ORTHO05D004161 0.0e+00 2239.2 2405 53.6
vmacro05567 Vaccinium macrocarpon HOM05D003845 ORTHO05D004161 0.0e+00 2234.9 2732 50.8
Sc23g0006880 Simmondsia chinensis HOM05D003845 ORTHO05D004161 0.0e+00 2231.1 2338 54.8
MELO3C022095.2 Cucumis melo HOM05D003845 ORTHO05D004161 0.0e+00 2228.4 2365 54.0
Lalb_Chr21g0317871 Lupinus albus HOM05D003845 ORTHO05D004161 0.0e+00 2218.7 2374 54.3
Glyma.18G297900 Glycine max HOM05D003845 ORTHO05D004161 0.0e+00 2208.3 2322 54.0
Sed0012635 Sechium edule HOM05D003845 ORTHO05D004161 0.0e+00 2201.4 2387 53.7
Dinv34837 Davidia involucrata HOM05D003845 ORTHO05D004161 0.0e+00 2199.5 2333 55.6
Aqoxy3G03940 Aquilegia oxysepala HOM05D003845 ORTHO05D004161 0.0e+00 2194.5 2386 53.1
Hma1.2p1_0136F.1_g062180 Hydrangea macrophylla HOM05D003845 ORTHO05D004161 0.0e+00 2194.1 1801 66.0
CAN.G625.4 Capsicum annuum HOM05D003845 ORTHO05D004161 0.0e+00 2192.2 2128 57.9
Lj1g0009000 Lotus japonicus HOM05D003845 ORTHO05D004161 0.0e+00 2181.4 2337 53.4
VMungo1383G2489 Vigna mungo HOM05D003845 ORTHO05D004161 0.0e+00 2174.8 2334 53.6
Phvul.008G004700 Phaseolus vulgaris HOM05D003845 ORTHO05D004161 0.0e+00 2167.9 2350 53.5
PSO063G7466 Papaver somniferum HOM05D003845 ORTHO05D004161 0.0e+00 2166.7 2360 52.5
Medtr7g406950 Medicago truncatula HOM05D003845 ORTHO05D004161 0.0e+00 2156.3 2410 52.2
AUR62014525 Chenopodium quinoa HOM05D003845 ORTHO05D004161 0.0e+00 2152.5 2390 52.4
Aa31LG2G3530 Aethionema arabicum HOM05D003845 ORTHO05D004161 0.0e+00 2147.1 2368 53.6
Peaxi162Scf00814g00242 Petunia axillaris HOM05D003845 ORTHO05D004161 0.0e+00 2128.2 2423 52.5
FAN14G4373 Fragaria x ananassa HOM05D003845 ORTHO05D004161 0.0e+00 2126.3 2384 52.4
PGR004G1392 Punica granatum HOM05D003845 ORTHO05D004161 0.0e+00 2126.3 2341 52.7
AL2G25520 Arabidopsis lyrata HOM05D003845 ORTHO05D004161 0.0e+00 2115.5 2307 53.7
AT1G67140 Arabidopsis thaliana HOM05D003845 ORTHO05D004161 0.0e+00 2110.5 2252 54.5
C06p43130 Brassica napus HOM05D003845 ORTHO05D004161 0.0e+00 2106.6 2399 51.9
EL10Ac2g04592 Beta vulgaris HOM05D003845 ORTHO05D004161 0.0e+00 2106.3 2364 52.3
BolC6t39126H Brassica oleracea HOM05D003845 ORTHO05D004161 0.0e+00 2104.7 2398 51.8
A07p33800 Brassica napus HOM05D003845 ORTHO05D004161 0.0e+00 2100.1 2396 52.3
THA.LOC104805559 Tarenaya hassleriana HOM05D003845 ORTHO05D004161 0.0e+00 2098.6 2425 50.7
Carub.0002s1343 Capsella rubella HOM05D003845 ORTHO05D004161 0.0e+00 2097.8 2370 52.2
Nitab4.5_0002288g0020 Nicotiana tabacum HOM05D003845 ORTHO05D004161 0.0e+00 2095.1 2333 53.1
BraA07t31006Z Brassica rapa HOM05D003845 ORTHO05D004161 0.0e+00 2092.8 2394 52.1
Sp5g22090 Schrenkiella parvula HOM05D003845 ORTHO05D004161 0.0e+00 2092.4 2341 52.7
Thhalv10017993m.g Eutrema salsugineum HOM05D003845 ORTHO05D004161 0.0e+00 2085.5 2432 50.9
arahy.Tifrunner.gnm1.ann1.4V7WUF Arachis hypogaea HOM05D003845 ORTHO05D004161 0.0e+00 2080.4 2228 53.3
arahy.Tifrunner.gnm1.ann1.UJVA95 Arachis hypogaea HOM05D003845 ORTHO05D004161 0.0e+00 2080.4 2228 53.3
