Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow3G0055 Salvia bowleyana HOM05D004062 ORTHO05D004417 2.5e-50 201.8 104 100.0
SGA_v2.0_scaffold202G41473 Striga asiatica HOM05D004062 ORTHO05D004417 1.3e-33 146.4 104 71.2
Migut.H00242 Erythranthe guttata HOM05D004062 ORTHO05D004417 2.8e-33 145.2 104 68.3
MSTRG.23597 Avicennia marina HOM05D004062 ORTHO05D004417 9.0e-32 140.2 103 69.9
SalBow5G1592 Salvia bowleyana HOM05D004062 ORTHO05D004417 8.7e-27 123.6 104 62.5
Migut.L00492 Erythranthe guttata HOM05D004062 ORTHO05D004417 2.5e-26 122.1 96 63.5
Oeu030797.1 Olea europaea HOM05D004062 ORTHO05D004417 1.6e-25 119.4 98 61.2
Oeu030798.1 Olea europaea HOM05D004062 ORTHO05D004417 1.6e-25 119.4 98 61.2
Oeu012583.1 Olea europaea HOM05D004062 ORTHO05D004417 2.8e-25 118.6 104 58.7
Cc07_g08490 Coffea canephora HOM05D004062 ORTHO05D004417 9.0e-24 113.6 100 56.0
Oeu047438.1 Olea europaea HOM05D004062 ORTHO05D004417 1.5e-23 112.8 103 62.1
Dinv34790 Davidia involucrata HOM05D002710 ORTHO05D002905 2.0e-23 112.5 99 54.5
Oeu041981.1 Olea europaea HOM05D004062 ORTHO05D004417 3.4e-23 111.7 98 58.2
Thecc.04G128000 Theobroma cacao HOM05D004062 ORTHO05D004417 1.7e-22 109.4 99 54.5
Dinv33967 Davidia involucrata HOM05D004062 ORTHO05D004417 5.0e-22 107.8 101 56.4
DCAR_010711 Daucus carota HOM05D004062 ORTHO05D004417 8.4e-22 107.1 104 55.8
DCAR_010707 Daucus carota HOM05D004062 ORTHO05D004417 3.2e-21 105.1 99 55.6
CiPaw.04G044300 Carya illinoinensis HOM05D004062 ORTHO05D004417 7.2e-21 104.0 100 55.0
COL.COLO4_09380 Corchorus olitorius HOM05D004062 ORTHO05D004417 7.2e-21 104.0 99 52.5
DCAR_010710 Daucus carota HOM05D004062 ORTHO05D004417 9.3e-21 103.6 104 53.8
DCAR_010708 Daucus carota HOM05D004062 ORTHO05D004417 1.2e-20 103.2 96 56.2
TAR629G2241 Trochodendron aralioides HOM05D004062 ORTHO05D004417 2.7e-20 102.1 100 54.0
Haze_14190 Corylus avellana HOM05D004062 ORTHO05D004417 3.5e-20 101.7 95 54.7
CiPaw.03G065300 Carya illinoinensis HOM05D004062 ORTHO05D004417 4.6e-20 101.3 102 53.9
Duzib138G0221 Durio zibethinus HOM05D004062 ORTHO05D004417 1.0e-19 100.1 99 47.5
DCAR_010713 Daucus carota HOM05D004062 ORTHO05D004417 2.3e-19 99.0 100 52.0
Manes.01G113100 Manihot esculenta HOM05D004062 ORTHO05D004417 3.9e-19 98.2 100 56.0
PGR004G1762 Punica granatum HOM05D004062 ORTHO05D004417 3.9e-19 98.2 100 52.0
QL02p050215 Quercus lobata HOM05D004062 ORTHO05D004417 3.9e-19 98.2 101 52.5
PGSC0003DMG400016976 Solanum tuberosum HOM05D004062 ORTHO05D004417 6.7e-19 97.4 102 51.0
PGSC0003DMG400030667 Solanum tuberosum HOM05D004062 ORTHO05D004417 6.7e-19 97.4 102 51.0
Sabra17G0098800 Salix brachista HOM05D004062 ORTHO05D004417 8.7e-19 97.1 99 51.5
Nn4g23971 Nelumbo nucifera HOM05D004062 ORTHO05D004417 3.3e-18 95.1 99 49.5
Sabra04G0064400 Salix brachista HOM05D004062 ORTHO05D004417 3.3e-18 95.1 98 49.0
Glyma.02G089400 Glycine max HOM05D004062 ORTHO05D004417 4.3e-18 94.7 99 52.5
DCAR_010706 Daucus carota HOM05D004062 ORTHO05D004417 5.7e-18 94.4 100 51.0
Nn3g17968 Nelumbo nucifera HOM05D004062 ORTHO05D004417 1.3e-17 93.2 99 47.5
Aqoxy3G03995 Aquilegia oxysepala HOM05D004062 ORTHO05D004417 2.2e-17 92.4 100 47.0
Hma1.2p1_0500F.1_g167200 Hydrangea macrophylla HOM05D004062 ORTHO05D004417 2.8e-17 92.0 101 48.5
Glyma.18G293600 Glycine max HOM05D004062 ORTHO05D004417 4.8e-17 91.3 99 50.5
Potri.017G119800 Populus trichocarpa HOM05D004062 ORTHO05D004417 4.8e-17 91.3 101 46.5
Potri.004G095150 Populus trichocarpa HOM05D004062 ORTHO05D004417 6.3e-17 90.9 98 45.9
Potri.004G095200 Populus trichocarpa HOM05D004062 ORTHO05D004417 6.3e-17 90.9 98 45.9
CANSAT78G1768 Cannabis sativa HOM05D004062 ORTHO05D004417 2.4e-16 89.0 98 50.0
Ciclev10013071m.g Citrus clementina HOM05D004062 ORTHO05D004417 3.1e-16 88.6 98 49.0
Aqoxy3G03996 Aquilegia oxysepala HOM05D004062 ORTHO05D004417 4.1e-16 88.2 102 48.0
CiPaw.05G243300 Carya illinoinensis HOM05D004062 ORTHO05D004417 5.3e-16 87.8 101 43.6
TAR622G0216 Trochodendron aralioides HOM05D004062 ORTHO05D004417 5.3e-16 87.8 99 45.5
Medtr7g082730 Medicago truncatula HOM05D004062 ORTHO05D004417 9.0e-16 87.0 101 52.5
Ciclev10013069m.g Citrus clementina HOM05D004062 ORTHO05D004417 1.5e-15 86.3 100 51.0
Manes.02G072000 Manihot esculenta HOM05D004062 ORTHO05D004417 2.6e-15 85.5 96 51.0
Gohir.A11G166400 Gossypium hirsutum HOM05D004062 ORTHO05D004417 4.5e-15 84.7 99 42.4
Eucgr.F02795 Eucalyptus grandis HOM05D004062 ORTHO05D004417 5.9e-15 84.3 103 44.7
Aqoxy3G03994 Aquilegia oxysepala HOM05D004062 ORTHO05D004417 1.3e-14 83.2 102 45.1
Gohir.D11G172800 Gossypium hirsutum HOM05D004062 ORTHO05D004417 1.7e-14 82.8 99 43.4
Medtr7g082700 Medicago truncatula HOM05D004062 ORTHO05D004417 2.2e-14 82.4 103 50.5
Medtr7g082740 Medicago truncatula HOM05D004062 ORTHO05D004417 2.2e-14 82.4 103 50.5
TAR622G1405 Trochodendron aralioides HOM05D004062 ORTHO05D004417 2.2e-14 82.4 96 42.7
CSS0038275 Camellia sinensis var. sinensis HOM05D004062 ORTHO05D004417 2.9e-14 82.0 102 46.1
DCAR_010709 Daucus carota HOM05D004062 ORTHO05D004417 2.9e-14 82.0 104 44.2
arahy.Tifrunner.gnm1.ann1.56V7KA Arachis hypogaea HOM05D004062 ORTHO05D004417 3.8e-14 81.6 92 51.1
arahy.Tifrunner.gnm1.ann1.RE711V Arachis hypogaea HOM05D004062 ORTHO05D004417 3.8e-14 81.6 92 51.1