AUR62008978 Chenopodium quinoa HOM05D003845 ORTHO05D004161 0.0e+00 2042.3 2318 51.5
CiPaw.04G040900 Carya illinoinensis HOM05D003845 ORTHO05D004161 0.0e+00 1992.6 1623 65.6
Ah.10g037590 Amaranthus hybridus HOM05D003845 ORTHO05D004161 0.0e+00 1960.3 2407 48.9
Lj2C445G6 Lonicera japonica HOM05D003845 ORTHO05D004161 0.0e+00 1839.7 1746 58.8
QL02p051715 Quercus lobata HOM05D003845 ORTHO05D004161 0.0e+00 1763.4 3215 38.6
Zm00001eb382690 Zea mays HOM05D003845 ORTHO05D004161 0.0e+00 1734.9 2347 45.8
HPP92_003934 Vanilla planifolia HOM05D003845 ORTHO05D004161 0.0e+00 1722.2 2344 45.7
Hma1.2p1_0136F.1_g062170 Hydrangea macrophylla HOM05D003845 ORTHO05D004161 0.0e+00 1605.9 1296 67.2
ClCG11G005440 Citrullus lanatus HOM05D003845 ORTHO05D004161 0.0e+00 1577.4 1721 53.6
ATR0564G046 Amborella trichopoda HOM05D003845 ORTHO05D004161 0.0e+00 1567.4 1775 50.5
SHI17842 Sapria himalayana HOM05D003845 ORTHO05D004161 0.0e+00 1535.4 2220 43.2
Psat3g206280 Pisum sativum HOM05D003845 ORTHO05D004161 0.0e+00 1511.1 1638 52.9
Mapoly0101s0033 Marchantia polymorpha HOM05D003845 ORTHO05D004161 0.0e+00 1404.0 2428 38.1
Pp3c15_3000 Physcomitrium patens HOM05D003845 ORTHO05D004161 0.0e+00 1395.6 2346 39.5
CDE02G0049 Ceratophyllum demersum HOM05D003845 ORTHO05D004161 0.0e+00 1277.3 1401 51.5
AagrBONN_evm.TU.Sc2ySwM_368.2329__2330 Anthoceros agrestis HOM05D003845 ORTHO05D004161 0.0e+00 1263.4 2235 37.9
SEGI_31548 Sequoiadendron giganteum HOM05D003845 ORTHO05D004161 0.0e+00 1168.7 1582 44.9
SMO239G0031 Selaginella moellendorffii HOM05D003845 ORTHO05D004161 0.0e+00 1157.9 2214 36.3
CBR_g31193 Chara braunii HOM05D003845 ORTHO05D004161 0.0e+00 1118.2 2263 34.3
Hund16134 Selenicereus undatus HOM05D003845 ORTHO05D004161 0.0e+00 1116.3 1084 56.9
PSO782G1231 Papaver somniferum HOM05D003845 ORTHO05D004161 3.0e-303 1046.6 1005 57.1
Os06g0505302 Oryza sativa ssp. japonica HOM05D003845 ORTHO05D004161 1.1e-300 1038.1 1203 50.0
unitig_899.g14511 Utricularia gibba HOM05D003845 ORTHO05D004161 1.8e-300 1037.3 1399 47.7
CARHR059600 Cardamine hirsuta HOM05D003845 ORTHO05D004161 1.1e-297 1028.1 847 64.9
Ca_04077_v3 Cicer arietinum L. HOM05D003845 ORTHO05D004161 4.4e-291 1006.1 1422 44.9
HPP92_003935 Vanilla planifolia HOM05D003845 ORTHO05D004161 2.7e-264 917.1 1001 51.6
Ciclev10010942m.g Citrus clementina HOM05D003845 ORTHO05D004161 3.6e-232 810.4 1024 47.4
unitig_899.g14510 Utricularia gibba HOM05D003845 ORTHO05D004161 7.0e-220 769.6 895 51.5
DCAR_017205 Daucus carota HOM05D003845 ORTHO05D004161 8.3e-205 719.5 776 54.0
Lj1g0022983 Lotus japonicus HOM05D003845 ORTHO05D004161 3.1e-199 701.0 1029 42.5
Hund16135 Selenicereus undatus HOM05D003845 ORTHO05D004161 5.8e-198 696.8 1039 44.0
BcaB03g15908 Brassica carinata HOM05D003845 ORTHO05D004161 4.4e-182 644.0 790 47.7
CSS0018407 Camellia sinensis var. sinensis HOM05D003845 ORTHO05D004161 1.4e-167 595.9 612 57.4
EL10Ac2g04610 Beta vulgaris HOM05D003845 ORTHO05D004161 2.0e-166 592.0 600 55.5
Cpa.g.sc179.5 Carica papaya HOM05D003845 ORTHO05D004161 3.2e-164 584.7 948 41.6
Ca_03194_v3 Cicer arietinum L. HOM05D003845 ORTHO05D003700 2.1e-152 545.4 674 49.6
Ciclev10011943m.g Citrus clementina HOM05D003845 ORTHO05D004161 1.6e-139 502.7 509 55.8
Lj2C445T15 Lonicera japonica HOM05D003845 ORTHO05D004161 1.0e-138 500.0 600 51.3
ClCG11G005430 Citrullus lanatus HOM05D003845 ORTHO05D004161 1.4e-130 473.0 486 54.3
SEGI_40473 Sequoiadendron giganteum HOM05D003845 ORTHO05D004161 2.7e-123 448.7 523 49.1
FAN09G0938 Fragaria x ananassa HOM05D003845 ORTHO05D004161 2.9e-109 402.1 264 76.1
ATR0564G289 Amborella trichopoda HOM05D003845 ORTHO05D004161 1.4e-95 356.7 410 52.0
Cpa.g.sc179.9 Carica papaya HOM05D003845 ORTHO05D004161 1.0e-90 340.5 300 58.0
Rhsim09G0080700 Rhododendron simsii HOM05D003845 ORTHO05D004161 8.9e-90 337.4 338 59.2
SEGI_32880 Sequoiadendron giganteum HOM05D003845 ORTHO05D004161 2.0e-86 326.2 797 31.4
CDE02G4394 Ceratophyllum demersum HOM05D003845 ORTHO05D004161 2.9e-80 305.8 415 44.3
RcHm_v2.0_Chr2g0163391 Rosa chinensis HOM05D003845 ORTHO05D004161 5.2e-74 285.0 334 53.0
Glyma.08G364200 Glycine max HOM05D003845 ORTHO05D004161 1.2e-73 283.9 469 36.7
PRCOL_00002157 Prasinoderma coloniale HOM05D003845 ORTHO05D004161 3.4e-73 282.3 1426 25.5
Lsat_1_v5_gn_4_153641 Lactuca sativa HOM05D003845 ORTHO05D004161 6.2e-67 261.5 361 46.3
Cre16.g684100 Chlamydomonas reinhardtii HOM05D003845 ORTHO05D004161 1.9e-63 250.0 1925 23.0
Haze_14141 Corylus avellana HOM05D003845 ORTHO05D004161 2.3e-61 243.0 470 38.3
COL.COLO4_05467 Corchorus olitorius HOM05D003845 ORTHO05D004161 1.6e-59 236.9 316 48.7
CSS0008855 Camellia sinensis var. sinensis HOM05D003845 ORTHO05D004161 2.8e-59 236.1 151 78.1
CAN.G625.3 Capsicum annuum HOM05D003845 ORTHO05D004161 6.2e-59 235.0 177 71.2
CSS0040864 Camellia sinensis var. sinensis HOM05D003845 ORTHO05D004161 1.6e-54 220.3 148 76.4
Lsat_1_v5_gn_5_95120 Lactuca sativa HOM05D000020 ORTHO05D000543 1.9e-52 213.4 187 66.3
Lsat_1_v5_gn_3_65920 Lactuca sativa HOM05D003845 ORTHO05D004161 2.5e-52 213.0 180 68.9
Lsat_1_v5_gn_4_179241 Lactuca sativa HOM05D003845 ORTHO05D004161 2.5e-52 213.0 180 68.9
Lsat_1_v5_gn_8_43240 Lactuca sativa HOM05D003845 ORTHO05D004161 2.5e-52 213.0 180 68.9
QL02p051676 Quercus lobata HOM05D003845 ORTHO05D004161 1.1e-50 207.6 128 82.8
Ca_04078_v3 Cicer arietinum L. HOM05D003845 ORTHO05D004161 3.2e-47 196.1 157 63.7
Actinidia15875 Actinidia chinensis HOM05D003845 ORTHO05D004161 2.7e-46 193.0 120 81.7
CiPaw.04G041000 Carya illinoinensis HOM05D003845 ORTHO05D004161 3.0e-45 189.5 324 39.8
Lsat_1_v5_gn_5_70501 Lactuca sativa HOM05D003845 ORTHO05D004161 5.8e-41 175.3 129 75.2
Cpa.g.sc179.6 Carica papaya HOM05D003845 ORTHO05D004161 1.7e-32 147.1 148 58.8
Actinidia15877 Actinidia chinensis HOM05D003845 ORTHO05D004161 8.4e-32 144.8 196 41.8
CDE02G2490 Ceratophyllum demersum HOM05D003845 ORTHO05D004161 8.4e-32 144.8 338 34.3