Gohir.D11G172400 Gossypium hirsutum HOM05D004062 ORTHO05D004417 5.0e-14 81.3 99 43.4
Gorai.007G185100 Gossypium raimondii HOM05D004062 ORTHO05D004417 5.0e-14 81.3 99 43.4
arahy.Tifrunner.gnm1.ann1.95RUG0 Arachis hypogaea HOM05D004062 ORTHO05D004417 6.5e-14 80.9 94 47.9
arahy.Tifrunner.gnm1.ann1.EB5M6E Arachis hypogaea HOM05D004062 ORTHO05D004417 6.5e-14 80.9 94 47.9
CSS0019285 Camellia sinensis var. sinensis HOM05D004062 ORTHO05D004417 8.5e-14 80.5 102 45.1
Rhsim08G0083900 Rhododendron simsii HOM05D004062 ORTHO05D004417 8.5e-14 80.5 101 42.6
Lj1g0013725 Lotus japonicus HOM05D004062 ORTHO05D004417 1.1e-13 80.1 99 43.4
Lsat_1_v5_gn_3_82781 Lactuca sativa HOM05D004062 ORTHO05D004417 1.4e-13 79.7 93 49.5
Psat3g097360 Pisum sativum HOM05D004062 ORTHO05D004417 3.2e-13 78.6 102 51.0
Lj1g0027246 Lotus japonicus HOM05D004062 ORTHO05D004417 4.2e-13 78.2 100 47.0
Actinidia15903 Actinidia chinensis HOM05D002710 ORTHO05D002905 5.5e-13 77.8 105 40.0
MBI16_g14296_MAGBIO Magnolia biondii HOM05D004062 ORTHO05D004417 7.2e-13 77.4 99 45.5
MBI16_g14297_MAGBIO Magnolia biondii HOM05D004062 ORTHO05D004417 1.2e-12 76.6 99 45.5
Rhsim10G0073300 Rhododendron simsii HOM05D004062 ORTHO05D004417 1.6e-12 76.3 98 40.8
VMungo1383G0607 Vigna mungo HOM05D004062 ORTHO05D004417 2.1e-12 75.9 99 41.4
MBI16_g14298_MAGBIO Magnolia biondii HOM05D004062 ORTHO05D004417 4.6e-12 74.7 99 43.4
Phvul.008G008800 Phaseolus vulgaris HOM05D004062 ORTHO05D004417 1.0e-11 73.6 99 45.5
Ciclev10013668m.g Citrus clementina HOM05D004062 ORTHO05D004417 1.4e-11 73.2 86 48.8
MBI10_g08537_MAGBIO Magnolia biondii HOM05D004062 ORTHO05D004417 1.4e-11 73.2 103 42.7
Aqoxy3G03997 Aquilegia oxysepala HOM05D004062 ORTHO05D004417 1.8e-11 72.8 102 40.2
Ca_08095_v3 Cicer arietinum L. HOM05D004062 ORTHO05D004417 1.8e-11 72.8 102 44.1
RcHm_v2.0_Chr4g0434311 Rosa chinensis HOM05D004062 ORTHO05D004417 1.8e-11 72.8 107 42.1
Cpa.g.sc314.3 Carica papaya HOM05D004062 ORTHO05D004417 2.3e-11 72.4 101 37.6
Lalb_Chr17g0335981 Lupinus albus HOM05D004062 ORTHO05D004417 2.3e-11 72.4 99 42.4
Ca_08096_v3 Cicer arietinum L. HOM05D004062 ORTHO05D004417 3.9e-11 71.6 102 45.1
Lj1g0017758 Lotus japonicus HOM05D004062 ORTHO05D004417 3.9e-11 71.6 94 45.7
Psat3g097320 Pisum sativum HOM05D004062 ORTHO05D004417 3.9e-11 71.6 99 50.5
TPR.G16550 Trifolium pratense HOM05D004062 ORTHO05D004417 3.9e-11 71.6 101 44.6
Phvul.008G008700 Phaseolus vulgaris HOM05D004062 ORTHO05D004417 5.1e-11 71.2 89 43.8
TPR.G16561 Trifolium pratense HOM05D004062 ORTHO05D004417 6.7e-11 70.9 101 44.6
EL10Ac2g04523 Beta vulgaris HOM05D004062 ORTHO05D004417 1.1e-10 70.1 90 42.2
MBI18_g04358_MAGBIO Magnolia biondii HOM05D004062 ORTHO05D004417 1.1e-10 70.1 93 45.2
DCAR_010712 Daucus carota HOM05D004062 ORTHO05D004417 1.5e-10 69.7 100 42.0
Glyma.02G089500 Glycine max HOM05D004062 ORTHO05D004417 1.5e-10 69.7 91 46.2
CiPaw.05G243400 Carya illinoinensis HOM05D004062 ORTHO05D004417 2.0e-10 69.3 110 36.4
FAN17G2092 Fragaria x ananassa HOM05D004062 ORTHO05D004417 2.0e-10 69.3 108 40.7
Lalb_Chr04g0257671 Lupinus albus HOM05D004062 ORTHO05D004417 2.0e-10 69.3 99 43.4
VMungo1383G2158 Vigna mungo HOM05D004062 ORTHO05D004417 2.0e-10 69.3 99 43.4
FAN07G0543 Fragaria x ananassa HOM05D004062 ORTHO05D004417 2.5e-10 68.9 108 40.7
Potri.010G119200 Populus trichocarpa HOM05D004062 ORTHO05D004417 2.5e-10 68.9 99 38.4
FvH4_4g26630 Fragaria vesca HOM05D004062 ORTHO05D004417 4.3e-10 68.2 108 40.7
FAN12G0456 Fragaria x ananassa HOM05D004062 ORTHO05D004417 4.3e-10 68.2 108 40.7
FAN12G4350 Fragaria x ananassa HOM05D004062 ORTHO05D004417 4.3e-10 68.2 108 40.7
Glyma.18G293500 Glycine max HOM05D004062 ORTHO05D004417 4.3e-10 68.2 89 47.2
FAN22G1760 Fragaria x ananassa HOM05D004062 ORTHO05D004417 7.4e-10 67.4 108 39.8
Rhsim09G0103200 Rhododendron simsii HOM05D004062 ORTHO05D004417 7.4e-10 67.4 98 40.8
Sabra10G0089600 Salix brachista HOM05D004062 ORTHO05D004417 2.2e-09 65.9 99 36.4
Prupe.1G317600 Prunus persica HOM05D004062 ORTHO05D004417 2.8e-09 65.5 103 42.7
Prupe.1G317700 Prunus persica HOM05D004062 ORTHO05D004417 6.3e-09 64.3 106 40.6
Thecc.02G220400 Theobroma cacao HOM05D004062 ORTHO05D004417 6.3e-09 64.3 100 34.0
Psat3g097280 Pisum sativum HOM05D004062 ORTHO05D004417 1.1e-08 63.5 99 35.4
Atru.chr1.1607 Acer truncatum HOM05D004062 ORTHO05D004417 1.4e-08 63.2 97 36.1
Rhsim09G0103100 Rhododendron simsii HOM05D004062 ORTHO05D004417 1.4e-08 63.2 99 38.4
AUR62023219 Chenopodium quinoa HOM05D004062 ORTHO05D004417 1.8e-08 62.8 90 38.9
AUR62044612 Chenopodium quinoa HOM05D004062 ORTHO05D004417 1.8e-08 62.8 90 38.9
Ah.16g101490 Amaranthus hybridus HOM05D004062 ORTHO05D004417 2.4e-08 62.4 96 41.7
Psat3g097240 Pisum sativum HOM05D004062 ORTHO05D004417 3.1e-08 62.0 89 43.8
TPR.G16541 Trifolium pratense HOM05D004062 ORTHO05D004417 4.1e-08 61.6 89 41.6
Ca_08097_v3 Cicer arietinum L. HOM05D004062 ORTHO05D004417 5.3e-08 61.2 89 40.4
Ciclev10017934m.g Citrus clementina HOM05D004062 ORTHO05D004417 1.2e-07 60.1 100 36.0
Dinv16146 Davidia involucrata HOM05D004062 ORTHO05D004417 1.2e-07 60.1 94 34.0
HPP92_006902 Vanilla planifolia HOM05D003529 ORTHO05D004106 3.4e-07 58.5 95 35.8
A09p54520 Brassica napus HOM05D003529 ORTHO05D004106 4.5e-07 58.2 87 37.9