Cfa024622 Carpinus fangiana HOM05D003845 ORTHO05D004161 2.7e-30 139.8 567 24.3
Lj6g0007936 Lotus japonicus HOM05D003845 ORTHO05D004161 3.9e-29 136.0 263 38.4
Lsat_1_v5_gn_8_163720 Lactuca sativa HOM05D003845 ORTHO05D004161 1.3e-27 131.0 116 65.5
Dinv33934 Davidia involucrata HOM05D003845 ORTHO05D004161 8.5e-24 118.2 238 45.8
CSS0031203 Camellia sinensis var. sinensis HOM05D003845 ORTHO05D004161 4.2e-23 115.9 69 87.0
Gorai.001G080600 Gossypium raimondii HOM05D003845 ORTHO05D004161 1.1e-20 107.8 169 44.4
Manes.07G074028 Manihot esculenta HOM05D003845 ORTHO05D004161 3.7e-19 102.8 89 59.6
Lsat_1_v5_gn_8_150280 Lactuca sativa HOM05D001675 ORTHO05D004161 9.1e-18 98.2 61 75.4
MCO14G535 Micromonas commoda HOM05D003845 ORTHO05D004161 1.2e-17 97.8 484 24.4
Actinidia17348 Actinidia chinensis HOM05D003226 ORTHO05D015784 6.5e-16 92.0 56 78.6
Actinidia17345 Actinidia chinensis HOM05D003845 ORTHO05D004161 8.5e-16 91.7 54 81.5
Cpa.g.sc3785.2 Carica papaya HOM05D003845 ORTHO05D004161 8.5e-16 91.7 75 61.3
CAN.G178.11 Capsicum annuum HOM05D007284 ORTHO05D009303 1.9e-15 90.5 77 58.4
CSS0027472 Camellia sinensis var. sinensis HOM05D003845 ORTHO05D004161 3.2e-15 89.7 54 77.8
COL.COLO4_16180 Corchorus olitorius HOM05D003845 ORTHO05D004161 4.2e-15 89.4 53 83.0
Actinidia20850 Actinidia chinensis HOM05D003845 ORTHO05D004161 9.4e-15 88.2 101 53.5
Actinidia13420 Actinidia chinensis HOM05D003845 ORTHO05D004161 2.7e-14 86.7 62 69.4
Lsat_1_v5_gn_5_158740 Lactuca sativa HOM05D000727 ORTHO05D000541 7.9e-14 85.1 54 66.7
Actinidia20836 Actinidia chinensis HOM05D004442 ORTHO05D002066 2.3e-13 83.6 70 65.7
arahy.Tifrunner.gnm1.ann1.395ZIT Arachis hypogaea HOM05D003845 ORTHO05D004161 3.0e-13 83.2 61 70.5
arahy.Tifrunner.gnm1.ann1.57NG5G Arachis hypogaea HOM05D003845 ORTHO05D004161 6.7e-13 82.0 53 73.6
RcHm_v2.0_Chr2g0123031 Rosa chinensis HOM05D003845 ORTHO05D004161 2.0e-12 80.5 70 62.9
EL10Ac8g19727 Beta vulgaris HOM05D003845 ORTHO05D004161 2.6e-12 80.1 53 79.2
Cpa.g.sc179.7 Carica papaya HOM05D003845 ORTHO05D004161 3.3e-12 79.7 56 76.8
Hund04285 Selenicereus undatus HOM05D003845 ORTHO05D004161 5.7e-12 79.0 58 67.2
Cpa.g.c36099 Carica papaya HOM05D003845 ORTHO05D004161 9.7e-12 78.2 123 42.3
Os06g0505100 Oryza sativa ssp. japonica HOM05D003845 ORTHO05D004161 2.2e-11 77.0 264 30.3
Lsat_1_v5_gn_1_87981 Lactuca sativa HOM05D003845 ORTHO05D004161 4.1e-10 72.8 46 71.7
CSS0006962 Camellia sinensis var. sinensis HOM05D003845 ORTHO05D004161 3.5e-09 69.7 44 81.8
EL10Ac9g21747 Beta vulgaris HOM05D000802 ORTHO05D001074 3.8e-08 66.2 44 79.5
ClCG11G005420 Citrullus lanatus HOM05D003845 ORTHO05D004161 1.1e-07 64.7 50 68.0
MBI02_g02968_MAGBIO Magnolia biondii HOM05D003845 ORTHO05D004161 2.1e-06 60.5 39 74.4
RcHm_v2.0_Chr2g0166401 Rosa chinensis HOM05D003845 ORTHO05D004161 2.7e-06 60.1 141 32.6
arahy.Tifrunner.gnm1.ann1.MNN8Y6 Arachis hypogaea HOM05D003845 ORTHO05D004161 6.1e-06 58.9 63 54.0


User provided reference genes

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