BraA09t40864Z Brassica rapa HOM05D003529 ORTHO05D004106 4.5e-07 58.2 87 37.9
Medtr7g082760 Medicago truncatula HOM05D004062 ORTHO05D004417 4.5e-07 58.2 89 39.3
Sp4g29420 Schrenkiella parvula HOM05D003529 ORTHO05D004106 4.5e-07 58.2 84 36.9
Actinidia14929 Actinidia chinensis HOM05D004062 ORTHO05D004417 5.9e-07 57.8 104 36.5
CARHR142880 Cardamine hirsuta HOM05D003529 ORTHO05D004106 7.7e-07 57.4 84 36.9
CiPaw.07G113900 Carya illinoinensis HOM05D003529 ORTHO05D004106 7.7e-07 57.4 92 39.1
CDE10G0393 Ceratophyllum demersum HOM05D004062 ORTHO05D004417 7.7e-07 57.4 96 32.3
Haze_04995 Corylus avellana HOM05D003529 ORTHO05D004106 7.7e-07 57.4 85 43.5
AT2G47485 Arabidopsis thaliana HOM05D003529 ORTHO05D004106 1.0e-06 57.0 84 36.9
BcaC07g40776 Brassica carinata HOM05D003529 ORTHO05D004106 1.0e-06 57.0 87 36.8
C08p37400 Brassica napus HOM05D003529 ORTHO05D004106 1.0e-06 57.0 87 36.8
Medtr7g082750 Medicago truncatula HOM05D004062 ORTHO05D004417 1.0e-06 57.0 99 33.3
BcaC07g40741 Brassica carinata HOM05D003529 ORTHO05D004106 1.3e-06 56.6 87 36.8
BolC8t51321H Brassica oleracea HOM05D003529 ORTHO05D004106 1.3e-06 56.6 87 36.8
C06p28320 Brassica napus HOM05D003529 ORTHO05D004106 1.7e-06 56.2 87 35.6
Haze_04994 Corylus avellana HOM05D003529 ORTHO05D004106 2.2e-06 55.8 84 40.5
BcaB02g07332 Brassica carinata HOM05D003529 ORTHO05D004106 2.9e-06 55.5 87 36.8
THA.LOC104817473 Tarenaya hassleriana HOM05D003529 ORTHO05D004106 2.9e-06 55.5 87 36.8
Zm00001eb285880 Zea mays HOM05D003529 ORTHO05D004106 2.9e-06 55.5 99 37.4
A07p26020 Brassica napus HOM05D003529 ORTHO05D004106 3.8e-06 55.1 88 37.5
BolC6t38003H Brassica oleracea HOM05D003529 ORTHO05D004106 3.8e-06 55.1 88 37.5
BraA07t30250Z Brassica rapa HOM05D003529 ORTHO05D004106 3.8e-06 55.1 88 37.5
Haze_00662 Corylus avellana HOM05D004062 ORTHO05D004417 5.0e-06 54.7 100 37.0
Sp5g00860 Schrenkiella parvula HOM05D003529 ORTHO05D004106 5.0e-06 54.7 87 35.6
ClCG01G005940 Citrullus lanatus HOM05D004062 ORTHO05D004417 6.5e-06 54.3 90 37.8
Ciclev10018020m.g Citrus clementina HOM05D004062 ORTHO05D004417 6.5e-06 54.3 102 36.3
THA.LOC104802191 Tarenaya hassleriana HOM05D003529 ORTHO05D004106 6.5e-06 54.3 85 36.5
BcaC08g45209 Brassica carinata HOM05D003529 ORTHO05D004106 8.5e-06 53.9 86 38.4
A05p00440 Brassica napus HOM05D003529 ORTHO05D004106 8.5e-06 53.9 84 38.1
BolC4t21684H Brassica oleracea HOM05D003529 ORTHO05D004106 8.5e-06 53.9 84 38.1
BraA05t19042Z Brassica rapa HOM05D003529 ORTHO05D004106 8.5e-06 53.9 84 38.1


User provided reference genes

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